Wall clock time and date at job start Mon Mar 30 2020 07:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47164 * 2 1 4 4 C 1.38301 * 119.94217 * 270.02667 * 3 2 1 5 5 C 1.38286 * 120.03333 * 180.02562 * 4 3 2 6 6 F 1.35097 * 120.04931 * 179.97438 * 5 4 3 7 7 C 1.38954 * 119.90299 * 359.65551 * 5 4 3 8 8 O 1.35952 * 120.06239 * 180.31832 * 7 5 4 9 9 C 1.38625 * 119.87294 * 0.61204 * 7 5 4 10 10 C 1.50698 * 120.01227 * 179.70202 * 9 7 5 11 11 H 1.09001 * 109.47556 * 324.72929 * 10 9 7 12 12 N 1.46905 * 109.46910 * 204.72968 * 10 9 7 13 13 C 1.52998 * 109.47049 * 84.73250 * 10 9 7 14 14 C 1.50698 * 109.47017 * 184.99831 * 13 10 9 15 15 H 1.08005 * 120.00198 * 359.97438 * 14 13 10 16 16 C 1.37882 * 120.00008 * 180.02562 * 14 13 10 17 17 N 1.31521 * 119.99866 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99970 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47606 * 60.00021 * 18 16 14 20 20 H 1.48510 * 109.47071 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47198 * 299.99846 * 18 16 14 22 22 C 1.38221 * 119.93395 * 89.99852 * 3 2 1 23 23 H 1.09003 * 109.47329 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47146 * 299.99694 * 1 2 3 25 25 H 1.09007 * 109.47193 * 59.99494 * 1 2 3 26 26 H 1.09001 * 109.47146 * 240.00306 * 2 1 3 27 27 H 1.08993 * 109.47004 * 120.00333 * 2 1 3 28 28 H 1.08007 * 119.97932 * 359.97438 * 4 3 2 29 29 H 0.96698 * 114.00405 * 270.29391 * 8 7 5 30 30 H 1.00901 * 110.99869 * 300.00472 * 12 10 9 31 31 H 1.00896 * 110.99543 * 63.95595 * 12 10 9 32 32 H 1.09001 * 109.47115 * 304.99584 * 13 10 9 33 33 H 1.09003 * 109.47470 * 64.99668 * 13 10 9 34 34 H 0.96995 * 119.99589 * 179.97438 * 17 16 14 35 35 H 1.07999 * 119.95329 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0718 -1.1984 5 6 2.7234 3.3754 -1.2006 6 9 2.9482 4.0115 -2.3711 7 6 2.9491 4.0324 0.0028 8 8 3.3966 5.3161 0.0044 9 6 2.7230 3.3743 1.2017 10 6 2.9732 4.0815 2.5087 11 1 3.8324 4.7442 2.4046 12 7 3.2440 3.0898 3.5581 13 6 1.7392 4.9022 2.8888 14 6 2.0327 5.7051 4.1299 15 1 3.0023 5.6365 4.6007 16 6 1.0631 6.5265 4.6650 17 7 -0.1177 6.6097 4.0919 18 14 1.4267 7.5211 6.2037 19 1 2.5679 8.4352 5.9443 20 1 0.2290 8.3179 6.5727 21 1 1.7724 6.6016 7.3174 22 6 2.2622 2.0711 1.1978 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.0814 1.5615 -2.1330 29 1 4.3602 5.3968 0.0026 30 1 2.4617 2.4631 3.6739 31 1 4.0913 2.5782 3.3621 32 1 1.4856 5.5770 2.0712 33 1 0.9014 4.2316 3.0796 34 1 -0.7999 7.1872 4.4686 35 1 2.0820 1.5601 2.1321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260456738.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:20 Heat of formation + Delta-G solvation = -80.071337 kcal Electronic energy + Delta-G solvation = -18646.621883 eV Core-core repulsion = 15558.523364 eV Total energy + Delta-G solvation = -3088.098519 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 3.13 seconds Orbital eigenvalues (eV) -48.72638 -39.85507 -37.00461 -35.62853 -33.14094 -32.38062 -29.68159 -28.79689 -28.07417 -24.65222 -23.82722 -22.35210 -21.15854 -19.57010 -18.36877 -16.87605 -16.57392 -16.14634 -15.80262 -15.16264 -15.02316 -14.36022 -14.31334 -14.09005 -13.77324 -13.65567 -13.04693 -12.69079 -12.36409 -12.21460 -11.98907 -11.47114 -11.20984 -11.08901 -11.05412 -10.74651 -10.55729 -10.36672 -10.23100 -9.62366 -9.07138 -8.44610 -8.29317 -8.23507 -8.04774 -5.87543 -3.86548 1.20009 1.30681 3.42362 3.45753 3.48909 3.56862 4.14262 4.47498 4.56639 4.67699 4.81441 5.12269 5.17929 5.26932 5.32410 5.39085 5.45865 5.51574 5.77257 5.82314 5.93610 6.03988 6.08368 6.16145 6.20923 6.45283 6.56671 6.83269 6.90797 7.57915 7.70639 7.85222 7.97361 8.08406 8.13959 8.54560 9.18667 9.74773 11.24282 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023052 B = 0.005971 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.346449 B = 4688.020722 C = 5250.352639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.062 4.062 4 C -0.156 4.156 5 C 0.074 3.926 6 F -0.138 7.138 7 C 0.075 3.925 8 O -0.474 6.474 9 C -0.091 4.091 10 C 0.138 3.862 11 H 0.083 0.917 12 N -0.821 5.821 13 C 0.042 3.958 14 C -0.494 4.494 15 H 0.061 0.939 16 C 0.051 3.949 17 N -0.902 5.902 18 Si 0.894 3.106 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.278 1.278 22 C -0.121 4.121 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.132 0.868 29 H 0.384 0.616 30 H 0.335 0.665 31 H 0.322 0.678 32 H 0.026 0.974 33 H 0.014 0.986 34 H 0.258 0.742 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.830 -12.910 -9.646 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.062 4.062 4 C -0.175 4.175 5 C 0.054 3.946 6 F -0.117 7.117 7 C 0.029 3.971 8 O -0.283 6.283 9 C -0.094 4.094 10 C 0.026 3.974 11 H 0.101 0.899 12 N -0.348 5.348 13 C 0.004 3.996 14 C -0.532 4.532 15 H 0.079 0.921 16 C -0.149 4.149 17 N -0.542 5.542 18 Si 0.722 3.278 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.203 1.203 22 C -0.139 4.139 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.150 0.850 29 H 0.239 0.761 30 H 0.149 0.851 31 H 0.133 0.867 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.112 -12.013 -9.147 15.941 hybrid contribution 0.453 -0.022 -0.292 0.539 sum 5.565 -12.035 -9.438 16.276 Atomic orbital electron populations 1.21772 0.94421 1.01676 1.02787 1.20519 0.96453 0.92021 1.02843 1.19655 0.98067 0.96391 0.92084 1.20768 1.04361 0.93205 0.99150 1.18134 1.04018 0.91532 0.80868 1.91462 1.92526 1.81988 1.45711 1.18264 1.03199 0.85283 0.90397 1.84999 1.26530 1.20706 1.96065 1.21715 0.96248 0.93886 0.97550 1.20744 1.02290 0.92426 0.81912 0.89936 1.58844 1.06905 1.21056 1.48043 1.19099 0.89649 0.93824 0.96995 1.21087 0.99126 1.23319 1.09716 0.92055 1.25021 0.95230 0.97260 0.97393 1.69970 1.04222 1.39557 1.40465 0.86637 0.77342 0.80097 0.83714 1.20442 1.21621 1.20350 1.20829 1.00862 0.94370 0.97864 0.92370 0.92013 0.92511 0.91064 0.90733 0.85012 0.76071 0.85096 0.86686 0.95581 0.96781 0.93199 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.89 37.16 0.37 -1.10 16 2 C -0.08 -0.79 6.06 -27.88 -0.17 -0.96 16 3 C -0.06 -0.80 5.13 -104.60 -0.54 -1.34 16 4 C -0.16 -2.12 9.67 -39.54 -0.38 -2.50 16 5 C 0.07 1.19 7.31 -39.30 -0.29 0.90 16 6 F -0.14 -2.24 17.11 2.25 0.04 -2.20 16 7 C 0.08 1.30 6.68 -39.17 -0.26 1.04 16 8 O -0.47 -8.26 12.51 -19.59 -0.25 -8.51 16 9 C -0.09 -1.58 5.06 -104.49 -0.53 -2.10 16 10 C 0.14 2.74 2.65 -68.86 -0.18 2.56 16 11 H 0.08 1.67 7.70 -51.93 -0.40 1.27 16 12 N -0.82 -14.44 8.54 -5.65 -0.05 -14.49 16 13 C 0.04 1.08 4.60 -27.89 -0.13 0.95 16 14 C -0.49 -14.05 8.84 -34.44 -0.30 -14.35 16 15 H 0.06 1.72 7.74 -52.48 -0.41 1.32 16 16 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 17 N -0.90 -27.74 13.29 55.43 0.74 -27.00 16 18 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C -0.12 -1.78 8.92 -39.59 -0.35 -2.13 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 27 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 28 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.38 4.64 9.06 45.56 0.41 5.05 16 30 H 0.33 5.59 7.21 -39.29 -0.28 5.31 16 31 H 0.32 4.62 9.06 -39.29 -0.36 4.27 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.13 1.71 6.29 -52.49 -0.33 1.38 16 LS Contribution 302.90 15.07 4.56 4.56 Total: -1.00 -32.93 302.90 -6.71 -39.64 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -3.87 Total: 8.38 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -2.86 Total: -17.66 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.69 Total: -41.49 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.25 Total: -8.51 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.93 -6.71 -39.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260456738.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.434 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.13 seconds