Wall clock time and date at job start Mon Mar 30 2020 07:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35901 * 116.99522 * 2 1 4 4 C 1.38707 * 120.04961 * 89.99805 * 3 2 1 5 5 C 1.50706 * 120.03542 * 359.97438 * 4 3 2 6 6 C 1.38337 * 119.92039 * 180.27073 * 4 3 2 7 7 F 1.35104 * 119.99558 * 179.72035 * 6 4 3 8 8 C 1.38518 * 120.00544 * 359.47049 * 6 4 3 9 9 C 1.38203 * 120.08548 * 0.55103 * 8 6 4 10 10 C 1.50699 * 119.96163 * 179.72465 * 9 8 6 11 11 H 1.09002 * 109.47310 * 219.98094 * 10 9 8 12 12 N 1.46901 * 109.46962 * 339.97622 * 10 9 8 13 13 C 1.50696 * 109.47299 * 99.97935 * 10 9 8 14 14 H 1.07997 * 119.99906 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00091 * 180.02562 * 13 10 9 16 16 N 1.31509 * 120.00083 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99942 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47005 * 59.99798 * 17 15 13 19 19 H 1.48499 * 109.47250 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47506 * 299.99892 * 17 15 13 21 21 C 1.38179 * 120.07848 * 359.70346 * 9 8 6 22 22 C 1.50703 * 120.00130 * 180.02562 * 21 9 8 23 23 H 1.08998 * 109.47694 * 300.00346 * 1 2 3 24 24 H 1.08996 * 109.46998 * 60.01135 * 1 2 3 25 25 H 1.09004 * 109.46881 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47015 * 90.00528 * 5 4 3 27 27 H 1.09000 * 109.46646 * 209.99680 * 5 4 3 28 28 H 1.09000 * 109.47248 * 330.00398 * 5 4 3 29 29 H 1.08003 * 119.95762 * 180.27355 * 8 6 4 30 30 H 1.00901 * 111.00087 * 296.04511 * 12 10 9 31 31 H 1.00898 * 111.00015 * 60.00205 * 12 10 9 32 32 H 0.96997 * 119.99909 * 180.02562 * 16 15 13 33 33 H 1.08994 * 109.47158 * 269.97695 * 22 21 9 34 34 H 1.08998 * 109.46874 * 29.97712 * 22 21 9 35 35 H 1.09000 * 109.46763 * 149.97756 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3611 1.8299 1.2006 5 6 2.0194 1.1604 2.5069 6 6 2.9840 3.0651 1.1975 7 9 3.2867 3.6718 2.3661 8 6 3.3021 3.6774 -0.0035 9 6 2.9877 3.0612 -1.2000 10 6 3.3295 3.7328 -2.5050 11 1 2.5139 3.5869 -3.2133 12 7 3.5297 5.1703 -2.2782 13 6 4.5934 3.1315 -3.0636 14 1 5.0988 2.3422 -2.5270 15 6 5.1050 3.5896 -4.2592 16 7 4.4897 4.5510 -4.9123 17 14 6.6720 2.8447 -4.9511 18 1 6.4699 1.3915 -5.1807 19 1 7.0087 3.5064 -6.2372 20 1 7.7829 3.0435 -3.9860 21 6 2.3608 1.8298 -1.2010 22 6 2.0194 1.1592 -2.5067 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5136 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 2.8526 0.5323 2.8221 27 1 1.8297 1.9198 3.2655 28 1 1.1290 0.5451 2.3779 29 1 3.7924 4.6398 -0.0050 30 1 2.6770 5.6091 -1.9646 31 1 4.2812 5.3320 -1.6247 32 1 4.8495 4.8731 -5.7536 33 1 1.0211 1.4634 -2.8212 34 1 2.7445 1.4518 -3.2660 35 1 2.0455 0.0772 -2.3771 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260462313.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:51 Heat of formation + Delta-G solvation = -63.668537 kcal Electronic energy + Delta-G solvation = -19111.755207 eV Core-core repulsion = 16024.367967 eV Total energy + Delta-G solvation = -3087.387241 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.55033 -39.92373 -37.35710 -34.61648 -32.51725 -31.62184 -30.28929 -27.89394 -26.54059 -25.66945 -25.42000 -22.54947 -21.03049 -19.83896 -17.29760 -16.93595 -16.49915 -15.74175 -15.45515 -14.97790 -14.67641 -14.58568 -14.27598 -14.08148 -13.22146 -13.04533 -12.93535 -12.74616 -12.40693 -12.12646 -11.94249 -11.63520 -11.36754 -11.17872 -10.94935 -10.72363 -10.63201 -10.60312 -9.98923 -9.67709 -9.31142 -8.49348 -8.11457 -7.79653 -7.19864 -5.93803 -4.09417 1.48033 1.63465 3.33114 3.37869 3.40979 3.66215 4.10791 4.46175 4.74828 5.04560 5.11123 5.29397 5.30304 5.35100 5.46282 5.57087 5.69043 5.73384 5.78921 5.92698 6.06173 6.15541 6.25113 6.26517 6.51586 6.58891 6.71423 6.87575 7.08667 7.15087 7.39439 7.76851 7.85010 8.09397 8.55091 8.91521 9.06777 9.59491 11.10127 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.007124 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.009931 B = 3929.383637 C = 4485.221681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.331 6.331 3 C 0.110 3.890 4 C -0.164 4.164 5 C -0.099 4.099 6 C 0.098 3.902 7 F -0.145 7.145 8 C -0.163 4.163 9 C -0.040 4.040 10 C 0.256 3.744 11 H 0.057 0.943 12 N -0.811 5.811 13 C -0.531 4.531 14 H 0.055 0.945 15 C 0.086 3.914 16 N -0.845 5.845 17 Si 0.885 3.115 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 C -0.098 4.098 22 C -0.116 4.116 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.132 0.868 30 H 0.300 0.700 31 H 0.319 0.681 32 H 0.258 0.742 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.610 -5.554 9.586 13.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.247 6.247 3 C 0.067 3.933 4 C -0.165 4.165 5 C -0.156 4.156 6 C 0.078 3.922 7 F -0.124 7.124 8 C -0.182 4.182 9 C -0.042 4.042 10 C 0.146 3.854 11 H 0.075 0.925 12 N -0.338 5.338 13 C -0.569 4.569 14 H 0.073 0.927 15 C -0.121 4.121 16 N -0.479 5.479 17 Si 0.712 3.288 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.099 4.099 22 C -0.172 4.172 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.149 0.851 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.352 -5.524 8.656 12.630 hybrid contribution 0.634 -0.281 0.961 1.185 sum -6.719 -5.806 9.617 13.090 Atomic orbital electron populations 1.22940 0.79632 1.02723 1.00643 1.85980 1.19358 1.25081 1.94312 1.18060 0.98154 0.86144 0.90962 1.19851 1.05578 0.94817 0.96244 1.20495 1.01835 0.99986 0.93279 1.17264 1.01639 0.92099 0.81150 1.91425 1.91402 1.82928 1.46644 1.21031 1.04238 1.02310 0.90654 1.21541 0.90976 0.93407 0.98323 1.18276 0.97853 0.83573 0.85659 0.92545 1.59160 1.07475 1.13929 1.53220 1.20699 1.09385 1.20650 1.06190 0.92716 1.24926 0.96516 0.94238 0.96462 1.70082 1.38274 1.25123 1.14427 0.86804 0.84222 0.79424 0.78316 1.20224 1.21298 1.20308 1.20124 1.00261 0.94673 0.94850 1.20790 1.02129 0.99396 0.94882 0.93890 0.93395 0.89130 0.91336 0.91908 0.91580 0.85051 0.88978 0.86751 0.93248 0.92366 0.88117 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.76 101.05 1.09 1.49 16 2 O -0.33 -5.20 8.68 -19.43 -0.17 -5.37 16 3 C 0.11 1.95 5.67 -39.23 -0.22 1.73 16 4 C -0.16 -2.79 5.90 -104.41 -0.62 -3.40 16 5 C -0.10 -1.36 9.62 36.01 0.35 -1.01 16 6 C 0.10 1.76 7.24 -39.44 -0.29 1.48 16 7 F -0.15 -2.50 16.47 2.25 0.04 -2.47 16 8 C -0.16 -3.13 9.23 -39.49 -0.36 -3.49 16 9 C -0.04 -0.82 5.01 -104.66 -0.52 -1.34 16 10 C 0.26 6.00 2.18 -70.02 -0.15 5.85 16 11 H 0.06 1.43 7.28 -51.93 -0.38 1.05 16 12 N -0.81 -18.25 8.01 -6.65 -0.05 -18.31 16 13 C -0.53 -13.89 7.51 -34.44 -0.26 -14.15 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.09 2.31 5.39 -17.82 -0.10 2.21 16 16 N -0.84 -23.68 12.77 55.43 0.71 -22.97 16 17 Si 0.88 20.87 29.54 -169.99 -5.02 15.85 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.10 -1.89 5.89 -104.46 -0.61 -2.50 16 22 C -0.12 -2.09 9.03 36.01 0.33 -1.77 16 23 H 0.04 0.45 7.26 -51.93 -0.38 0.08 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.80 7.63 -51.93 -0.40 0.40 16 28 H 0.07 0.81 6.32 -51.93 -0.33 0.48 16 29 H 0.13 2.40 6.24 -52.48 -0.33 2.07 16 30 H 0.30 6.00 9.06 -39.29 -0.36 5.65 16 31 H 0.32 6.92 7.28 -39.29 -0.29 6.63 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.10 2.08 5.91 -51.93 -0.31 1.77 16 35 H 0.06 1.02 7.53 -51.93 -0.39 0.63 16 LS Contribution 293.32 15.07 4.42 4.42 Total: -1.00 -28.54 293.32 -5.83 -34.37 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.38 Total: 9.39 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -1.38 Total: -14.91 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.65 Total: -41.28 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.17 Total: -5.37 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.54 -5.83 -34.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462313.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.301 kcal (2) G-P(sol) polarization free energy of solvation -28.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds