Wall clock time and date at job start Mon Mar 30 2020 06:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35946 * 117.00012 * 2 1 4 4 C 1.38664 * 120.06928 * 0.02562 * 3 2 1 5 5 C 1.38175 * 119.97598 * 179.97438 * 4 3 2 6 6 C 1.50694 * 119.95547 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47832 * 160.00368 * 6 5 4 8 8 N 1.46896 * 109.47280 * 39.99979 * 6 5 4 9 9 C 1.53006 * 109.47276 * 280.00038 * 6 5 4 10 10 C 1.50700 * 109.47478 * 184.99551 * 9 6 5 11 11 H 1.07996 * 119.99778 * 0.02562 * 10 9 6 12 12 C 1.37869 * 119.99922 * 179.97438 * 10 9 6 13 13 N 1.31513 * 120.00601 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99809 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47182 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47193 * 120.00075 * 14 12 10 17 17 H 1.48496 * 109.47241 * 239.99758 * 14 12 10 18 18 C 1.38267 * 120.09147 * 0.02562 * 5 4 3 19 19 C 1.38252 * 120.12609 * 359.95241 * 18 5 4 20 20 C 1.50709 * 119.98079 * 180.02562 * 19 18 5 21 21 C 1.38330 * 120.03351 * 359.79129 * 19 18 5 22 22 F 1.35097 * 120.04984 * 180.23360 * 21 19 18 23 23 H 1.09001 * 109.47103 * 300.00293 * 1 2 3 24 24 H 1.09004 * 109.47054 * 59.99797 * 1 2 3 25 25 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.08006 * 120.00463 * 359.95238 * 4 3 2 27 27 H 1.00899 * 111.00753 * 176.04619 * 8 6 5 28 28 H 1.00906 * 111.00086 * 300.00451 * 8 6 5 29 29 H 1.09000 * 109.47208 * 305.00080 * 9 6 5 30 30 H 1.09007 * 109.46734 * 64.99554 * 9 6 5 31 31 H 0.96996 * 120.00781 * 179.97438 * 13 12 10 32 32 H 1.08001 * 119.93251 * 179.97438 * 18 5 4 33 33 H 1.09001 * 109.46506 * 90.00165 * 20 19 18 34 34 H 1.09002 * 109.46909 * 209.99870 * 20 19 18 35 35 H 1.08998 * 109.47072 * 330.00125 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2924 2.3751 0.0005 5 6 1.9217 3.6053 0.0011 6 6 1.1021 4.8698 0.0011 7 1 1.7146 5.6999 0.3529 8 7 -0.0549 4.7034 0.8908 9 6 0.6150 5.1619 -1.4197 10 6 -0.1000 6.4883 -1.4429 11 1 -0.1969 7.0654 -0.5353 12 6 -0.6294 6.9654 -2.6231 13 7 -0.5110 6.2629 -3.7285 14 14 -1.5150 8.6099 -2.6520 15 1 -1.5115 9.1981 -1.2885 16 1 -0.8209 9.5295 -3.5890 17 1 -2.9160 8.4099 -3.1018 18 6 3.3025 3.6776 0.0005 19 6 4.0580 2.5197 0.0005 20 6 5.5628 2.6024 0.0005 21 6 3.4334 1.2855 0.0053 22 9 4.1713 0.1539 0.0100 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2138 2.3200 0.0002 27 1 -0.5852 5.5591 0.9584 28 1 -0.6389 3.9392 0.5856 29 1 1.4687 5.1973 -2.0964 30 1 -0.0687 4.3749 -1.7383 31 1 -0.8838 6.5983 -4.5588 32 1 3.7917 4.6404 0.0005 33 1 5.9255 2.6222 1.0282 34 1 5.9744 1.7336 -0.5134 35 1 5.8768 3.5110 -0.5133 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260431965.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:30 Heat of formation + Delta-G solvation = -95.025989 kcal Electronic energy + Delta-G solvation = -18564.587643 eV Core-core repulsion = 15475.840641 eV Total energy + Delta-G solvation = -3088.747002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.80741 -41.17351 -39.10002 -37.01718 -34.60885 -32.89432 -31.12032 -29.94343 -28.57385 -27.55451 -26.20213 -23.70163 -22.95244 -20.93851 -19.17446 -18.60724 -18.01408 -17.91879 -17.18835 -16.59816 -16.35064 -16.08080 -15.59882 -15.34861 -14.75260 -14.64819 -14.31898 -14.20622 -14.01725 -13.89637 -13.31698 -13.07670 -12.86175 -12.81903 -12.64306 -12.45891 -12.14489 -12.13668 -11.95141 -11.62644 -11.17132 -10.62451 -9.67831 -9.44482 -9.09852 -8.22071 -6.34129 0.12594 0.27198 1.39737 1.41931 1.53567 2.17465 2.38440 2.54802 3.11800 3.23886 3.64557 3.69682 3.92791 4.20905 4.24060 4.30676 4.34139 4.35175 4.50173 4.67526 4.77423 4.79412 4.83200 4.95895 5.00050 5.18680 5.27438 5.38004 5.41698 5.68174 5.68365 5.74980 6.14304 6.27349 6.35887 6.69304 6.82703 7.36350 8.89144 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.026321 B = 0.005445 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.522761 B = 5141.337285 C = 5633.455604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.092 3.908 4 C -0.180 4.180 5 C -0.032 4.032 6 C 0.138 3.862 7 H 0.082 0.918 8 N -0.828 5.828 9 C 0.011 3.989 10 C -0.534 4.534 11 H 0.069 0.931 12 C 0.003 3.997 13 N -0.932 5.932 14 Si 0.963 3.037 15 H -0.258 1.258 16 H -0.284 1.284 17 H -0.282 1.282 18 C -0.135 4.135 19 C -0.077 4.077 20 C -0.110 4.110 21 C 0.029 3.971 22 F -0.141 7.141 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.128 0.872 26 H 0.141 0.859 27 H 0.348 0.652 28 H 0.333 0.667 29 H -0.011 1.011 30 H -0.007 1.007 31 H 0.262 0.738 32 H 0.147 0.853 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.170 -8.213 8.497 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.045 3.955 4 C -0.199 4.199 5 C -0.033 4.033 6 C 0.027 3.973 7 H 0.100 0.900 8 N -0.356 5.356 9 C -0.028 4.028 10 C -0.572 4.572 11 H 0.087 0.913 12 C -0.195 4.195 13 N -0.572 5.572 14 Si 0.788 3.212 15 H -0.181 1.181 16 H -0.210 1.210 17 H -0.208 1.208 18 C -0.154 4.154 19 C -0.078 4.078 20 C -0.166 4.166 21 C 0.009 3.991 22 F -0.120 7.120 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.146 0.854 26 H 0.159 0.841 27 H 0.161 0.839 28 H 0.145 0.855 29 H 0.008 0.992 30 H 0.011 0.989 31 H 0.071 0.929 32 H 0.165 0.835 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.768 -8.593 8.912 13.658 hybrid contribution -1.358 0.814 -1.511 2.189 sum 4.410 -7.779 7.401 11.608 Atomic orbital electron populations 1.23394 0.76095 1.05891 1.02239 1.86053 1.23741 1.25624 1.88846 1.19048 0.90954 0.85813 0.99650 1.20938 1.00666 0.90690 1.07620 1.19989 0.94319 0.94586 0.94402 1.20304 0.92008 0.92875 0.92140 0.90030 1.59262 1.12664 1.11056 1.52658 1.19673 0.94816 0.95648 0.92644 1.21579 1.35441 1.05006 0.95138 0.91326 1.25926 0.97101 1.01143 0.95349 1.70112 1.46825 1.40054 1.00222 0.85422 0.77855 0.79221 0.78674 1.18131 1.20985 1.20802 1.20929 0.92509 0.98575 1.03363 1.19997 0.98694 0.89903 0.99217 1.20808 0.87498 1.04193 1.04093 1.16947 0.86006 0.82895 1.13268 1.91407 1.76494 1.49330 1.94769 0.91339 0.92604 0.85364 0.84094 0.83864 0.85509 0.99216 0.98909 0.92908 0.83478 0.88996 0.90990 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.51 16 2 O -0.33 -10.15 10.36 -92.94 -0.96 -11.12 16 3 C 0.09 3.08 6.69 22.53 0.15 3.23 16 4 C -0.18 -6.11 8.28 22.36 0.19 -5.93 16 5 C -0.03 -1.15 4.95 -19.87 -0.10 -1.25 16 6 C 0.14 5.38 2.99 44.17 0.13 5.51 16 7 H 0.08 3.16 8.00 -2.39 -0.02 3.14 16 8 N -0.83 -28.78 9.02 -171.81 -1.55 -30.33 16 9 C 0.01 0.53 4.60 29.85 0.14 0.67 16 10 C -0.53 -27.89 8.55 25.60 0.22 -27.67 16 11 H 0.07 3.38 7.15 -2.91 -0.02 3.36 16 12 C 0.00 0.16 5.46 84.65 0.46 0.63 16 13 N -0.93 -54.84 13.29 21.44 0.28 -54.56 16 14 Si 0.96 42.26 29.54 68.60 2.03 44.28 16 15 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 18 C -0.14 -4.31 9.32 22.28 0.21 -4.10 16 19 C -0.08 -2.29 5.88 -19.84 -0.12 -2.41 16 20 C -0.11 -2.38 9.83 71.24 0.70 -1.68 16 21 C 0.03 0.95 7.25 22.45 0.16 1.11 16 22 F -0.14 -4.63 16.32 44.97 0.73 -3.89 16 23 H 0.07 1.37 7.66 -2.39 -0.02 1.35 16 24 H 0.06 1.27 7.66 -2.38 -0.02 1.25 16 25 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.14 4.43 4.90 -2.91 -0.01 4.41 16 27 H 0.35 12.19 7.90 -89.69 -0.71 11.48 16 28 H 0.33 11.02 7.34 -89.69 -0.66 10.36 16 29 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 31 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.15 4.13 8.03 -2.91 -0.02 4.11 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.52 7.64 -2.39 -0.02 1.50 16 35 H 0.09 1.68 8.08 -2.39 -0.02 1.66 16 Total: -1.00 -63.57 298.73 3.54 -60.03 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.25 Total: 25.96 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 3.25 Total: -30.38 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -1.26 Total: -84.88 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.96 Total: -11.12 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.73 Total: -3.89 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -63.57 3.54 -60.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260431965.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.000 kcal (2) G-P(sol) polarization free energy of solvation -63.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds