Wall clock time and date at job start Mon Mar 30 2020 07:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47344 * 2 1 4 4 C 1.38302 * 119.93700 * 90.00062 * 3 2 1 5 5 C 1.38291 * 120.02727 * 179.97438 * 4 3 2 6 6 F 1.35102 * 120.04550 * 180.02562 * 5 4 3 7 7 C 1.38943 * 119.90586 * 0.02562 * 5 4 3 8 8 O 1.35955 * 120.06396 * 180.02562 * 7 5 4 9 9 C 1.38626 * 119.87583 * 359.97438 * 7 5 4 10 10 C 1.50697 * 120.01498 * 180.02562 * 9 7 5 11 11 H 1.09004 * 109.47390 * 0.02562 * 10 9 7 12 12 C 1.50696 * 109.47319 * 240.00153 * 10 9 7 13 13 H 1.07999 * 119.99987 * 305.06325 * 12 10 9 14 14 C 1.37883 * 119.99892 * 125.06345 * 12 10 9 15 15 N 1.31517 * 119.99692 * 173.29905 * 14 12 10 16 16 Si 1.86799 * 119.99809 * 353.29372 * 14 12 10 17 17 H 1.48504 * 109.46813 * 85.10655 * 16 14 12 18 18 H 1.48504 * 109.47040 * 205.10116 * 16 14 12 19 19 H 1.48493 * 109.47381 * 325.10382 * 16 14 12 20 20 C 1.53004 * 109.46803 * 119.99995 * 10 9 7 21 21 N 1.46904 * 109.46818 * 184.94440 * 20 10 9 22 22 C 1.38214 * 119.93350 * 270.29329 * 3 2 1 23 23 H 1.09007 * 109.46816 * 60.00017 * 1 2 3 24 24 H 1.08994 * 109.47582 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46799 * 300.00432 * 1 2 3 26 26 H 1.08999 * 109.47000 * 239.99123 * 2 1 3 27 27 H 1.09007 * 109.46816 * 119.99983 * 2 1 3 28 28 H 1.07996 * 119.98500 * 359.97438 * 4 3 2 29 29 H 0.96689 * 114.00298 * 269.98013 * 8 7 5 30 30 H 0.97003 * 119.99639 * 180.02562 * 15 14 12 31 31 H 1.08997 * 109.47458 * 304.95015 * 20 10 9 32 32 H 1.09000 * 109.46503 * 64.95189 * 20 10 9 33 33 H 1.00901 * 110.99976 * 65.58762 * 21 20 10 34 34 H 1.00905 * 110.99560 * 189.53231 * 21 20 10 35 35 H 1.08000 * 119.96141 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2625 2.0715 1.1985 5 6 2.7240 3.3751 1.2007 6 9 2.9494 4.0109 2.3712 7 6 2.9556 4.0300 -0.0027 8 8 3.4098 5.3114 -0.0043 9 6 2.7236 3.3740 -1.2016 10 6 2.9742 4.0811 -2.5086 11 1 3.3325 5.0917 -2.3121 12 6 1.6924 4.1467 -3.2982 13 1 1.1456 3.2413 -3.5164 14 6 1.2176 5.3627 -3.7420 15 7 0.1737 5.4092 -4.5407 16 14 2.0569 6.9441 -3.2089 17 1 3.2022 7.2252 -4.1114 18 1 1.0867 8.0664 -3.2761 19 1 2.5489 6.7979 -1.8155 20 6 4.0280 3.3138 -3.3097 21 7 4.3589 4.0642 -4.5284 22 6 2.2565 2.0731 -1.1978 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 2.0817 1.5613 2.1330 29 1 2.7087 5.9773 -0.0046 30 1 -0.1601 6.2647 -4.8533 31 1 4.9258 3.1900 -2.7041 32 1 3.6352 2.3340 -3.5816 33 1 4.8088 4.9389 -4.3036 34 1 4.9319 3.5119 -5.1487 35 1 2.0710 1.5641 -2.1321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260394759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:31 Heat of formation + Delta-G solvation = -100.701255 kcal Electronic energy + Delta-G solvation = -19082.091642 eV Core-core repulsion = 15993.098542 eV Total energy + Delta-G solvation = -3088.993100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.88032 -40.90057 -38.10376 -37.03506 -34.18907 -34.18208 -32.46222 -29.74363 -29.10145 -26.03195 -24.69909 -24.11023 -22.17480 -20.88566 -19.59300 -19.13792 -17.76903 -17.54075 -16.97881 -16.58592 -16.20307 -16.10840 -15.34379 -15.10901 -15.09010 -14.77646 -14.56625 -14.17893 -13.93277 -13.66705 -13.27148 -13.17895 -12.74692 -12.64363 -12.53136 -12.02620 -11.92894 -11.77479 -11.61890 -11.29028 -11.00004 -10.60508 -9.56668 -9.37384 -9.23861 -8.16430 -6.15781 0.14213 0.30783 1.38770 1.43558 1.49319 2.44327 2.54183 3.09024 3.19036 3.41175 3.72546 3.86558 4.09247 4.29182 4.31458 4.40218 4.48451 4.56138 4.63673 4.69181 4.90968 4.98744 5.07247 5.10445 5.16930 5.20526 5.21969 5.44550 5.58020 5.67191 5.73612 5.90663 6.37638 6.48701 6.65500 6.80394 6.87507 7.47610 9.00164 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.018512 B = 0.008664 C = 0.007508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.191419 B = 3230.966059 C = 3728.335547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.058 4.058 4 C -0.151 4.151 5 C 0.062 3.938 6 F -0.144 7.144 7 C 0.036 3.964 8 O -0.498 6.498 9 C -0.051 4.051 10 C 0.044 3.956 11 H 0.050 0.950 12 C -0.467 4.467 13 H 0.034 0.966 14 C 0.023 3.977 15 N -0.951 5.951 16 Si 0.935 3.065 17 H -0.269 1.269 18 H -0.304 1.304 19 H -0.237 1.237 20 C 0.089 3.911 21 N -0.845 5.845 22 C -0.111 4.111 23 H 0.038 0.962 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.162 0.838 29 H 0.393 0.607 30 H 0.259 0.741 31 H 0.015 0.985 32 H 0.060 0.940 33 H 0.333 0.667 34 H 0.344 0.656 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.721 -8.023 10.574 14.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.058 4.058 4 C -0.170 4.170 5 C 0.042 3.958 6 F -0.122 7.122 7 C -0.010 4.010 8 O -0.310 6.310 9 C -0.052 4.052 10 C 0.025 3.975 11 H 0.068 0.932 12 C -0.505 4.505 13 H 0.053 0.947 14 C -0.174 4.174 15 N -0.592 5.592 16 Si 0.761 3.239 17 H -0.195 1.195 18 H -0.231 1.231 19 H -0.162 1.162 20 C -0.043 4.043 21 N -0.375 5.375 22 C -0.129 4.129 23 H 0.057 0.943 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.179 0.821 29 H 0.250 0.750 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.158 0.842 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.381 -8.144 10.389 14.255 hybrid contribution 0.489 1.501 0.190 1.590 sum 5.870 -6.643 10.579 13.802 Atomic orbital electron populations 1.21757 0.94391 1.02680 1.01626 1.20599 0.96333 0.90116 1.04437 1.20039 0.96840 0.97768 0.91171 1.21027 1.03375 0.92254 1.00325 1.18186 1.04297 0.93277 0.80048 1.91428 1.92744 1.82335 1.45735 1.18474 1.04336 0.86927 0.91260 1.84784 1.36759 1.13275 1.96170 1.20662 0.94727 0.94952 0.94906 1.18255 0.94962 0.95797 0.88530 0.93191 1.20732 1.05570 0.93230 1.30961 0.94733 1.25727 0.95124 1.02151 0.94375 1.70053 1.27361 1.26204 1.35585 0.85987 0.78184 0.78993 0.80698 1.19478 1.23137 1.16158 1.21706 0.95395 0.96916 0.90243 1.58339 1.53358 1.08218 1.17595 1.20934 0.99609 0.93838 0.98503 0.94285 0.90232 0.92523 0.90032 0.88481 0.82071 0.74982 0.93166 0.96746 0.92173 0.85472 0.84223 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.89 71.98 0.71 -2.38 16 2 C -0.08 -1.63 6.06 29.85 0.18 -1.44 16 3 C -0.06 -1.67 5.13 -19.86 -0.10 -1.77 16 4 C -0.15 -4.29 9.67 22.30 0.22 -4.08 16 5 C 0.06 2.10 7.31 22.45 0.16 2.26 16 6 F -0.14 -4.83 17.11 44.97 0.77 -4.06 16 7 C 0.04 1.37 6.68 22.53 0.15 1.52 16 8 O -0.50 -19.00 11.74 -93.05 -1.09 -20.09 16 9 C -0.05 -2.05 4.78 -19.78 -0.09 -2.15 16 10 C 0.04 1.95 2.10 -12.29 -0.03 1.92 16 11 H 0.05 2.26 3.53 -2.39 -0.01 2.25 16 12 C -0.47 -25.21 8.22 25.60 0.21 -24.99 16 13 H 0.03 2.08 7.86 -2.91 -0.02 2.06 16 14 C 0.02 1.28 5.47 84.66 0.46 1.75 16 15 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 16 Si 0.93 43.53 27.05 68.60 1.86 45.39 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 19 H -0.24 -9.78 4.86 99.48 0.48 -9.30 16 20 C 0.09 3.45 5.89 86.30 0.51 3.96 16 21 N -0.85 -31.82 9.30 -186.71 -1.74 -33.56 16 22 C -0.11 -3.94 8.47 22.26 0.19 -3.75 16 23 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 24 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16 27 H 0.10 1.53 8.08 -2.38 -0.02 1.51 16 28 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 29 H 0.39 13.11 7.73 -74.06 -0.57 12.53 16 30 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 33 H 0.33 11.89 9.08 -89.69 -0.81 11.08 16 34 H 0.34 10.58 9.08 -89.69 -0.81 9.76 16 35 H 0.12 4.51 7.52 -2.91 -0.02 4.49 16 Total: -1.00 -66.51 295.40 1.38 -65.13 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -1.29 Total: 34.83 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 2.57 Total: -29.15 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -1.44 Total: -92.05 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -1.09 Total: -20.09 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.77 Total: -4.06 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.86 Total: 45.39 kcal Total: -66.51 1.38 -65.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260394759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.570 kcal (2) G-P(sol) polarization free energy of solvation -66.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds