Wall clock time and date at job start Mon Mar 30 2020 07:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47267 * 2 1 4 4 C 1.38395 * 120.03559 * 269.97483 * 3 2 1 5 5 F 1.35095 * 119.99632 * 0.04498 * 4 3 2 6 6 C 1.38474 * 120.00489 * 180.02562 * 4 3 2 7 7 C 1.38249 * 120.08508 * 359.97438 * 6 4 3 8 8 C 1.50694 * 119.96050 * 180.02562 * 7 6 4 9 9 H 1.09004 * 109.47204 * 159.99669 * 8 7 6 10 10 N 1.46899 * 109.47440 * 39.99711 * 8 7 6 11 11 C 1.50707 * 109.46952 * 279.99324 * 8 7 6 12 12 H 1.07998 * 119.99671 * 0.02562 * 11 8 7 13 13 C 1.37872 * 119.99806 * 179.97438 * 11 8 7 14 14 N 1.31519 * 119.99738 * 180.02562 * 13 11 8 15 15 Si 1.86803 * 120.00473 * 0.02562 * 13 11 8 16 16 H 1.48496 * 109.47143 * 89.99761 * 15 13 11 17 17 H 1.48501 * 109.47051 * 209.99977 * 15 13 11 18 18 H 1.48497 * 109.46655 * 330.00073 * 15 13 11 19 19 C 1.38143 * 120.08078 * 359.78210 * 7 6 4 20 20 C 1.38660 * 120.04468 * 89.99563 * 3 2 1 21 21 O 1.35896 * 120.04337 * 359.95647 * 20 3 2 22 22 C 1.42905 * 117.00039 * 179.97438 * 21 20 3 23 23 H 1.09002 * 109.47363 * 60.00256 * 1 2 3 24 24 H 1.09006 * 109.47205 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47716 * 300.00264 * 1 2 3 26 26 H 1.09000 * 109.47592 * 239.99201 * 2 1 3 27 27 H 1.09002 * 109.46924 * 119.99107 * 2 1 3 28 28 H 1.07994 * 119.95600 * 179.97438 * 6 4 3 29 29 H 1.00906 * 110.99454 * 300.00336 * 10 8 7 30 30 H 1.00893 * 111.00074 * 63.95408 * 10 8 7 31 31 H 0.96999 * 119.99793 * 180.02562 * 14 13 11 32 32 H 1.07998 * 120.00377 * 180.23263 * 19 7 6 33 33 H 1.09001 * 109.47103 * 179.97438 * 22 21 20 34 34 H 1.09000 * 109.47187 * 300.00222 * 22 21 20 35 35 H 1.09001 * 109.46558 * 60.00270 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2637 2.0737 -1.1981 5 9 2.0384 1.4376 -2.3684 6 6 2.7258 3.3791 -1.1974 7 6 2.9562 4.0320 -0.0008 8 6 3.4585 5.4528 -0.0032 9 1 3.2483 5.9142 0.9617 10 7 2.7824 6.2094 -1.0654 11 6 4.9452 5.4594 -0.2500 12 1 5.4733 4.5280 -0.3913 13 6 5.6309 6.6547 -0.2964 14 7 6.9283 6.6605 -0.5122 15 14 4.7174 8.2658 -0.0526 16 1 4.7051 8.6143 1.3908 17 1 5.3992 9.3418 -0.8159 18 1 3.3218 8.1218 -0.5390 19 6 2.7216 3.3853 1.1972 20 6 2.2636 2.0753 1.2003 21 8 2.0368 1.4367 2.3782 22 6 2.2974 2.1721 3.5755 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5137 0.8901 28 1 2.9066 3.8877 -2.1327 29 1 2.9619 5.8011 -1.9705 30 1 1.7912 6.2745 -0.8882 31 1 7.4107 7.5014 -0.5445 32 1 2.8983 3.8979 2.1313 33 1 2.0752 1.5478 4.4410 34 1 3.3464 2.4672 3.5996 35 1 1.6688 3.0623 3.5992 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260359535.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:54 Heat of formation + Delta-G solvation = -82.320665 kcal Electronic energy + Delta-G solvation = -18869.989250 eV Core-core repulsion = 15781.793193 eV Total energy + Delta-G solvation = -3088.196058 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.96953 -41.29792 -38.82597 -36.69675 -34.68478 -33.58861 -30.95665 -30.21040 -28.37090 -27.98548 -25.34419 -23.50798 -22.74653 -21.63500 -19.01026 -18.78872 -18.10043 -17.05990 -17.01252 -16.78002 -16.53766 -16.35098 -15.86300 -15.51505 -15.21056 -14.82188 -14.47623 -14.06098 -13.90631 -13.67067 -13.25342 -13.08568 -12.85241 -12.66379 -12.57684 -12.43569 -12.08958 -11.83109 -11.71064 -11.57608 -11.30991 -10.74401 -9.56664 -9.23000 -8.92320 -8.23865 -6.38639 0.14181 0.31268 1.52594 1.60685 1.96413 2.19418 2.55918 2.61924 3.14405 3.35158 3.66103 3.79860 3.96053 4.15228 4.21858 4.37260 4.39708 4.40292 4.44313 4.48759 4.68117 4.75247 4.87120 4.96872 5.00733 5.04551 5.15531 5.34113 5.34605 5.46698 5.63669 5.75919 6.12315 6.33138 6.46050 6.76039 7.00997 7.39612 8.89386 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025853 B = 0.006623 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.798694 B = 4226.822858 C = 4776.565871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C -0.172 4.172 4 C 0.125 3.875 5 F -0.138 7.138 6 C -0.194 4.194 7 C -0.025 4.025 8 C 0.229 3.771 9 H 0.054 0.946 10 N -0.834 5.834 11 C -0.518 4.518 12 H 0.022 0.978 13 C 0.027 3.973 14 N -0.951 5.951 15 Si 0.931 3.069 16 H -0.298 1.298 17 H -0.317 1.317 18 H -0.154 1.154 19 C -0.217 4.217 20 C 0.156 3.844 21 O -0.316 6.316 22 C 0.017 3.983 23 H 0.046 0.954 24 H 0.077 0.923 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.336 0.664 30 H 0.333 0.667 31 H 0.263 0.737 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.054 0.946 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.202 -9.843 5.140 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 C -0.174 4.174 4 C 0.106 3.894 5 F -0.116 7.116 6 C -0.213 4.213 7 C -0.028 4.028 8 C 0.118 3.882 9 H 0.071 0.929 10 N -0.365 5.365 11 C -0.556 4.556 12 H 0.041 0.959 13 C -0.172 4.172 14 N -0.591 5.591 15 Si 0.756 3.244 16 H -0.225 1.225 17 H -0.245 1.245 18 H -0.075 1.075 19 C -0.236 4.236 20 C 0.110 3.890 21 O -0.229 6.229 22 C -0.077 4.077 23 H 0.065 0.935 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.071 0.929 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.072 0.928 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.713 -9.361 5.330 18.235 hybrid contribution 0.392 0.062 -0.370 0.543 sum -14.321 -9.299 4.960 17.781 Atomic orbital electron populations 1.21655 0.93515 1.02645 1.01532 1.20275 0.97209 0.90006 1.03162 1.19210 1.09518 0.99470 0.89182 1.17176 1.00760 0.90788 0.80697 1.91440 1.92425 1.81890 1.45860 1.20840 1.06614 0.94132 0.99759 1.20687 0.91557 0.98678 0.91876 1.18310 0.92159 0.84636 0.93065 0.92867 1.59756 1.14407 1.56689 1.05655 1.20895 0.91327 0.92684 1.50733 0.95946 1.25924 0.94933 1.03925 0.92394 1.70110 1.10002 1.28106 1.50851 0.86289 0.85861 0.75767 0.76513 1.22528 1.24534 1.07462 1.21349 1.07735 0.94904 0.99613 1.18434 0.94475 0.90144 0.85992 1.86003 1.82334 1.41981 1.12604 1.23391 1.01491 0.98510 0.84345 0.93482 0.90428 0.92737 0.91116 0.89956 0.85237 0.85005 0.85424 0.92871 0.83956 0.85212 0.92751 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.89 71.98 0.71 -2.17 16 2 C -0.07 -1.75 5.67 29.85 0.17 -1.58 16 3 C -0.17 -5.40 5.15 -19.73 -0.10 -5.51 16 4 C 0.13 4.29 7.24 22.36 0.16 4.45 16 5 F -0.14 -4.53 16.48 44.97 0.74 -3.79 16 6 C -0.19 -7.20 9.27 22.33 0.21 -6.99 16 7 C -0.03 -0.98 4.88 -19.89 -0.10 -1.08 16 8 C 0.23 9.79 2.35 43.42 0.10 9.90 16 9 H 0.05 2.25 7.43 -2.39 -0.02 2.23 16 10 N -0.83 -31.25 5.66 -174.95 -0.99 -32.24 16 11 C -0.52 -28.74 9.28 25.60 0.24 -28.50 16 12 H 0.02 1.42 7.98 -2.91 -0.02 1.39 16 13 C 0.03 1.55 5.47 84.65 0.46 2.01 16 14 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 15 Si 0.93 43.44 26.94 68.60 1.85 45.29 16 16 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 17 H -0.32 -15.46 7.11 99.48 0.71 -14.75 16 18 H -0.15 -6.26 5.17 99.48 0.51 -5.74 16 19 C -0.22 -7.42 8.66 22.38 0.19 -7.22 16 20 C 0.16 4.88 6.66 22.50 0.15 5.03 16 21 O -0.32 -8.33 9.54 -92.39 -0.88 -9.22 16 22 C 0.02 0.32 9.81 113.37 1.11 1.43 16 23 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.74 7.64 -2.39 -0.02 1.73 16 27 H 0.08 1.97 7.53 -2.39 -0.02 1.95 16 28 H 0.13 4.75 6.66 -2.91 -0.02 4.73 16 29 H 0.34 12.47 7.34 -89.69 -0.66 11.81 16 30 H 0.33 10.26 9.06 -89.70 -0.81 9.45 16 31 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 32 H 0.14 4.42 6.27 -2.91 -0.02 4.40 16 33 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.11 7.67 -2.39 -0.02 1.10 16 35 H 0.07 1.15 7.65 -2.39 -0.02 1.13 16 Total: -1.00 -67.42 292.38 3.78 -63.64 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -0.54 Total: 26.25 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 3.31 Total: -30.22 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -0.69 Total: -91.95 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.88 Total: -9.22 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.74 Total: -3.79 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.85 Total: 45.29 kcal Total: -67.42 3.78 -63.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260359535.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.684 kcal (2) G-P(sol) polarization free energy of solvation -67.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds