Wall clock time and date at job start Mon Mar 30 2020 07:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35901 * 116.99522 * 2 1 4 4 C 1.38707 * 120.04961 * 89.99805 * 3 2 1 5 5 C 1.50706 * 120.03542 * 359.97438 * 4 3 2 6 6 C 1.38337 * 119.92039 * 180.27073 * 4 3 2 7 7 F 1.35104 * 119.99558 * 179.72035 * 6 4 3 8 8 C 1.38518 * 120.00544 * 359.47049 * 6 4 3 9 9 C 1.38203 * 120.08548 * 0.55103 * 8 6 4 10 10 C 1.50699 * 119.96163 * 179.72465 * 9 8 6 11 11 H 1.09002 * 109.47310 * 219.98094 * 10 9 8 12 12 N 1.46901 * 109.46962 * 339.97622 * 10 9 8 13 13 C 1.50696 * 109.47299 * 99.97935 * 10 9 8 14 14 H 1.07997 * 119.99906 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00091 * 180.02562 * 13 10 9 16 16 N 1.31509 * 120.00083 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99942 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.47005 * 59.99798 * 17 15 13 19 19 H 1.48499 * 109.47250 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47506 * 299.99892 * 17 15 13 21 21 C 1.38179 * 120.07848 * 359.70346 * 9 8 6 22 22 C 1.50703 * 120.00130 * 180.02562 * 21 9 8 23 23 H 1.08998 * 109.47694 * 300.00346 * 1 2 3 24 24 H 1.08996 * 109.46998 * 60.01135 * 1 2 3 25 25 H 1.09004 * 109.46881 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47015 * 90.00528 * 5 4 3 27 27 H 1.09000 * 109.46646 * 209.99680 * 5 4 3 28 28 H 1.09000 * 109.47248 * 330.00398 * 5 4 3 29 29 H 1.08003 * 119.95762 * 180.27355 * 8 6 4 30 30 H 1.00901 * 111.00087 * 296.04511 * 12 10 9 31 31 H 1.00898 * 111.00015 * 60.00205 * 12 10 9 32 32 H 0.96997 * 119.99909 * 180.02562 * 16 15 13 33 33 H 1.08994 * 109.47158 * 269.97695 * 22 21 9 34 34 H 1.08998 * 109.46874 * 29.97712 * 22 21 9 35 35 H 1.09000 * 109.46763 * 149.97756 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3611 1.8299 1.2006 5 6 2.0194 1.1604 2.5069 6 6 2.9840 3.0651 1.1975 7 9 3.2867 3.6718 2.3661 8 6 3.3021 3.6774 -0.0035 9 6 2.9877 3.0612 -1.2000 10 6 3.3295 3.7328 -2.5050 11 1 2.5139 3.5869 -3.2133 12 7 3.5297 5.1703 -2.2782 13 6 4.5934 3.1315 -3.0636 14 1 5.0988 2.3422 -2.5270 15 6 5.1050 3.5896 -4.2592 16 7 4.4897 4.5510 -4.9123 17 14 6.6720 2.8447 -4.9511 18 1 6.4699 1.3915 -5.1807 19 1 7.0087 3.5064 -6.2372 20 1 7.7829 3.0435 -3.9860 21 6 2.3608 1.8298 -1.2010 22 6 2.0194 1.1592 -2.5067 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5136 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 2.8526 0.5323 2.8221 27 1 1.8297 1.9198 3.2655 28 1 1.1290 0.5451 2.3779 29 1 3.7924 4.6398 -0.0050 30 1 2.6770 5.6091 -1.9646 31 1 4.2812 5.3320 -1.6247 32 1 4.8495 4.8731 -5.7536 33 1 1.0211 1.4634 -2.8212 34 1 2.7445 1.4518 -3.2660 35 1 2.0455 0.0772 -2.3771 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260462313.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:50 Heat of formation + Delta-G solvation = -81.347963 kcal Electronic energy + Delta-G solvation = -19112.521845 eV Core-core repulsion = 16024.367967 eV Total energy + Delta-G solvation = -3088.153878 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.93733 -41.28647 -38.74277 -36.22203 -34.15700 -33.35488 -31.76135 -29.09736 -28.19750 -27.12170 -26.85406 -24.17576 -22.50794 -21.31935 -18.75075 -18.48937 -18.24632 -17.02683 -16.85301 -16.53630 -16.21933 -16.03182 -15.87283 -15.48745 -14.74915 -14.51005 -14.34730 -14.11100 -13.83275 -13.55415 -13.17332 -12.95384 -12.90523 -12.77345 -12.72507 -12.42108 -12.26931 -12.03128 -11.67002 -11.22213 -10.97807 -10.54681 -9.53853 -9.29058 -8.96435 -7.98089 -6.18570 0.07211 0.19407 1.44562 1.45630 1.52410 2.31200 2.49115 2.77466 3.24548 3.36904 3.76397 3.81280 3.98775 4.26688 4.38582 4.42200 4.48400 4.51328 4.64300 4.67957 4.75133 4.77487 4.84943 4.94099 5.07666 5.15512 5.24313 5.35506 5.50917 5.66783 5.75386 5.77329 6.16454 6.50701 6.64663 7.07041 7.23524 7.52920 9.04772 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.007124 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.009931 B = 3929.383637 C = 4485.221681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.339 6.339 3 C 0.117 3.883 4 C -0.159 4.159 5 C -0.098 4.098 6 C 0.094 3.906 7 F -0.140 7.140 8 C -0.169 4.169 9 C -0.060 4.060 10 C 0.265 3.735 11 H 0.030 0.970 12 N -0.822 5.822 13 C -0.535 4.535 14 H 0.042 0.958 15 C 0.042 3.958 16 N -0.876 5.876 17 Si 0.941 3.059 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.278 1.278 21 C -0.113 4.113 22 C -0.107 4.107 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.121 0.879 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.134 0.866 30 H 0.313 0.687 31 H 0.323 0.677 32 H 0.256 0.744 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.207 -6.879 11.098 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.256 6.256 3 C 0.073 3.927 4 C -0.161 4.161 5 C -0.154 4.154 6 C 0.074 3.926 7 F -0.118 7.118 8 C -0.188 4.188 9 C -0.063 4.063 10 C 0.155 3.845 11 H 0.047 0.953 12 N -0.349 5.349 13 C -0.574 4.574 14 H 0.061 0.939 15 C -0.162 4.162 16 N -0.511 5.511 17 Si 0.767 3.233 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.203 1.203 21 C -0.115 4.115 22 C -0.163 4.163 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.139 0.861 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.151 0.849 30 H 0.125 0.875 31 H 0.137 0.863 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.958 -6.859 10.180 14.629 hybrid contribution 0.724 0.063 0.578 0.929 sum -7.234 -6.796 10.759 14.638 Atomic orbital electron populations 1.23252 0.77125 1.04999 1.01277 1.85954 1.21631 1.23760 1.94304 1.18036 0.97809 0.86447 0.90430 1.20222 1.03958 0.94234 0.97642 1.20594 1.02894 1.00421 0.91536 1.17266 1.01808 0.92589 0.80896 1.91436 1.91367 1.82924 1.46119 1.21030 1.04480 1.02519 0.90814 1.21179 0.93270 0.94425 0.97399 1.17879 0.95784 0.84158 0.86684 0.95252 1.58991 1.08427 1.13784 1.53746 1.20910 1.10183 1.20116 1.06168 0.93947 1.25557 0.99104 0.94688 0.96875 1.70190 1.39645 1.26517 1.14779 0.85918 0.80959 0.78846 0.77601 1.19730 1.20976 1.20337 1.20284 1.00593 0.94555 0.96026 1.20673 1.01915 1.00030 0.93701 0.92583 0.93486 0.86099 0.90489 0.90783 0.89816 0.84873 0.87497 0.86344 0.93452 0.90946 0.91289 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.76 113.37 1.22 1.75 16 2 O -0.34 -9.74 8.68 -92.43 -0.80 -10.54 16 3 C 0.12 3.91 5.67 22.50 0.13 4.04 16 4 C -0.16 -5.06 5.90 -19.73 -0.12 -5.18 16 5 C -0.10 -2.35 9.62 71.24 0.69 -1.66 16 6 C 0.09 3.24 7.24 22.36 0.16 3.40 16 7 F -0.14 -4.55 16.47 44.97 0.74 -3.81 16 8 C -0.17 -6.44 9.23 22.33 0.21 -6.23 16 9 C -0.06 -2.49 5.01 -19.89 -0.10 -2.59 16 10 C 0.27 12.74 2.18 43.42 0.09 12.84 16 11 H 0.03 1.56 7.28 -2.39 -0.02 1.55 16 12 N -0.82 -37.67 8.01 -174.96 -1.40 -39.07 16 13 C -0.54 -28.62 7.51 25.60 0.19 -28.43 16 14 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 15 C 0.04 2.28 5.39 84.66 0.46 2.74 16 16 N -0.88 -49.98 12.77 21.45 0.27 -49.70 16 17 Si 0.94 43.29 29.54 68.60 2.03 45.32 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 C -0.11 -4.32 5.89 -19.76 -0.12 -4.44 16 22 C -0.11 -3.86 9.03 71.24 0.64 -3.21 16 23 H 0.06 0.98 7.26 -2.39 -0.02 0.96 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 1.62 7.63 -2.39 -0.02 1.60 16 28 H 0.08 1.71 6.32 -2.39 -0.02 1.70 16 29 H 0.13 4.88 6.24 -2.91 -0.02 4.86 16 30 H 0.31 12.75 9.06 -89.69 -0.81 11.94 16 31 H 0.32 14.22 7.28 -89.70 -0.65 13.56 16 32 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.07 2.94 5.91 -2.39 -0.01 2.92 16 35 H 0.07 2.42 7.53 -2.39 -0.02 2.40 16 Total: -1.00 -60.67 293.32 3.96 -56.71 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -0.33 Total: 28.08 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: 3.45 Total: -26.99 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -1.13 Total: -88.77 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.80 Total: -10.54 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.74 Total: -3.81 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -60.67 3.96 -56.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462313.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.639 kcal (2) G-P(sol) polarization free energy of solvation -60.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds