Wall clock time and date at job start Mon Mar 30 2020 07:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47433 * 2 1 4 4 C 1.38249 * 119.95759 * 99.99808 * 3 2 1 5 5 C 1.38132 * 120.07918 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.00416 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47551 * 219.99960 * 6 5 4 8 8 N 1.46900 * 109.47395 * 340.00422 * 6 5 4 9 9 C 1.50702 * 109.46869 * 100.00014 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 6 5 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 6 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 6 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.38774 * 119.99700 * 0.25183 * 5 4 3 18 18 O 1.35889 * 120.04575 * 179.70445 * 17 5 4 19 19 C 1.42897 * 117.00354 * 180.02562 * 18 17 5 20 20 C 1.38671 * 119.91141 * 359.44904 * 17 5 4 21 21 C 1.38396 * 119.91825 * 0.57403 * 20 17 5 22 22 F 1.35094 * 119.99483 * 179.67864 * 21 20 17 23 23 H 1.08994 * 109.47458 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47351 * 300.00593 * 1 2 3 25 25 H 1.09004 * 109.46128 * 60.00132 * 1 2 3 26 26 H 1.08999 * 109.47351 * 239.99407 * 2 1 3 27 27 H 1.09008 * 109.46829 * 120.00051 * 2 1 3 28 28 H 1.08003 * 119.96424 * 0.02562 * 4 3 2 29 29 H 1.00903 * 111.00086 * 59.99217 * 8 6 5 30 30 H 1.00902 * 111.00206 * 183.95155 * 8 6 5 31 31 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 32 32 H 1.08997 * 109.47878 * 180.02562 * 19 18 17 33 33 H 1.09003 * 109.47032 * 300.00024 * 19 18 17 34 34 H 1.08999 * 109.47262 * 59.99536 * 19 18 17 35 35 H 1.07995 * 120.04363 * 180.27405 * 20 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4586 2.0023 1.1796 5 6 2.9191 3.3046 1.1826 6 6 3.3828 3.9370 2.4695 7 1 3.0444 4.9724 2.5081 8 7 2.8238 3.1964 3.6083 9 6 4.8878 3.8977 2.5347 10 1 5.4522 3.4591 1.7251 11 6 5.5447 4.4274 3.6252 12 7 4.8575 4.9619 4.6109 13 14 7.4106 4.3856 3.7025 14 1 7.9423 3.7359 2.4776 15 1 7.9335 5.7726 3.7934 16 1 7.8394 3.6156 4.8977 17 6 2.9494 4.0325 0.0014 18 8 3.3966 5.3157 0.0043 19 6 3.3993 6.0046 -1.2476 20 6 2.5277 3.4469 -1.1827 21 6 2.0665 2.1421 -1.1815 22 9 1.6492 1.5722 -2.3331 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 2.4315 1.4377 2.0999 29 1 3.1232 2.2329 3.5950 30 1 3.0673 3.6387 4.4819 31 1 5.3196 5.3342 5.3783 32 1 3.7789 7.0163 -1.1049 33 1 4.0381 5.4735 -1.9532 34 1 2.3833 6.0494 -1.6399 35 1 2.5545 4.0100 -2.1039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260348210.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:07 Heat of formation + Delta-G solvation = -71.296533 kcal Electronic energy + Delta-G solvation = -18962.607103 eV Core-core repulsion = 15874.889087 eV Total energy + Delta-G solvation = -3087.718015 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.49277 -39.67573 -37.22723 -34.88440 -33.10311 -31.50995 -29.15731 -28.78961 -26.70631 -25.89299 -23.33115 -23.00075 -21.11662 -19.56007 -17.95981 -16.67935 -16.53240 -15.48032 -15.40386 -15.07546 -14.85751 -14.43966 -14.12760 -14.02990 -13.55328 -13.21286 -12.78335 -12.70263 -12.33027 -11.99682 -11.75522 -11.42192 -11.30571 -11.06582 -10.92817 -10.81239 -10.60448 -10.46725 -10.29560 -9.93343 -9.58985 -8.64606 -8.19827 -7.47844 -7.14762 -6.05240 -4.19931 1.78080 1.84145 3.23039 3.31709 3.36725 3.79813 4.16578 4.39333 4.72358 5.06047 5.11422 5.16675 5.34804 5.35594 5.44653 5.57291 5.60034 5.74412 5.80541 5.87060 6.07086 6.16993 6.22862 6.38911 6.49718 6.58971 6.69477 6.90589 7.03650 7.36112 7.67515 7.78259 7.98260 8.11797 8.69905 8.94576 9.11254 9.49965 10.92966 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022045 B = 0.007190 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.851256 B = 3893.544619 C = 4553.078990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 C -0.156 4.156 4 C -0.051 4.051 5 C -0.063 4.063 6 C 0.249 3.751 7 H 0.055 0.945 8 N -0.852 5.852 9 C -0.531 4.531 10 H 0.054 0.946 11 C 0.066 3.934 12 N -0.895 5.895 13 Si 0.895 3.105 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.149 3.851 18 O -0.288 6.288 19 C 0.026 3.974 20 C -0.249 4.249 21 C 0.105 3.895 22 F -0.148 7.148 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.139 0.861 29 H 0.310 0.690 30 H 0.357 0.643 31 H 0.264 0.736 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 -4.284 -9.219 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.157 4.157 4 C -0.069 4.069 5 C -0.064 4.064 6 C 0.139 3.861 7 H 0.073 0.927 8 N -0.382 5.382 9 C -0.571 4.571 10 H 0.072 0.928 11 C -0.136 4.136 12 N -0.535 5.535 13 Si 0.723 3.277 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.210 1.210 17 C 0.102 3.898 18 O -0.200 6.200 19 C -0.070 4.070 20 C -0.269 4.269 21 C 0.086 3.914 22 F -0.127 7.127 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.157 0.843 29 H 0.120 0.880 30 H 0.174 0.826 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.906 -3.891 -9.238 11.634 hybrid contribution 2.062 -0.042 -0.282 2.081 sum -3.844 -3.933 -9.520 10.994 Atomic orbital electron populations 1.21738 0.95172 1.01173 1.02210 1.20323 0.95912 0.92381 1.02500 1.19740 1.06332 0.97265 0.92407 1.20605 0.95832 0.93935 0.96530 1.20008 0.97828 0.93245 0.95344 1.17798 0.91746 0.93465 0.83053 0.92687 1.59584 1.64930 1.05188 1.08496 1.21767 0.91957 1.38900 1.04483 0.92772 1.24984 0.98535 0.94406 0.95698 1.69750 1.35374 1.39720 1.08625 0.86486 0.85506 0.77769 0.77921 1.19831 1.20906 1.21009 1.18594 0.94172 0.84267 0.92750 1.86317 1.79583 1.22476 1.31642 1.23003 1.00852 0.97337 0.85799 1.20944 1.11280 0.95984 0.98670 1.17018 1.01544 0.91599 0.81273 1.91400 1.88239 1.84978 1.48085 0.92807 0.92264 0.92916 0.91616 0.90822 0.84347 0.88040 0.82644 0.92604 0.88546 0.93198 0.93315 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.89 37.16 0.37 -1.46 16 2 C -0.07 -1.03 5.78 -27.88 -0.16 -1.19 16 3 C -0.16 -2.69 5.14 -104.53 -0.54 -3.23 16 4 C -0.05 -0.97 8.87 -39.62 -0.35 -1.32 16 5 C -0.06 -1.38 5.04 -104.46 -0.53 -1.90 16 6 C 0.25 6.22 2.61 -70.02 -0.18 6.04 16 7 H 0.06 1.55 7.84 -51.93 -0.41 1.14 16 8 N -0.85 -19.89 8.67 -6.65 -0.06 -19.95 16 9 C -0.53 -14.32 8.70 -34.44 -0.30 -14.62 16 10 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 11 C 0.07 1.77 5.38 -17.82 -0.10 1.67 16 12 N -0.90 -24.65 11.55 55.43 0.64 -24.01 16 13 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 C 0.15 3.03 6.65 -39.22 -0.26 2.77 16 18 O -0.29 -5.82 9.72 -19.39 -0.19 -6.00 16 19 C 0.03 0.36 9.81 101.05 0.99 1.36 16 20 C -0.25 -4.43 9.02 -39.36 -0.35 -4.78 16 21 C 0.10 1.84 7.24 -39.44 -0.29 1.56 16 22 F -0.15 -2.46 16.66 2.25 0.04 -2.42 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.88 7.94 -51.93 -0.41 0.47 16 27 H 0.07 0.94 8.00 -51.92 -0.42 0.53 16 28 H 0.14 2.52 6.22 -52.48 -0.33 2.19 16 29 H 0.31 6.76 7.28 -39.29 -0.29 6.47 16 30 H 0.36 8.97 7.09 -39.29 -0.28 8.69 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.64 7.65 -51.93 -0.40 0.24 16 34 H 0.05 0.60 7.67 -51.93 -0.40 0.20 16 35 H 0.13 1.96 6.30 -52.49 -0.33 1.63 16 LS Contribution 296.20 15.07 4.46 4.46 Total: -1.00 -28.46 296.20 -6.31 -34.76 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -4.48 Total: 12.22 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -1.70 Total: -15.12 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.58 Total: -43.96 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.19 Total: -6.00 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.46 -6.31 -34.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260348210.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.534 kcal (2) G-P(sol) polarization free energy of solvation -28.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds