Wall clock time and date at job start Mon Mar 30 2020 07:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47433 * 2 1 4 4 C 1.38249 * 119.95759 * 99.99808 * 3 2 1 5 5 C 1.38132 * 120.07918 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.00416 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47551 * 219.99960 * 6 5 4 8 8 N 1.46900 * 109.47395 * 340.00422 * 6 5 4 9 9 C 1.50702 * 109.46869 * 100.00014 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 6 5 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 6 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 6 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.38774 * 119.99700 * 0.25183 * 5 4 3 18 18 O 1.35889 * 120.04575 * 179.70445 * 17 5 4 19 19 C 1.42897 * 117.00354 * 180.02562 * 18 17 5 20 20 C 1.38671 * 119.91141 * 359.44904 * 17 5 4 21 21 C 1.38396 * 119.91825 * 0.57403 * 20 17 5 22 22 F 1.35094 * 119.99483 * 179.67864 * 21 20 17 23 23 H 1.08994 * 109.47458 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47351 * 300.00593 * 1 2 3 25 25 H 1.09004 * 109.46128 * 60.00132 * 1 2 3 26 26 H 1.08999 * 109.47351 * 239.99407 * 2 1 3 27 27 H 1.09008 * 109.46829 * 120.00051 * 2 1 3 28 28 H 1.08003 * 119.96424 * 0.02562 * 4 3 2 29 29 H 1.00903 * 111.00086 * 59.99217 * 8 6 5 30 30 H 1.00902 * 111.00206 * 183.95155 * 8 6 5 31 31 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 32 32 H 1.08997 * 109.47878 * 180.02562 * 19 18 17 33 33 H 1.09003 * 109.47032 * 300.00024 * 19 18 17 34 34 H 1.08999 * 109.47262 * 59.99536 * 19 18 17 35 35 H 1.07995 * 120.04363 * 180.27405 * 20 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4586 2.0023 1.1796 5 6 2.9191 3.3046 1.1826 6 6 3.3828 3.9370 2.4695 7 1 3.0444 4.9724 2.5081 8 7 2.8238 3.1964 3.6083 9 6 4.8878 3.8977 2.5347 10 1 5.4522 3.4591 1.7251 11 6 5.5447 4.4274 3.6252 12 7 4.8575 4.9619 4.6109 13 14 7.4106 4.3856 3.7025 14 1 7.9423 3.7359 2.4776 15 1 7.9335 5.7726 3.7934 16 1 7.8394 3.6156 4.8977 17 6 2.9494 4.0325 0.0014 18 8 3.3966 5.3157 0.0043 19 6 3.3993 6.0046 -1.2476 20 6 2.5277 3.4469 -1.1827 21 6 2.0665 2.1421 -1.1815 22 9 1.6492 1.5722 -2.3331 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 2.4315 1.4377 2.0999 29 1 3.1232 2.2329 3.5950 30 1 3.0673 3.6387 4.4819 31 1 5.3196 5.3342 5.3783 32 1 3.7789 7.0163 -1.1049 33 1 4.0381 5.4735 -1.9532 34 1 2.3833 6.0494 -1.6399 35 1 2.5545 4.0100 -2.1039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260348210.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:07 Heat of formation + Delta-G solvation = -88.902293 kcal Electronic energy + Delta-G solvation = -18963.370546 eV Core-core repulsion = 15874.889087 eV Total energy + Delta-G solvation = -3088.481458 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -49.85804 -41.13192 -38.64273 -36.67584 -34.44637 -33.39634 -30.76220 -30.09237 -28.01929 -27.78548 -24.80972 -24.44434 -22.57702 -21.11534 -19.36744 -18.58527 -18.10878 -17.07375 -16.83204 -16.48147 -16.28592 -16.04292 -15.72131 -15.38334 -14.82274 -14.69186 -14.38865 -14.27895 -13.67907 -13.38184 -13.25232 -13.01270 -12.79996 -12.71611 -12.57342 -12.38289 -11.96511 -11.92016 -11.74870 -11.53488 -11.37009 -10.69182 -9.68172 -9.23863 -8.85642 -8.07599 -6.32313 0.29622 0.40229 1.35942 1.39060 1.49918 2.37451 2.48719 2.72833 3.08683 3.31905 3.79534 3.85826 3.97689 4.20053 4.35183 4.39496 4.47775 4.56165 4.60230 4.69857 4.72685 4.87731 4.98240 5.07840 5.09121 5.23214 5.29151 5.40980 5.56245 5.67669 5.79172 5.91227 6.10237 6.56892 6.68517 6.94340 7.14364 7.42123 8.86541 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022045 B = 0.007190 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.851256 B = 3893.544619 C = 4553.078990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 C -0.152 4.152 4 C -0.052 4.052 5 C -0.100 4.100 6 C 0.259 3.741 7 H 0.011 0.989 8 N -0.842 5.842 9 C -0.543 4.543 10 H 0.040 0.960 11 C 0.022 3.978 12 N -0.917 5.917 13 Si 0.956 3.044 14 H -0.275 1.275 15 H -0.281 1.281 16 H -0.275 1.275 17 C 0.135 3.865 18 O -0.324 6.324 19 C 0.016 3.984 20 C -0.243 4.243 21 C 0.107 3.893 22 F -0.139 7.139 23 H 0.078 0.922 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.319 0.681 30 H 0.346 0.654 31 H 0.267 0.733 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.267 -5.472 -10.580 13.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C -0.153 4.153 4 C -0.070 4.070 5 C -0.101 4.101 6 C 0.148 3.852 7 H 0.029 0.971 8 N -0.371 5.371 9 C -0.583 4.583 10 H 0.059 0.941 11 C -0.177 4.177 12 N -0.557 5.557 13 Si 0.782 3.218 14 H -0.200 1.200 15 H -0.206 1.206 16 H -0.201 1.201 17 C 0.088 3.912 18 O -0.237 6.237 19 C -0.078 4.078 20 C -0.262 4.262 21 C 0.087 3.913 22 F -0.117 7.117 23 H 0.097 0.903 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.161 0.839 29 H 0.130 0.870 30 H 0.161 0.839 31 H 0.076 0.924 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.920 -5.089 -10.617 13.178 hybrid contribution 2.013 0.338 0.060 2.042 sum -3.907 -4.751 -10.557 12.218 Atomic orbital electron populations 1.21714 0.93939 1.02684 1.01602 1.20439 0.96882 0.90205 1.03658 1.20030 1.05036 0.98818 0.91449 1.20658 0.95675 0.93058 0.97642 1.19913 1.00675 0.94832 0.94675 1.17460 0.90804 0.91776 0.85122 0.97124 1.59528 1.64532 1.05484 1.07537 1.21929 0.93242 1.39004 1.04146 0.94124 1.25680 1.02545 0.94089 0.95409 1.69847 1.36832 1.40068 1.08975 0.85549 0.80637 0.77739 0.77901 1.19967 1.20645 1.20099 1.18694 0.94736 0.84623 0.93112 1.86263 1.79793 1.22716 1.34969 1.23341 1.02568 0.97766 0.84170 1.21131 1.10091 0.96225 0.98752 1.17128 1.00863 0.91585 0.81677 1.91427 1.88010 1.84779 1.47512 0.90290 0.92941 0.93458 0.90558 0.89605 0.83901 0.87000 0.83908 0.92397 0.86897 0.91827 0.91352 0.82564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.89 71.98 0.71 -2.46 16 2 C -0.07 -1.88 5.78 29.85 0.17 -1.71 16 3 C -0.15 -4.99 5.14 -19.81 -0.10 -5.09 16 4 C -0.05 -1.98 8.87 22.25 0.20 -1.78 16 5 C -0.10 -4.44 5.04 -19.76 -0.10 -4.54 16 6 C 0.26 13.38 2.61 43.42 0.11 13.49 16 7 H 0.01 0.65 7.84 -2.39 -0.02 0.63 16 8 N -0.84 -40.33 8.67 -174.96 -1.52 -41.85 16 9 C -0.54 -30.03 8.70 25.60 0.22 -29.80 16 10 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 11 C 0.02 1.23 5.38 84.66 0.46 1.68 16 12 N -0.92 -51.39 11.55 21.45 0.25 -51.15 16 13 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 14 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 17 C 0.13 5.51 6.65 22.50 0.15 5.66 16 18 O -0.32 -13.29 9.72 -92.30 -0.90 -14.18 16 19 C 0.02 0.43 9.81 113.37 1.11 1.54 16 20 C -0.24 -8.24 9.02 22.41 0.20 -8.04 16 21 C 0.11 3.53 7.24 22.36 0.16 3.69 16 22 F -0.14 -4.19 16.66 44.97 0.75 -3.44 16 23 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.08 1.79 7.94 -2.39 -0.02 1.77 16 27 H 0.09 1.97 8.00 -2.38 -0.02 1.95 16 28 H 0.14 5.15 6.22 -2.91 -0.02 5.13 16 29 H 0.32 14.12 7.28 -89.69 -0.65 13.47 16 30 H 0.35 17.90 7.09 -89.69 -0.64 17.26 16 31 H 0.27 14.15 8.31 -92.70 -0.77 13.38 16 32 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.06 1.53 7.65 -2.39 -0.02 1.51 16 34 H 0.07 1.56 7.67 -2.39 -0.02 1.54 16 35 H 0.16 4.32 6.30 -2.91 -0.02 4.30 16 Total: -1.00 -61.75 296.20 3.74 -58.01 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.17 Total: 34.42 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 3.30 Total: -27.36 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -1.27 Total: -92.99 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.90 Total: -14.18 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.75 Total: -3.44 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -61.75 3.74 -58.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260348210.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.889 kcal (2) G-P(sol) polarization free energy of solvation -61.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds