Wall clock time and date at job start Mon Mar 30 2020 07:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35886 * 116.99802 * 2 1 4 4 C 1.38718 * 120.04459 * 269.97423 * 3 2 1 5 5 C 1.50703 * 120.03793 * 0.04899 * 4 3 2 6 6 C 1.38345 * 119.92216 * 180.02562 * 4 3 2 7 7 F 1.35100 * 119.99644 * 179.97438 * 6 4 3 8 8 C 1.38515 * 120.00558 * 359.97438 * 6 4 3 9 9 C 1.38211 * 120.08339 * 359.75006 * 8 6 4 10 10 C 1.50705 * 119.95830 * 180.27667 * 9 8 6 11 11 H 1.09000 * 109.47137 * 145.23145 * 10 9 8 12 12 N 1.46899 * 109.47336 * 25.22974 * 10 9 8 13 13 C 1.50695 * 109.46833 * 265.22553 * 10 9 8 14 14 H 1.08004 * 120.00415 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99964 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00153 * 180.02562 * 15 13 10 17 17 Si 1.86797 * 120.00027 * 0.02562 * 15 13 10 18 18 H 1.48508 * 109.47116 * 89.99550 * 17 15 13 19 19 H 1.48495 * 109.47202 * 209.99507 * 17 15 13 20 20 H 1.48498 * 109.46894 * 330.00033 * 17 15 13 21 21 C 1.38171 * 120.08136 * 0.50364 * 9 8 6 22 22 C 1.50706 * 120.00600 * 179.77101 * 21 9 8 23 23 H 1.08995 * 109.47130 * 299.99757 * 1 2 3 24 24 H 1.09005 * 109.47040 * 60.00237 * 1 2 3 25 25 H 1.09002 * 109.47229 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46774 * 89.99507 * 5 4 3 27 27 H 1.08998 * 109.46861 * 209.99943 * 5 4 3 28 28 H 1.09001 * 109.46811 * 330.00055 * 5 4 3 29 29 H 1.07997 * 119.95902 * 180.02562 * 8 6 4 30 30 H 1.00899 * 110.99957 * 300.00254 * 12 10 9 31 31 H 1.00897 * 110.99839 * 63.95032 * 12 10 9 32 32 H 0.96995 * 120.00233 * 180.02562 * 16 15 13 33 33 H 1.08999 * 109.47015 * 269.72809 * 22 21 9 34 34 H 1.09000 * 109.46646 * 29.71961 * 22 21 9 35 35 H 1.09000 * 109.47248 * 149.72679 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 2.3617 1.8294 -1.2008 5 6 2.0200 1.1599 -2.5070 6 6 2.9902 3.0618 -1.1978 7 9 3.2989 3.6654 -2.3664 8 6 3.3030 3.6770 0.0031 9 6 2.9834 3.0635 1.1997 10 6 3.3194 3.7382 2.5047 11 1 2.5444 3.5165 3.2384 12 7 3.3980 5.1906 2.2991 13 6 4.6462 3.2292 3.0062 14 1 5.1918 2.4913 2.4367 15 6 5.1642 3.7063 4.1916 16 7 6.3223 3.2625 4.6291 17 14 4.2210 4.9831 5.1762 18 1 3.3158 4.2994 6.1347 19 1 5.1780 5.8383 5.9231 20 1 3.4191 5.8264 4.2536 21 6 2.3604 1.8302 1.2009 22 6 2.0173 1.1604 2.5066 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.0223 1.4656 -2.8218 27 1 2.7460 1.4520 -3.2657 28 1 2.0446 0.0778 -2.3780 29 1 3.7933 4.6392 0.0046 30 1 4.1099 5.4220 1.6225 31 1 2.5026 5.5659 2.0244 32 1 6.6866 3.5979 5.4631 33 1 2.8499 0.5318 2.8223 34 1 1.8272 1.9196 3.2653 35 1 1.1267 0.5455 2.3766 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260462306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:41 Heat of formation + Delta-G solvation = -55.854362 kcal Electronic energy + Delta-G solvation = -19151.300346 eV Core-core repulsion = 16064.251954 eV Total energy + Delta-G solvation = -3087.048393 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -48.61578 -40.03174 -37.49990 -34.82356 -32.60537 -31.83031 -30.58182 -27.97589 -26.82930 -25.74161 -25.61145 -22.49546 -21.11999 -19.81567 -17.38214 -17.11716 -16.84118 -15.85150 -15.52875 -15.05369 -14.73515 -14.72048 -14.35110 -14.05958 -13.45392 -13.26777 -13.14997 -12.68372 -12.55771 -12.20164 -12.00259 -11.86824 -11.57144 -11.17319 -11.08125 -10.86961 -10.70391 -10.29668 -10.05973 -9.74670 -9.32200 -8.57642 -8.19544 -7.90870 -7.31619 -6.03878 -4.15053 1.39052 1.53452 3.47050 3.57876 3.58754 3.88853 4.01921 4.65660 4.66880 4.96162 5.06762 5.23445 5.24952 5.27262 5.34378 5.48639 5.58030 5.65522 5.69457 5.80036 5.82601 6.00235 6.07183 6.23622 6.38116 6.43760 6.54186 6.70154 6.78017 6.99349 7.09626 7.53324 7.68492 8.09040 8.26443 8.62257 8.96337 9.58958 11.05575 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025264 B = 0.007343 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.040219 B = 3812.074480 C = 4408.772638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.329 6.329 3 C 0.113 3.887 4 C -0.159 4.159 5 C -0.103 4.103 6 C 0.099 3.901 7 F -0.144 7.144 8 C -0.157 4.157 9 C -0.034 4.034 10 C 0.219 3.781 11 H 0.056 0.944 12 N -0.836 5.836 13 C -0.518 4.518 14 H 0.070 0.930 15 C 0.087 3.913 16 N -0.896 5.896 17 Si 0.864 3.136 18 H -0.296 1.296 19 H -0.303 1.303 20 H -0.192 1.192 21 C -0.098 4.098 22 C -0.103 4.103 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.133 0.867 30 H 0.331 0.669 31 H 0.309 0.691 32 H 0.264 0.736 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.480 -2.532 -9.957 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.246 6.246 3 C 0.069 3.931 4 C -0.160 4.160 5 C -0.159 4.159 6 C 0.080 3.920 7 F -0.122 7.122 8 C -0.176 4.176 9 C -0.036 4.036 10 C 0.110 3.890 11 H 0.073 0.927 12 N -0.365 5.365 13 C -0.556 4.556 14 H 0.088 0.912 15 C -0.117 4.117 16 N -0.533 5.533 17 Si 0.690 3.310 18 H -0.224 1.224 19 H -0.231 1.231 20 H -0.113 1.113 21 C -0.099 4.099 22 C -0.160 4.160 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.120 0.880 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.058 -2.619 -9.106 15.335 hybrid contribution -0.418 0.550 -0.656 0.952 sum -12.476 -2.069 -9.762 15.976 Atomic orbital electron populations 1.22954 0.79547 1.02839 1.00625 1.85994 1.19400 1.24929 1.94283 1.18006 0.98137 0.86117 0.90838 1.19892 1.05072 0.94738 0.96327 1.20518 1.01267 1.00893 0.93268 1.17232 1.01452 0.92174 0.81166 1.91433 1.91324 1.82933 1.46535 1.20968 1.03776 1.02284 0.90581 1.20925 0.91811 0.93521 0.97358 1.18697 0.98830 0.83574 0.87915 0.92694 1.60066 1.09017 1.14272 1.53188 1.20611 1.02636 1.25213 1.07185 0.91166 1.24964 0.94385 0.95497 0.96894 1.69948 1.18446 1.43251 1.21638 0.87245 0.81013 0.83506 0.79199 1.22387 1.23062 1.11348 1.20094 1.00297 0.94534 0.94978 1.20666 1.01280 1.00388 0.93617 0.93401 0.93852 0.89037 0.91852 0.91571 0.90801 0.84929 0.85419 0.87953 0.92694 0.90150 0.90747 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.76 101.05 1.09 1.47 16 2 O -0.33 -5.01 8.68 -19.38 -0.17 -5.18 16 3 C 0.11 1.92 5.67 -39.22 -0.22 1.70 16 4 C -0.16 -2.61 5.90 -104.40 -0.62 -3.23 16 5 C -0.10 -1.35 9.61 36.01 0.35 -1.01 16 6 C 0.10 1.72 7.24 -39.44 -0.29 1.44 16 7 F -0.14 -2.40 16.48 2.25 0.04 -2.36 16 8 C -0.16 -2.87 9.25 -39.49 -0.37 -3.24 16 9 C -0.03 -0.66 4.98 -104.65 -0.52 -1.18 16 10 C 0.22 4.74 1.84 -70.02 -0.13 4.61 16 11 H 0.06 1.20 5.58 -51.93 -0.29 0.91 16 12 N -0.84 -16.38 5.43 -6.65 -0.04 -16.41 16 13 C -0.52 -13.91 9.29 -34.44 -0.32 -14.23 16 14 H 0.07 2.12 7.98 -52.48 -0.42 1.70 16 15 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 16 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 17 Si 0.86 20.90 26.94 -169.99 -4.58 16.33 16 18 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 20 H -0.19 -4.26 5.17 56.52 0.29 -3.97 16 21 C -0.10 -1.81 5.89 -104.46 -0.62 -2.43 16 22 C -0.10 -1.78 9.39 36.01 0.34 -1.45 16 23 H 0.05 0.51 7.25 -51.93 -0.38 0.13 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.84 7.64 -51.93 -0.40 0.45 16 28 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 29 H 0.13 2.28 6.28 -52.49 -0.33 1.95 16 30 H 0.33 6.33 7.20 -39.29 -0.28 6.05 16 31 H 0.31 5.18 9.06 -39.29 -0.36 4.82 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.07 1.30 6.01 -51.93 -0.31 0.99 16 35 H 0.05 0.79 6.31 -51.93 -0.33 0.46 16 LS Contribution 287.88 15.07 4.34 4.34 Total: -1.00 -30.52 287.88 -5.45 -35.97 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.42 Total: 8.91 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -1.40 Total: -15.19 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.74 Total: -42.82 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.17 Total: -5.18 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.58 Total: 16.33 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.52 -5.45 -35.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.884 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds