Wall clock time and date at job start Mon Mar 30 2020 07:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47164 * 2 1 4 4 C 1.38301 * 119.94217 * 270.02667 * 3 2 1 5 5 C 1.38286 * 120.03333 * 180.02562 * 4 3 2 6 6 F 1.35097 * 120.04931 * 179.97438 * 5 4 3 7 7 C 1.38954 * 119.90299 * 359.65551 * 5 4 3 8 8 O 1.35952 * 120.06239 * 180.31832 * 7 5 4 9 9 C 1.38625 * 119.87294 * 0.61204 * 7 5 4 10 10 C 1.50698 * 120.01227 * 179.70202 * 9 7 5 11 11 H 1.09001 * 109.47556 * 324.72929 * 10 9 7 12 12 N 1.46905 * 109.46910 * 204.72968 * 10 9 7 13 13 C 1.52998 * 109.47049 * 84.73250 * 10 9 7 14 14 C 1.50698 * 109.47017 * 184.99831 * 13 10 9 15 15 H 1.08005 * 120.00198 * 359.97438 * 14 13 10 16 16 C 1.37882 * 120.00008 * 180.02562 * 14 13 10 17 17 N 1.31521 * 119.99866 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99970 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47606 * 60.00021 * 18 16 14 20 20 H 1.48510 * 109.47071 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47198 * 299.99846 * 18 16 14 22 22 C 1.38221 * 119.93395 * 89.99852 * 3 2 1 23 23 H 1.09003 * 109.47329 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47146 * 299.99694 * 1 2 3 25 25 H 1.09007 * 109.47193 * 59.99494 * 1 2 3 26 26 H 1.09001 * 109.47146 * 240.00306 * 2 1 3 27 27 H 1.08993 * 109.47004 * 120.00333 * 2 1 3 28 28 H 1.08007 * 119.97932 * 359.97438 * 4 3 2 29 29 H 0.96698 * 114.00405 * 270.29391 * 8 7 5 30 30 H 1.00901 * 110.99869 * 300.00472 * 12 10 9 31 31 H 1.00896 * 110.99543 * 63.95595 * 12 10 9 32 32 H 1.09001 * 109.47115 * 304.99584 * 13 10 9 33 33 H 1.09003 * 109.47470 * 64.99668 * 13 10 9 34 34 H 0.96995 * 119.99589 * 179.97438 * 17 16 14 35 35 H 1.07999 * 119.95329 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0718 -1.1984 5 6 2.7234 3.3754 -1.2006 6 9 2.9482 4.0115 -2.3711 7 6 2.9491 4.0324 0.0028 8 8 3.3966 5.3161 0.0044 9 6 2.7230 3.3743 1.2017 10 6 2.9732 4.0815 2.5087 11 1 3.8324 4.7442 2.4046 12 7 3.2440 3.0898 3.5581 13 6 1.7392 4.9022 2.8888 14 6 2.0327 5.7051 4.1299 15 1 3.0023 5.6365 4.6007 16 6 1.0631 6.5265 4.6650 17 7 -0.1177 6.6097 4.0919 18 14 1.4267 7.5211 6.2037 19 1 2.5679 8.4352 5.9443 20 1 0.2290 8.3179 6.5727 21 1 1.7724 6.6016 7.3174 22 6 2.2622 2.0711 1.1978 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.0814 1.5615 -2.1330 29 1 4.3602 5.3968 0.0026 30 1 2.4617 2.4631 3.6739 31 1 4.0913 2.5782 3.3621 32 1 1.4856 5.5770 2.0712 33 1 0.9014 4.2316 3.0796 34 1 -0.7999 7.1872 4.4686 35 1 2.0820 1.5601 2.1321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260456738.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:19 Heat of formation + Delta-G solvation = -103.793074 kcal Electronic energy + Delta-G solvation = -18647.650535 eV Core-core repulsion = 15558.523364 eV Total energy + Delta-G solvation = -3089.127171 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.96478 -41.10019 -38.21203 -37.17401 -34.67808 -33.97047 -30.96062 -30.40283 -29.51101 -26.42149 -24.79378 -24.01896 -22.36695 -21.02030 -19.66526 -18.48845 -18.00825 -17.69072 -17.05687 -16.75932 -16.29468 -16.24250 -15.58877 -15.13234 -15.01135 -14.84941 -14.24299 -14.14620 -14.00312 -13.37750 -13.30627 -13.17772 -12.81433 -12.63052 -12.38174 -12.24269 -11.93712 -11.80039 -11.69095 -11.46002 -11.21637 -10.51322 -9.75912 -9.48554 -9.46510 -8.11657 -6.18687 0.01940 0.09958 1.42307 1.45978 1.53467 2.37820 2.48194 2.96700 3.21432 3.28878 3.61844 3.69600 3.87840 4.13211 4.23109 4.32465 4.47075 4.50496 4.55799 4.78300 4.87323 4.95205 4.99400 5.05680 5.10762 5.27226 5.40740 5.46338 5.51491 5.67642 5.77208 5.86191 6.27912 6.45988 6.72201 6.81043 6.95420 7.47844 9.00378 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023052 B = 0.005971 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.346449 B = 4688.020722 C = 5250.352639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 C -0.055 4.055 4 C -0.143 4.143 5 C 0.058 3.942 6 F -0.143 7.143 7 C 0.057 3.943 8 O -0.499 6.499 9 C -0.113 4.113 10 C 0.155 3.845 11 H 0.074 0.926 12 N -0.826 5.826 13 C 0.052 3.948 14 C -0.506 4.506 15 H 0.063 0.937 16 C -0.008 4.008 17 N -0.941 5.941 18 Si 0.964 3.036 19 H -0.270 1.270 20 H -0.288 1.288 21 H -0.267 1.267 22 C -0.119 4.119 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.162 0.838 29 H 0.402 0.598 30 H 0.341 0.659 31 H 0.344 0.656 32 H -0.015 1.015 33 H -0.012 1.012 34 H 0.259 0.741 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.556 -14.835 -9.579 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.055 4.055 4 C -0.162 4.162 5 C 0.038 3.962 6 F -0.122 7.122 7 C 0.011 3.989 8 O -0.310 6.310 9 C -0.116 4.116 10 C 0.043 3.957 11 H 0.092 0.908 12 N -0.356 5.356 13 C 0.015 3.985 14 C -0.544 4.544 15 H 0.081 0.919 16 C -0.204 4.204 17 N -0.583 5.583 18 Si 0.789 3.211 19 H -0.195 1.195 20 H -0.213 1.213 21 H -0.192 1.192 22 C -0.137 4.137 23 H 0.099 0.901 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.180 0.820 29 H 0.260 0.740 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.003 0.997 33 H 0.006 0.994 34 H 0.068 0.932 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.876 -13.957 -9.084 17.659 hybrid contribution 0.221 0.520 -0.377 0.680 sum 6.097 -13.437 -9.461 17.528 Atomic orbital electron populations 1.21785 0.94477 1.02833 1.01662 1.20620 0.96170 0.89794 1.04895 1.20039 0.96511 0.97933 0.91003 1.21158 1.02212 0.92078 1.00748 1.18302 1.05092 0.92518 0.80256 1.91445 1.92702 1.82299 1.45717 1.18487 1.04012 0.85219 0.91205 1.84930 1.28448 1.21475 1.96184 1.21450 0.98879 0.95139 0.96152 1.20143 0.98920 0.92649 0.83961 0.90770 1.58687 1.08250 1.21286 1.47386 1.18840 0.91626 0.93214 0.94842 1.21463 0.99081 1.23495 1.10400 0.91861 1.25961 0.94996 0.98571 1.00886 1.70120 1.05320 1.40569 1.42283 0.85515 0.77343 0.78580 0.79620 1.19481 1.21326 1.19196 1.21054 0.99860 0.93403 0.99424 0.90126 0.93856 0.92972 0.88589 0.89201 0.82000 0.73993 0.84473 0.84216 0.99715 0.99406 0.93207 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.89 71.98 0.71 -1.83 16 2 C -0.08 -1.23 6.06 29.85 0.18 -1.05 16 3 C -0.05 -1.28 5.13 -19.85 -0.10 -1.38 16 4 C -0.14 -3.56 9.67 22.30 0.22 -3.34 16 5 C 0.06 1.82 7.31 22.45 0.16 1.98 16 6 F -0.14 -4.57 17.11 44.97 0.77 -3.80 16 7 C 0.06 2.01 6.68 22.53 0.15 2.16 16 8 O -0.50 -18.10 12.51 -93.01 -1.16 -19.27 16 9 C -0.11 -3.95 5.06 -19.78 -0.10 -4.05 16 10 C 0.16 6.30 2.65 44.17 0.12 6.42 16 11 H 0.07 3.08 7.70 -2.39 -0.02 3.06 16 12 N -0.83 -28.55 8.54 -171.80 -1.47 -30.02 16 13 C 0.05 2.81 4.60 29.85 0.14 2.95 16 14 C -0.51 -29.37 8.84 25.60 0.23 -29.14 16 15 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 16 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 17 N -0.94 -59.45 13.29 21.45 0.28 -59.17 16 18 Si 0.96 46.06 29.54 68.60 2.03 48.08 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 C -0.12 -3.36 8.92 22.26 0.20 -3.17 16 23 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 25 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.10 1.12 8.08 -2.39 -0.02 1.10 16 27 H 0.09 1.21 8.08 -2.39 -0.02 1.19 16 28 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.40 10.20 9.06 -74.06 -0.67 9.53 16 30 H 0.34 11.12 7.21 -89.69 -0.65 10.47 16 31 H 0.34 9.37 9.06 -89.70 -0.81 8.55 16 32 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 33 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 34 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 35 H 0.14 3.54 6.29 -2.91 -0.02 3.52 16 Total: -1.00 -72.71 302.90 1.81 -70.90 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -1.00 Total: 23.74 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 2.36 Total: -30.47 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -1.18 Total: -89.18 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -1.16 Total: -19.27 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.77 Total: -3.80 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -72.71 1.81 -70.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260456738.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.892 kcal (2) G-P(sol) polarization free energy of solvation -72.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds