Wall clock time and date at job start Mon Mar 30 2020 06:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35946 * 117.00012 * 2 1 4 4 C 1.38664 * 120.06928 * 0.02562 * 3 2 1 5 5 C 1.38175 * 119.97598 * 179.97438 * 4 3 2 6 6 C 1.50694 * 119.95547 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47832 * 160.00368 * 6 5 4 8 8 N 1.46896 * 109.47280 * 39.99979 * 6 5 4 9 9 C 1.53006 * 109.47276 * 280.00038 * 6 5 4 10 10 C 1.50700 * 109.47478 * 184.99551 * 9 6 5 11 11 H 1.07996 * 119.99778 * 0.02562 * 10 9 6 12 12 C 1.37869 * 119.99922 * 179.97438 * 10 9 6 13 13 N 1.31513 * 120.00601 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99809 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47182 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47193 * 120.00075 * 14 12 10 17 17 H 1.48496 * 109.47241 * 239.99758 * 14 12 10 18 18 C 1.38267 * 120.09147 * 0.02562 * 5 4 3 19 19 C 1.38252 * 120.12609 * 359.95241 * 18 5 4 20 20 C 1.50709 * 119.98079 * 180.02562 * 19 18 5 21 21 C 1.38330 * 120.03351 * 359.79129 * 19 18 5 22 22 F 1.35097 * 120.04984 * 180.23360 * 21 19 18 23 23 H 1.09001 * 109.47103 * 300.00293 * 1 2 3 24 24 H 1.09004 * 109.47054 * 59.99797 * 1 2 3 25 25 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.08006 * 120.00463 * 359.95238 * 4 3 2 27 27 H 1.00899 * 111.00753 * 176.04619 * 8 6 5 28 28 H 1.00906 * 111.00086 * 300.00451 * 8 6 5 29 29 H 1.09000 * 109.47208 * 305.00080 * 9 6 5 30 30 H 1.09007 * 109.46734 * 64.99554 * 9 6 5 31 31 H 0.96996 * 120.00781 * 179.97438 * 13 12 10 32 32 H 1.08001 * 119.93251 * 179.97438 * 18 5 4 33 33 H 1.09001 * 109.46506 * 90.00165 * 20 19 18 34 34 H 1.09002 * 109.46909 * 209.99870 * 20 19 18 35 35 H 1.08998 * 109.47072 * 330.00125 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2924 2.3751 0.0005 5 6 1.9217 3.6053 0.0011 6 6 1.1021 4.8698 0.0011 7 1 1.7146 5.6999 0.3529 8 7 -0.0549 4.7034 0.8908 9 6 0.6150 5.1619 -1.4197 10 6 -0.1000 6.4883 -1.4429 11 1 -0.1969 7.0654 -0.5353 12 6 -0.6294 6.9654 -2.6231 13 7 -0.5110 6.2629 -3.7285 14 14 -1.5150 8.6099 -2.6520 15 1 -1.5115 9.1981 -1.2885 16 1 -0.8209 9.5295 -3.5890 17 1 -2.9160 8.4099 -3.1018 18 6 3.3025 3.6776 0.0005 19 6 4.0580 2.5197 0.0005 20 6 5.5628 2.6024 0.0005 21 6 3.4334 1.2855 0.0053 22 9 4.1713 0.1539 0.0100 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2138 2.3200 0.0002 27 1 -0.5852 5.5591 0.9584 28 1 -0.6389 3.9392 0.5856 29 1 1.4687 5.1973 -2.0964 30 1 -0.0687 4.3749 -1.7383 31 1 -0.8838 6.5983 -4.5588 32 1 3.7917 4.6404 0.0005 33 1 5.9255 2.6222 1.0282 34 1 5.9744 1.7336 -0.5134 35 1 5.8768 3.5110 -0.5133 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260431965.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:30 Heat of formation + Delta-G solvation = -76.081112 kcal Electronic energy + Delta-G solvation = -18563.766132 eV Core-core repulsion = 15475.840641 eV Total energy + Delta-G solvation = -3087.925490 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.50433 -39.91331 -37.82833 -35.47951 -32.68998 -31.62310 -29.82131 -28.14598 -27.38632 -26.47146 -24.46704 -22.12515 -21.62232 -19.49219 -17.82004 -17.03399 -16.65648 -16.39090 -15.97325 -14.90296 -14.86915 -14.66946 -14.38735 -13.88601 -13.57654 -13.27731 -12.94537 -12.77604 -12.60197 -12.17806 -11.95087 -11.83926 -11.72861 -11.31805 -11.08279 -10.98156 -10.69118 -10.58060 -10.32924 -9.93152 -9.23908 -8.53958 -8.36605 -8.02813 -7.67435 -6.14486 -4.19708 1.43076 1.56598 3.21724 3.28471 3.30337 3.33155 3.85016 4.33381 4.51490 4.86595 4.98421 5.16579 5.21782 5.25430 5.31025 5.38567 5.49228 5.58002 5.63358 5.67923 5.79819 6.00347 6.21305 6.27858 6.37603 6.50961 6.62799 6.89176 6.93507 7.37656 7.46869 7.51481 7.78459 7.94078 8.11978 8.24075 8.87127 9.46103 10.96063 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.026321 B = 0.005445 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.522761 B = 5141.337285 C = 5633.455604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.097 3.903 4 C -0.173 4.173 5 C -0.013 4.013 6 C 0.123 3.877 7 H 0.081 0.919 8 N -0.839 5.839 9 C 0.001 3.999 10 C -0.527 4.527 11 H 0.058 0.942 12 C 0.060 3.940 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.129 4.129 19 C -0.083 4.083 20 C -0.110 4.110 21 C 0.045 3.955 22 F -0.140 7.140 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.135 0.865 27 H 0.348 0.652 28 H 0.327 0.673 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.262 0.738 32 H 0.132 0.868 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.018 -8.627 7.389 12.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.052 3.948 4 C -0.193 4.193 5 C -0.014 4.014 6 C 0.012 3.988 7 H 0.099 0.901 8 N -0.368 5.368 9 C -0.038 4.038 10 C -0.565 4.565 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.528 5.528 14 Si 0.721 3.279 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.147 4.147 19 C -0.084 4.084 20 C -0.167 4.167 21 C 0.026 3.974 22 F -0.119 7.119 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.117 0.883 26 H 0.152 0.848 27 H 0.162 0.838 28 H 0.138 0.862 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.150 0.850 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.621 -8.999 7.780 13.157 hybrid contribution -1.316 1.032 -1.173 2.042 sum 4.306 -7.967 6.607 11.210 Atomic orbital electron populations 1.23094 0.78114 1.03746 1.01940 1.86064 1.21618 1.26144 1.89045 1.18915 0.90609 0.85415 0.99904 1.20881 1.00205 0.90817 1.07349 1.20017 0.93573 0.95083 0.92682 1.20597 0.91359 0.91812 0.95019 0.90055 1.59270 1.12898 1.10910 1.53681 1.19805 0.96731 0.96964 0.90253 1.21170 1.36113 1.04356 0.94864 0.92362 1.25019 0.96120 0.97411 0.95639 1.69975 1.45341 1.38013 0.99516 0.86521 0.79365 0.83833 0.78205 1.19615 1.20941 1.21009 1.20714 0.92974 0.97448 1.03587 1.19653 0.96824 0.90871 1.01050 1.20697 0.90133 1.03223 1.02610 1.16640 0.85735 0.82367 1.12689 1.91418 1.76529 1.49206 1.94705 0.92336 0.92246 0.88348 0.84765 0.83790 0.86174 0.96002 0.96470 0.92878 0.84991 0.90887 0.91344 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.98 10.36 -19.57 -0.20 -5.18 16 3 C 0.10 1.66 6.69 -39.17 -0.26 1.39 16 4 C -0.17 -2.96 8.28 -39.45 -0.33 -3.29 16 5 C -0.01 -0.23 4.95 -104.64 -0.52 -0.75 16 6 C 0.12 2.41 2.99 -68.87 -0.21 2.21 16 7 H 0.08 1.60 8.00 -51.93 -0.42 1.19 16 8 N -0.84 -14.94 9.02 -5.66 -0.05 -14.99 16 9 C 0.00 0.02 4.60 -27.88 -0.13 -0.11 16 10 C -0.53 -13.79 8.55 -34.44 -0.29 -14.08 16 11 H 0.06 1.47 7.15 -52.49 -0.38 1.09 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 14 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.13 -2.11 9.32 -39.57 -0.37 -2.48 16 19 C -0.08 -1.28 5.88 -104.58 -0.62 -1.90 16 20 C -0.11 -1.32 9.83 36.01 0.35 -0.96 16 21 C 0.05 0.77 7.25 -39.30 -0.28 0.48 16 22 F -0.14 -2.35 16.32 2.25 0.04 -2.32 16 23 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 24 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 25 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.13 2.12 4.90 -52.48 -0.26 1.86 16 27 H 0.35 6.31 7.90 -39.29 -0.31 6.00 16 28 H 0.33 5.51 7.34 -39.29 -0.29 5.22 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.13 1.94 8.03 -52.49 -0.42 1.52 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.79 7.64 -51.93 -0.40 0.40 16 35 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 LS Contribution 298.73 15.07 4.50 4.50 Total: -1.00 -29.81 298.73 -6.26 -36.07 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.51 Total: 7.89 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -1.76 Total: -16.64 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.69 Total: -40.01 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.20 Total: -5.18 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.81 -6.26 -36.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260431965.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.010 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds