Wall clock time and date at job start Mon Mar 30 2020 07:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35886 * 116.99802 * 2 1 4 4 C 1.38718 * 120.04459 * 269.97423 * 3 2 1 5 5 C 1.50703 * 120.03793 * 0.04899 * 4 3 2 6 6 C 1.38345 * 119.92216 * 180.02562 * 4 3 2 7 7 F 1.35100 * 119.99644 * 179.97438 * 6 4 3 8 8 C 1.38515 * 120.00558 * 359.97438 * 6 4 3 9 9 C 1.38211 * 120.08339 * 359.75006 * 8 6 4 10 10 C 1.50705 * 119.95830 * 180.27667 * 9 8 6 11 11 H 1.09000 * 109.47137 * 145.23145 * 10 9 8 12 12 N 1.46899 * 109.47336 * 25.22974 * 10 9 8 13 13 C 1.50695 * 109.46833 * 265.22553 * 10 9 8 14 14 H 1.08004 * 120.00415 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99964 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00153 * 180.02562 * 15 13 10 17 17 Si 1.86797 * 120.00027 * 0.02562 * 15 13 10 18 18 H 1.48508 * 109.47116 * 89.99550 * 17 15 13 19 19 H 1.48495 * 109.47202 * 209.99507 * 17 15 13 20 20 H 1.48498 * 109.46894 * 330.00033 * 17 15 13 21 21 C 1.38171 * 120.08136 * 0.50364 * 9 8 6 22 22 C 1.50706 * 120.00600 * 179.77101 * 21 9 8 23 23 H 1.08995 * 109.47130 * 299.99757 * 1 2 3 24 24 H 1.09005 * 109.47040 * 60.00237 * 1 2 3 25 25 H 1.09002 * 109.47229 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46774 * 89.99507 * 5 4 3 27 27 H 1.08998 * 109.46861 * 209.99943 * 5 4 3 28 28 H 1.09001 * 109.46811 * 330.00055 * 5 4 3 29 29 H 1.07997 * 119.95902 * 180.02562 * 8 6 4 30 30 H 1.00899 * 110.99957 * 300.00254 * 12 10 9 31 31 H 1.00897 * 110.99839 * 63.95032 * 12 10 9 32 32 H 0.96995 * 120.00233 * 180.02562 * 16 15 13 33 33 H 1.08999 * 109.47015 * 269.72809 * 22 21 9 34 34 H 1.09000 * 109.46646 * 29.71961 * 22 21 9 35 35 H 1.09000 * 109.47248 * 149.72679 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 2.3617 1.8294 -1.2008 5 6 2.0200 1.1599 -2.5070 6 6 2.9902 3.0618 -1.1978 7 9 3.2989 3.6654 -2.3664 8 6 3.3030 3.6770 0.0031 9 6 2.9834 3.0635 1.1997 10 6 3.3194 3.7382 2.5047 11 1 2.5444 3.5165 3.2384 12 7 3.3980 5.1906 2.2991 13 6 4.6462 3.2292 3.0062 14 1 5.1918 2.4913 2.4367 15 6 5.1642 3.7063 4.1916 16 7 6.3223 3.2625 4.6291 17 14 4.2210 4.9831 5.1762 18 1 3.3158 4.2994 6.1347 19 1 5.1780 5.8383 5.9231 20 1 3.4191 5.8264 4.2536 21 6 2.3604 1.8302 1.2009 22 6 2.0173 1.1604 2.5066 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.0223 1.4656 -2.8218 27 1 2.7460 1.4520 -3.2657 28 1 2.0446 0.0778 -2.3780 29 1 3.7933 4.6392 0.0046 30 1 4.1099 5.4220 1.6225 31 1 2.5026 5.5659 2.0244 32 1 6.6866 3.5979 5.4631 33 1 2.8499 0.5318 2.8223 34 1 1.8272 1.9196 3.2653 35 1 1.1267 0.5455 2.3766 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260462306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:41 Heat of formation + Delta-G solvation = -76.194187 kcal Electronic energy + Delta-G solvation = -19152.182347 eV Core-core repulsion = 16064.251954 eV Total energy + Delta-G solvation = -3087.930394 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.94913 -41.33712 -38.82888 -36.34671 -34.26599 -33.59436 -31.94696 -29.13539 -28.42583 -27.22429 -26.90595 -24.06142 -22.54054 -21.26417 -19.02325 -18.70484 -18.31012 -17.08845 -16.91007 -16.51491 -16.21956 -16.07405 -15.82937 -15.53600 -15.01015 -14.75261 -14.27250 -14.15612 -13.97110 -13.71973 -13.24146 -12.96738 -12.95429 -12.80639 -12.58984 -12.58527 -12.11823 -11.95382 -11.71800 -11.35342 -10.98808 -10.70096 -9.55191 -9.32965 -8.95957 -8.21345 -6.35206 0.04830 0.15089 1.53250 1.61320 1.96747 2.31151 2.62765 2.72140 3.16204 3.34159 3.72228 3.79186 3.91536 4.15148 4.21714 4.40102 4.43009 4.49898 4.59850 4.66574 4.69049 4.76938 4.79390 4.87896 4.96188 5.09715 5.17586 5.26935 5.34121 5.47042 5.63886 5.76817 6.14797 6.48010 6.49318 6.78220 7.01560 7.42273 8.92001 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025264 B = 0.007343 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.040219 B = 3812.074480 C = 4408.772638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.341 6.341 3 C 0.117 3.883 4 C -0.157 4.157 5 C -0.101 4.101 6 C 0.093 3.907 7 F -0.139 7.139 8 C -0.163 4.163 9 C -0.056 4.056 10 C 0.230 3.770 11 H 0.059 0.941 12 N -0.837 5.837 13 C -0.509 4.509 14 H 0.020 0.980 15 C 0.028 3.972 16 N -0.951 5.951 17 Si 0.926 3.074 18 H -0.298 1.298 19 H -0.318 1.318 20 H -0.154 1.154 21 C -0.115 4.115 22 C -0.099 4.099 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.119 0.881 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.336 0.664 31 H 0.333 0.667 32 H 0.262 0.738 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.150 -2.137 -11.353 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.258 6.258 3 C 0.073 3.927 4 C -0.158 4.158 5 C -0.157 4.157 6 C 0.074 3.926 7 F -0.118 7.118 8 C -0.182 4.182 9 C -0.058 4.058 10 C 0.120 3.880 11 H 0.077 0.923 12 N -0.369 5.369 13 C -0.547 4.547 14 H 0.039 0.961 15 C -0.171 4.171 16 N -0.591 5.591 17 Si 0.752 3.248 18 H -0.225 1.225 19 H -0.246 1.246 20 H -0.074 1.074 21 C -0.116 4.116 22 C -0.155 4.155 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.137 0.863 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.157 0.843 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.763 -2.224 -10.535 18.273 hybrid contribution 0.378 0.284 -0.363 0.597 sum -14.385 -1.940 -10.898 18.151 Atomic orbital electron populations 1.23270 0.76946 1.05013 1.01461 1.85967 1.21800 1.23760 1.94304 1.18024 0.97848 0.86390 0.90433 1.20264 1.03634 0.94252 0.97670 1.20600 1.02641 1.00981 0.91471 1.17272 1.01676 0.92661 0.81016 1.91442 1.91305 1.82929 1.46113 1.21029 1.03836 1.02707 0.90661 1.20710 0.93844 0.94505 0.96781 1.18321 0.95743 0.84791 0.89153 0.92346 1.59734 1.10640 1.12753 1.53740 1.20784 1.04227 1.23457 1.06267 0.96146 1.25885 0.95117 0.97792 0.98281 1.70106 1.20839 1.45665 1.22477 0.86355 0.79571 0.81127 0.77794 1.22532 1.24641 1.07388 1.20288 1.00700 0.94532 0.96075 1.20618 1.01555 1.00203 0.93158 0.93088 0.92512 0.86277 0.89514 0.91154 0.90135 0.84325 0.84969 0.85357 0.92958 0.92435 0.91251 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.76 113.37 1.22 1.71 16 2 O -0.34 -9.52 8.68 -92.27 -0.80 -10.32 16 3 C 0.12 3.78 5.67 22.50 0.13 3.91 16 4 C -0.16 -4.81 5.90 -19.72 -0.12 -4.93 16 5 C -0.10 -2.33 9.61 71.24 0.68 -1.64 16 6 C 0.09 3.08 7.24 22.36 0.16 3.24 16 7 F -0.14 -4.37 16.48 44.97 0.74 -3.63 16 8 C -0.16 -5.81 9.25 22.33 0.21 -5.61 16 9 C -0.06 -2.16 4.98 -19.89 -0.10 -2.26 16 10 C 0.23 9.81 1.84 43.42 0.08 9.89 16 11 H 0.06 2.48 5.58 -2.39 -0.01 2.46 16 12 N -0.84 -31.07 5.43 -174.95 -0.95 -32.02 16 13 C -0.51 -28.05 9.29 25.60 0.24 -27.81 16 14 H 0.02 1.29 7.98 -2.91 -0.02 1.27 16 15 C 0.03 1.60 5.47 84.66 0.46 2.06 16 16 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 17 Si 0.93 43.34 26.94 68.60 1.85 45.19 16 18 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 19 H -0.32 -15.59 7.11 99.48 0.71 -14.88 16 20 H -0.15 -6.22 5.17 99.48 0.51 -5.71 16 21 C -0.11 -4.16 5.89 -19.76 -0.12 -4.28 16 22 C -0.10 -3.38 9.39 71.24 0.67 -2.71 16 23 H 0.05 0.92 7.25 -2.39 -0.02 0.90 16 24 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.07 1.58 7.64 -2.39 -0.02 1.57 16 28 H 0.08 1.78 7.53 -2.39 -0.02 1.76 16 29 H 0.14 4.62 6.28 -2.91 -0.02 4.60 16 30 H 0.34 12.28 7.20 -89.69 -0.65 11.64 16 31 H 0.33 10.11 9.06 -89.70 -0.81 9.30 16 32 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.07 2.39 6.01 -2.39 -0.01 2.38 16 35 H 0.08 2.25 6.31 -2.39 -0.02 2.24 16 Total: -1.00 -67.62 287.88 4.14 -63.49 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -0.52 Total: 25.42 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 3.52 Total: -28.44 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -0.65 Total: -91.71 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.80 Total: -10.32 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.74 Total: -3.63 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.85 Total: 45.19 kcal Total: -67.62 4.14 -63.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.708 kcal (2) G-P(sol) polarization free energy of solvation -67.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds