Wall clock time and date at job start Mon Mar 30 2020 07:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35897 * 117.00493 * 2 1 4 4 C 1.38711 * 120.03892 * 0.02686 * 3 2 1 5 5 C 1.38348 * 119.92155 * 179.97438 * 4 3 2 6 6 F 1.35096 * 119.99791 * 179.97438 * 5 4 3 7 7 C 1.38513 * 120.00325 * 359.73551 * 5 4 3 8 8 C 1.38210 * 120.08665 * 0.53906 * 7 5 4 9 9 C 1.50698 * 119.96471 * 179.73162 * 8 7 5 10 10 H 1.09001 * 109.47556 * 144.72465 * 9 8 7 11 11 N 1.46905 * 109.46910 * 24.72504 * 9 8 7 12 12 C 1.52998 * 109.47049 * 264.72786 * 9 8 7 13 13 C 1.50698 * 109.47017 * 184.99831 * 12 9 8 14 14 H 1.08005 * 120.00198 * 359.97438 * 13 12 9 15 15 C 1.37882 * 120.00008 * 180.02562 * 13 12 9 16 16 N 1.31521 * 119.99866 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99970 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47471 * 90.00010 * 17 15 13 19 19 H 1.48503 * 109.47271 * 209.99824 * 17 15 13 20 20 H 1.48494 * 109.47271 * 329.99600 * 17 15 13 21 21 C 1.38181 * 120.07707 * 359.45411 * 8 7 5 22 22 C 1.50702 * 120.00325 * 180.25084 * 21 8 7 23 23 H 1.08995 * 109.47102 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46563 * 299.99764 * 1 2 3 25 25 H 1.08989 * 109.47259 * 59.99195 * 1 2 3 26 26 H 1.07998 * 120.04107 * 359.95839 * 4 3 2 27 27 H 1.07994 * 119.95906 * 180.29491 * 7 5 4 28 28 H 1.00901 * 110.99869 * 300.00472 * 11 9 8 29 29 H 1.00896 * 110.99543 * 63.95595 * 11 9 8 30 30 H 1.09001 * 109.47115 * 304.99584 * 12 9 8 31 31 H 1.09003 * 109.47470 * 64.99668 * 12 9 8 32 32 H 0.96995 * 119.99589 * 179.97438 * 16 15 13 33 33 H 1.09006 * 109.46957 * 90.00072 * 22 21 8 34 34 H 1.08997 * 109.46975 * 210.00266 * 22 21 8 35 35 H 1.08999 * 109.46789 * 330.00508 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3747 0.0006 5 6 1.9222 3.6060 0.0011 6 9 1.1888 4.7406 0.0011 7 6 3.3055 3.6757 0.0066 8 6 4.0576 2.5162 0.0003 9 6 5.5626 2.5951 0.0002 10 1 5.9696 1.7733 0.5893 11 7 5.9858 3.8741 0.5861 12 6 6.0783 2.4970 -1.4369 13 6 7.5846 2.4524 -1.4280 14 1 8.1205 2.4907 -0.4911 15 6 8.2787 2.3638 -2.6161 16 7 7.6261 2.3176 -3.7570 17 14 10.1458 2.3092 -2.6051 18 1 10.5994 0.8976 -2.5221 19 1 10.6663 2.9238 -3.8528 20 1 10.6562 3.0629 -1.4319 21 6 3.4313 1.2844 -0.0001 22 6 4.2531 0.0212 -0.0012 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8898 26 1 0.2129 2.3198 0.0003 27 1 3.7971 4.6372 0.0118 28 1 5.6208 4.6523 0.0575 29 1 5.7128 3.9357 1.5554 30 1 5.6907 1.5900 -1.9008 31 1 5.7438 3.3662 -2.0032 32 1 8.1144 2.2557 -4.5928 33 1 4.4517 -0.2840 1.0262 34 1 3.7049 -0.7683 -0.5153 35 1 5.1970 0.2023 -0.5153 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260446187.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:41 Heat of formation + Delta-G solvation = -68.038352 kcal Electronic energy + Delta-G solvation = -18670.666280 eV Core-core repulsion = 15583.089550 eV Total energy + Delta-G solvation = -3087.576730 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.79136 -40.25047 -38.01038 -34.88441 -32.42741 -32.31562 -29.49017 -28.38505 -27.57142 -26.20573 -24.41258 -22.16234 -21.39403 -19.86081 -17.89667 -17.01021 -16.32349 -15.93821 -15.85341 -15.32991 -15.29348 -14.93727 -14.43889 -14.34458 -14.00482 -13.29195 -13.25337 -12.64588 -12.18158 -11.99053 -11.82602 -11.76136 -11.33952 -11.19113 -11.05028 -10.95417 -10.59110 -10.49623 -10.25080 -9.60396 -9.08373 -8.35706 -8.29356 -8.04133 -7.96817 -5.91528 -3.90708 1.30952 1.44577 3.20874 3.38754 3.45089 3.50255 3.71298 4.34099 4.54540 4.79732 4.92462 5.02193 5.09618 5.10748 5.28934 5.34418 5.40729 5.48322 5.58418 5.92072 6.04079 6.13126 6.14069 6.16480 6.41808 6.56655 6.67696 6.76096 6.94951 7.37718 7.51770 7.69059 7.94810 8.08097 8.13742 8.50536 9.15440 9.71484 11.20134 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.026401 B = 0.005691 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.330000 B = 4918.854951 C = 5464.212037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.152 3.848 4 C -0.257 4.257 5 C 0.130 3.870 6 F -0.143 7.143 7 C -0.192 4.192 8 C -0.035 4.035 9 C 0.131 3.869 10 H 0.089 0.911 11 N -0.821 5.821 12 C 0.037 3.963 13 C -0.495 4.495 14 H 0.063 0.937 15 C 0.051 3.949 16 N -0.902 5.902 17 Si 0.892 3.108 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.273 1.273 21 C -0.115 4.115 22 C -0.112 4.112 23 H 0.099 0.901 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.335 0.665 29 H 0.324 0.676 30 H 0.025 0.975 31 H 0.017 0.983 32 H 0.258 0.742 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.848 -2.270 8.651 16.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.107 3.893 4 C -0.276 4.276 5 C 0.111 3.889 6 F -0.121 7.121 7 C -0.211 4.211 8 C -0.037 4.037 9 C 0.019 3.981 10 H 0.107 0.893 11 N -0.348 5.348 12 C 0.000 4.000 13 C -0.533 4.533 14 H 0.082 0.918 15 C -0.148 4.148 16 N -0.542 5.542 17 Si 0.721 3.279 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.198 1.198 21 C -0.117 4.117 22 C -0.169 4.169 23 H 0.118 0.882 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.135 0.865 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.995 -2.662 8.296 15.645 hybrid contribution -0.693 0.635 -0.086 0.944 sum -13.688 -2.027 8.210 16.089 Atomic orbital electron populations 1.23056 0.78731 1.03819 1.01319 1.86100 1.21036 1.26439 1.88537 1.18525 0.91559 0.83485 0.95765 1.20935 1.00462 0.91274 1.14979 1.17269 0.89086 0.81263 1.01321 1.91467 1.77433 1.49329 1.93904 1.20856 0.91462 1.00078 1.08689 1.21050 0.99715 0.90642 0.92311 1.20928 0.83757 0.92335 1.01089 0.89343 1.58840 1.67104 1.03759 1.05136 1.19160 0.96421 0.97556 0.86890 1.21135 0.90950 1.48609 0.92649 0.91844 1.25019 0.98274 0.95859 0.95696 1.69974 1.35272 1.51575 0.97368 0.86583 0.86071 0.77963 0.77296 1.20910 1.21551 1.19828 1.19204 0.90025 0.96468 1.05976 1.20742 1.00401 0.93601 1.02127 0.88233 0.92786 0.92649 0.84808 0.84932 0.85055 0.86505 0.95662 0.96466 0.93211 0.91674 0.91484 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.21 9.54 -19.42 -0.19 -4.39 16 3 C 0.15 2.35 6.66 -39.23 -0.26 2.09 16 4 C -0.26 -3.73 9.02 -39.37 -0.35 -4.08 16 5 C 0.13 2.04 7.30 -39.44 -0.29 1.76 16 6 F -0.14 -2.19 17.27 2.25 0.04 -2.15 16 7 C -0.19 -3.16 9.25 -39.49 -0.37 -3.53 16 8 C -0.03 -0.61 5.05 -104.65 -0.53 -1.14 16 9 C 0.13 2.56 2.23 -68.86 -0.15 2.41 16 10 H 0.09 1.73 6.99 -51.93 -0.36 1.37 16 11 N -0.82 -14.79 8.54 -5.65 -0.05 -14.84 16 12 C 0.04 0.92 4.35 -27.89 -0.12 0.79 16 13 C -0.49 -13.63 8.84 -34.44 -0.30 -13.93 16 14 H 0.06 1.74 7.74 -52.48 -0.41 1.33 16 15 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 16 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 17 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.12 -1.95 5.89 -104.46 -0.62 -2.57 16 22 C -0.11 -1.79 8.99 36.01 0.32 -1.47 16 23 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 25 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 26 H 0.13 1.59 6.30 -52.49 -0.33 1.26 16 27 H 0.13 2.04 6.28 -52.49 -0.33 1.71 16 28 H 0.34 5.83 7.21 -39.29 -0.28 5.55 16 29 H 0.32 4.89 9.06 -39.29 -0.36 4.53 16 30 H 0.03 0.67 7.02 -51.93 -0.36 0.30 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.01 7.53 -51.93 -0.39 0.62 16 35 H 0.09 1.58 5.48 -51.93 -0.28 1.30 16 LS Contribution 293.99 15.07 4.43 4.43 Total: -1.00 -30.73 293.99 -6.13 -36.86 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -4.31 Total: 6.61 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -1.77 Total: -17.08 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.69 Total: -41.09 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.19 Total: -4.39 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.73 -6.13 -36.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446187.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.175 kcal (2) G-P(sol) polarization free energy of solvation -30.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds