Wall clock time and date at job start Mon Mar 30 2020 07:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35897 * 117.00493 * 2 1 4 4 C 1.38711 * 120.03892 * 0.02686 * 3 2 1 5 5 C 1.38348 * 119.92155 * 179.97438 * 4 3 2 6 6 F 1.35096 * 119.99791 * 179.97438 * 5 4 3 7 7 C 1.38513 * 120.00325 * 359.73551 * 5 4 3 8 8 C 1.38210 * 120.08665 * 0.53906 * 7 5 4 9 9 C 1.50698 * 119.96471 * 179.73162 * 8 7 5 10 10 H 1.09001 * 109.47556 * 144.72465 * 9 8 7 11 11 N 1.46905 * 109.46910 * 24.72504 * 9 8 7 12 12 C 1.52998 * 109.47049 * 264.72786 * 9 8 7 13 13 C 1.50698 * 109.47017 * 184.99831 * 12 9 8 14 14 H 1.08005 * 120.00198 * 359.97438 * 13 12 9 15 15 C 1.37882 * 120.00008 * 180.02562 * 13 12 9 16 16 N 1.31521 * 119.99866 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99970 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47471 * 90.00010 * 17 15 13 19 19 H 1.48503 * 109.47271 * 209.99824 * 17 15 13 20 20 H 1.48494 * 109.47271 * 329.99600 * 17 15 13 21 21 C 1.38181 * 120.07707 * 359.45411 * 8 7 5 22 22 C 1.50702 * 120.00325 * 180.25084 * 21 8 7 23 23 H 1.08995 * 109.47102 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46563 * 299.99764 * 1 2 3 25 25 H 1.08989 * 109.47259 * 59.99195 * 1 2 3 26 26 H 1.07998 * 120.04107 * 359.95839 * 4 3 2 27 27 H 1.07994 * 119.95906 * 180.29491 * 7 5 4 28 28 H 1.00901 * 110.99869 * 300.00472 * 11 9 8 29 29 H 1.00896 * 110.99543 * 63.95595 * 11 9 8 30 30 H 1.09001 * 109.47115 * 304.99584 * 12 9 8 31 31 H 1.09003 * 109.47470 * 64.99668 * 12 9 8 32 32 H 0.96995 * 119.99589 * 179.97438 * 16 15 13 33 33 H 1.09006 * 109.46957 * 90.00072 * 22 21 8 34 34 H 1.08997 * 109.46975 * 210.00266 * 22 21 8 35 35 H 1.08999 * 109.46789 * 330.00508 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3747 0.0006 5 6 1.9222 3.6060 0.0011 6 9 1.1888 4.7406 0.0011 7 6 3.3055 3.6757 0.0066 8 6 4.0576 2.5162 0.0003 9 6 5.5626 2.5951 0.0002 10 1 5.9696 1.7733 0.5893 11 7 5.9858 3.8741 0.5861 12 6 6.0783 2.4970 -1.4369 13 6 7.5846 2.4524 -1.4280 14 1 8.1205 2.4907 -0.4911 15 6 8.2787 2.3638 -2.6161 16 7 7.6261 2.3176 -3.7570 17 14 10.1458 2.3092 -2.6051 18 1 10.5994 0.8976 -2.5221 19 1 10.6663 2.9238 -3.8528 20 1 10.6562 3.0629 -1.4319 21 6 3.4313 1.2844 -0.0001 22 6 4.2531 0.0212 -0.0012 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8898 26 1 0.2129 2.3198 0.0003 27 1 3.7971 4.6372 0.0118 28 1 5.6208 4.6523 0.0575 29 1 5.7128 3.9357 1.5554 30 1 5.6907 1.5900 -1.9008 31 1 5.7438 3.3662 -2.0032 32 1 8.1144 2.2557 -4.5928 33 1 4.4517 -0.2840 1.0262 34 1 3.7049 -0.7683 -0.5153 35 1 5.1970 0.2023 -0.5153 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260446187.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:38 Heat of formation + Delta-G solvation = -88.100412 kcal Electronic energy + Delta-G solvation = -18671.536237 eV Core-core repulsion = 15583.089550 eV Total energy + Delta-G solvation = -3088.446686 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -50.00567 -41.42561 -39.22916 -36.39725 -34.46210 -33.56774 -30.76630 -30.22079 -28.49681 -27.49879 -26.14173 -23.73579 -22.67802 -21.31247 -19.16212 -18.30088 -18.20672 -17.20649 -17.00224 -16.59260 -16.51661 -16.38615 -16.14336 -15.55916 -15.38841 -14.76942 -14.49864 -14.08677 -13.92433 -13.31707 -13.14189 -12.99667 -12.86807 -12.70381 -12.52309 -12.33854 -12.19218 -12.10662 -11.93866 -11.37134 -11.17013 -10.48560 -9.70264 -9.47825 -9.18407 -8.09508 -6.15543 0.05065 0.20880 1.45202 1.46175 1.57837 2.22945 2.43775 2.51185 3.12903 3.24288 3.61545 3.80542 3.88594 3.93781 4.11257 4.26377 4.35654 4.37950 4.58203 4.69552 4.71080 4.79827 4.84227 4.90395 4.93662 5.17738 5.30093 5.42103 5.52272 5.65036 5.72412 5.89454 6.28748 6.31830 6.48438 6.78989 6.98643 7.51105 9.02423 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.026401 B = 0.005691 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.330000 B = 4918.854951 C = 5464.212037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.320 6.320 3 C 0.154 3.846 4 C -0.246 4.246 5 C 0.124 3.876 6 F -0.140 7.140 7 C -0.199 4.199 8 C -0.050 4.050 9 C 0.147 3.853 10 H 0.087 0.913 11 N -0.828 5.828 12 C 0.047 3.953 13 C -0.504 4.504 14 H 0.063 0.937 15 C -0.004 4.004 16 N -0.940 5.940 17 Si 0.960 3.040 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.266 1.266 21 C -0.132 4.132 22 C -0.106 4.106 23 H 0.125 0.875 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.164 0.836 27 H 0.138 0.862 28 H 0.338 0.662 29 H 0.343 0.657 30 H 0.001 0.999 31 H -0.014 1.014 32 H 0.259 0.741 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.794 -2.600 9.801 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.233 6.233 3 C 0.108 3.892 4 C -0.266 4.266 5 C 0.105 3.895 6 F -0.118 7.118 7 C -0.218 4.218 8 C -0.053 4.053 9 C 0.035 3.965 10 H 0.104 0.896 11 N -0.358 5.358 12 C 0.009 3.991 13 C -0.542 4.542 14 H 0.081 0.919 15 C -0.201 4.201 16 N -0.581 5.581 17 Si 0.786 3.214 18 H -0.200 1.200 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.134 4.134 22 C -0.163 4.163 23 H 0.143 0.857 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.182 0.818 27 H 0.156 0.844 28 H 0.153 0.847 29 H 0.156 0.844 30 H 0.020 0.980 31 H 0.005 0.995 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.956 -2.995 9.475 17.132 hybrid contribution -0.534 0.698 -0.429 0.978 sum -14.490 -2.297 9.046 17.236 Atomic orbital electron populations 1.23439 0.76167 1.06011 1.02400 1.86096 1.23637 1.25446 1.88099 1.18502 0.91123 0.84551 0.95003 1.21215 1.01979 0.90294 1.13072 1.17329 0.88835 0.81868 1.01473 1.91474 1.77208 1.49269 1.93895 1.20920 0.92127 0.99926 1.08811 1.20753 0.98416 0.91620 0.94504 1.20428 0.85358 0.93055 0.97661 0.89555 1.58736 1.67465 1.03163 1.06402 1.18932 0.95298 0.94885 0.89948 1.21481 0.92441 1.47698 0.92566 0.91869 1.25882 1.03163 0.95647 0.95383 1.70109 1.37141 1.52902 0.97986 0.85520 0.80264 0.78315 0.77344 1.19976 1.21434 1.19037 1.19371 0.91278 0.96315 1.06399 1.20666 0.99029 0.93672 1.02910 0.85698 0.91259 0.91884 0.81807 0.84424 0.84737 0.84369 0.98043 0.99532 0.93228 0.89923 0.90905 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -7.99 9.54 -92.39 -0.88 -8.87 16 3 C 0.15 4.50 6.66 22.50 0.15 4.65 16 4 C -0.25 -6.56 9.02 22.41 0.20 -6.36 16 5 C 0.12 3.72 7.30 22.36 0.16 3.88 16 6 F -0.14 -4.03 17.27 44.97 0.78 -3.26 16 7 C -0.20 -6.46 9.25 22.33 0.21 -6.25 16 8 C -0.05 -1.78 5.05 -19.89 -0.10 -1.88 16 9 C 0.15 5.86 2.23 44.17 0.10 5.96 16 10 H 0.09 3.44 6.99 -2.39 -0.02 3.42 16 11 N -0.83 -29.74 8.54 -171.80 -1.47 -31.21 16 12 C 0.05 2.40 4.35 29.85 0.13 2.53 16 13 C -0.50 -28.24 8.84 25.60 0.23 -28.01 16 14 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 15 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 16 N -0.94 -57.57 13.29 21.45 0.28 -57.28 16 17 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 18 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 21 C -0.13 -4.42 5.89 -19.76 -0.12 -4.54 16 22 C -0.11 -3.40 8.99 71.24 0.64 -2.76 16 23 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 25 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 26 H 0.16 3.28 6.30 -2.91 -0.02 3.26 16 27 H 0.14 4.20 6.28 -2.91 -0.02 4.19 16 28 H 0.34 11.81 7.21 -89.69 -0.65 11.17 16 29 H 0.34 10.06 9.06 -89.70 -0.81 9.25 16 30 H 0.00 0.08 7.02 -2.39 -0.02 0.06 16 31 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.28 16 33 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.07 2.18 7.53 -2.39 -0.02 2.17 16 35 H 0.06 2.28 5.48 -2.39 -0.01 2.27 16 Total: -1.00 -66.27 293.99 3.59 -62.68 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -0.33 Total: 22.08 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 3.17 Total: -31.25 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -1.18 Total: -88.50 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.88 Total: -8.87 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.78 Total: -3.26 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -66.27 3.59 -62.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446187.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.421 kcal (2) G-P(sol) polarization free energy of solvation -66.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds