Wall clock time and date at job start Mon Mar 30 2020 06:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35896 * 117.00305 * 2 1 4 4 C 1.38770 * 120.04333 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.99753 * 179.97438 * 4 3 2 6 6 C 1.38253 * 120.08081 * 359.72500 * 5 4 3 7 7 C 1.50696 * 119.96100 * 180.29269 * 6 5 4 8 8 C 1.38484 * 120.08228 * 0.55441 * 6 5 4 9 9 F 1.35101 * 119.99699 * 179.72518 * 8 6 5 10 10 C 1.38382 * 120.00402 * 359.44293 * 8 6 5 11 11 C 1.50702 * 120.04103 * 180.25664 * 10 8 6 12 12 H 1.08998 * 109.47027 * 179.97438 * 11 10 8 13 13 C 1.50704 * 109.46915 * 60.00218 * 11 10 8 14 14 H 1.07993 * 119.99697 * 274.82929 * 13 11 10 15 15 C 1.37873 * 119.99883 * 94.83061 * 13 11 10 16 16 N 1.31516 * 120.00407 * 5.68827 * 15 13 11 17 17 Si 1.86807 * 119.99728 * 185.69113 * 15 13 11 18 18 H 1.48493 * 109.47012 * 59.99808 * 17 15 13 19 19 H 1.48498 * 109.47065 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46944 * 300.00009 * 17 15 13 21 21 C 1.52998 * 109.47059 * 300.00225 * 11 10 8 22 22 N 1.46896 * 109.46962 * 185.45148 * 21 11 10 23 23 H 1.08999 * 109.47448 * 300.00125 * 1 2 3 24 24 H 1.09005 * 109.47047 * 59.99979 * 1 2 3 25 25 H 1.08998 * 109.47458 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00153 * 359.95429 * 4 3 2 27 27 H 1.08005 * 119.96142 * 179.97438 * 5 4 3 28 28 H 1.08997 * 109.47665 * 270.25562 * 7 6 5 29 29 H 1.08997 * 109.46862 * 30.25595 * 7 6 5 30 30 H 1.09006 * 109.46850 * 150.25575 * 7 6 5 31 31 H 0.96998 * 119.99870 * 180.02562 * 16 15 13 32 32 H 1.09003 * 109.47167 * 305.45117 * 21 11 10 33 33 H 1.08998 * 109.47111 * 65.44747 * 21 11 10 34 34 H 1.00898 * 111.00196 * 56.04348 * 22 21 11 35 35 H 1.00906 * 111.00041 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2911 2.3752 0.0005 5 6 1.9192 3.6054 0.0011 6 6 3.2998 3.6786 0.0068 7 6 3.9823 5.0221 0.0141 8 6 4.0564 2.5187 0.0004 9 9 5.4054 2.5922 0.0005 10 6 3.4307 1.2844 0.0000 11 6 4.2533 0.0216 -0.0011 12 1 3.5905 -0.8437 -0.0009 13 6 5.1232 -0.0122 1.2291 14 1 6.0814 0.4858 1.2266 15 6 4.6956 -0.6791 2.3575 16 7 3.5825 -1.3787 2.3259 17 14 5.6975 -0.5886 3.9316 18 1 5.8043 0.8262 4.3697 19 1 5.0285 -1.3861 4.9907 20 1 7.0564 -1.1346 3.6855 21 6 5.1355 -0.0113 -1.2507 22 7 5.8394 -1.2988 -1.3193 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.2125 2.3196 0.0002 27 1 1.3311 4.5114 0.0011 28 1 4.1468 5.3517 -1.0118 29 1 3.3533 5.7463 0.5318 30 1 4.9403 4.9402 0.5275 31 1 3.2816 -1.8475 3.1199 32 1 4.5138 0.1107 -2.1377 33 1 5.8633 0.7987 -1.2030 34 1 5.1876 -2.0687 -1.2994 35 1 6.4289 -1.3455 -2.1369 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260469068.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:01 Heat of formation + Delta-G solvation = -62.480069 kcal Electronic energy + Delta-G solvation = -19506.512850 eV Core-core repulsion = 16419.177145 eV Total energy + Delta-G solvation = -3087.335705 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.94506 -39.44648 -36.78686 -35.17348 -32.18529 -31.57479 -30.36080 -27.48476 -27.05394 -25.38576 -24.09107 -22.06362 -20.66879 -19.59323 -17.60909 -16.83122 -15.83127 -15.27437 -15.16052 -14.83934 -14.56933 -14.43987 -13.98375 -13.84139 -13.46983 -12.90153 -12.60062 -12.40965 -12.20051 -11.94779 -11.75351 -11.54495 -11.31489 -11.03151 -10.80504 -10.62194 -10.39458 -10.16441 -10.04712 -9.40189 -8.91473 -8.29588 -7.76759 -7.58025 -7.27819 -5.84766 -3.83366 1.92625 2.04118 3.44254 3.46114 3.51605 3.92469 4.32023 4.58976 5.10099 5.30161 5.35036 5.44484 5.46484 5.57975 5.65709 5.69247 5.79196 5.88675 5.93369 6.07664 6.30093 6.34512 6.37564 6.55896 6.68502 6.80044 6.96060 7.03925 7.23957 7.56884 7.91986 8.06802 8.10493 8.21745 8.42017 8.54751 9.21025 9.75285 11.22509 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.015676 B = 0.010142 C = 0.008969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.765471 B = 2760.081857 C = 3121.034247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.284 6.284 3 C 0.145 3.855 4 C -0.226 4.226 5 C -0.086 4.086 6 C -0.171 4.171 7 C -0.101 4.101 8 C 0.135 3.865 9 F -0.129 7.129 10 C -0.089 4.089 11 C 0.071 3.929 12 H 0.082 0.918 13 C -0.477 4.477 14 H 0.057 0.943 15 C 0.066 3.934 16 N -0.882 5.882 17 Si 0.886 3.114 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.276 1.276 21 C 0.075 3.925 22 N -0.828 5.828 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.093 0.907 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.257 0.743 32 H -0.010 1.010 33 H 0.061 0.939 34 H 0.335 0.665 35 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.660 6.838 -6.412 10.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.196 6.196 3 C 0.099 3.901 4 C -0.245 4.245 5 C -0.104 4.104 6 C -0.172 4.172 7 C -0.157 4.157 8 C 0.115 3.885 9 F -0.107 7.107 10 C -0.092 4.092 11 C 0.052 3.948 12 H 0.100 0.900 13 C -0.515 4.515 14 H 0.075 0.925 15 C -0.136 4.136 16 N -0.519 5.519 17 Si 0.714 3.286 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.202 1.202 21 C -0.055 4.055 22 N -0.356 5.356 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.111 0.889 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.008 0.992 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.303 6.738 -5.590 10.236 hybrid contribution -0.211 0.106 0.227 0.328 sum -5.513 6.844 -5.362 10.296 Atomic orbital electron populations 1.22922 0.80250 1.03150 1.00135 1.86295 1.19402 1.25941 1.87995 1.18543 0.91464 0.84026 0.96053 1.21092 0.99397 0.92496 1.11471 1.20291 0.92709 0.96688 1.00738 1.19683 0.94064 0.94378 1.09089 1.20543 1.00375 0.93246 1.01573 1.16978 0.76954 0.92547 1.02019 1.91418 1.28925 1.96874 1.93506 1.20204 0.91462 0.97174 1.00339 1.17889 0.93279 0.90870 0.92747 0.89966 1.20778 1.02534 1.32371 0.95786 0.92478 1.24945 0.95082 0.94909 0.98698 1.69963 1.22144 1.31214 1.28602 0.86761 0.80597 0.77873 0.83394 1.20527 1.21615 1.20185 1.21931 0.96028 0.91418 0.96171 1.58475 1.27199 1.04350 1.45564 0.93360 0.93766 0.88879 0.86161 0.86277 0.92022 0.92023 0.91703 0.93328 0.99153 0.92091 0.85296 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 16 2 O -0.28 -6.03 9.26 -19.41 -0.18 -6.21 16 3 C 0.15 3.12 6.66 -39.22 -0.26 2.85 16 4 C -0.23 -4.02 9.04 -39.42 -0.36 -4.38 16 5 C -0.09 -1.44 9.69 -39.62 -0.38 -1.82 16 6 C -0.17 -3.15 5.89 -104.53 -0.62 -3.76 16 7 C -0.10 -1.48 9.83 36.00 0.35 -1.13 16 8 C 0.13 2.95 6.75 -39.44 -0.27 2.68 16 9 F -0.13 -2.91 13.41 2.25 0.03 -2.88 16 10 C -0.09 -2.10 4.79 -104.41 -0.50 -2.60 16 11 C 0.07 1.80 2.12 -92.92 -0.20 1.61 16 12 H 0.08 2.29 6.09 -51.93 -0.32 1.98 16 13 C -0.48 -13.41 7.14 -34.44 -0.25 -13.66 16 14 H 0.06 1.66 7.49 -52.49 -0.39 1.27 16 15 C 0.07 1.87 5.45 -17.82 -0.10 1.78 16 16 N -0.88 -25.68 12.77 55.43 0.71 -24.97 16 17 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.08 1.68 5.87 -3.83 -0.02 1.66 16 22 N -0.83 -17.18 9.35 -10.37 -0.10 -17.28 16 23 H 0.05 0.69 7.66 -51.93 -0.40 0.29 16 24 H 0.04 0.56 7.66 -51.93 -0.40 0.16 16 25 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.12 1.77 6.30 -52.49 -0.33 1.44 16 27 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.06 0.99 7.64 -51.93 -0.40 0.59 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H -0.01 -0.20 8.14 -51.93 -0.42 -0.63 16 33 H 0.06 1.40 6.47 -51.93 -0.34 1.06 16 34 H 0.33 6.80 8.99 -39.29 -0.35 6.44 16 35 H 0.32 5.45 9.08 -39.29 -0.36 5.09 16 LS Contribution 294.95 15.07 4.44 4.44 Total: -1.00 -31.37 294.95 -6.24 -37.60 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -4.52 Total: 7.21 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -1.60 Total: -15.30 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.61 Total: -42.25 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.18 Total: -6.21 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.03 Total: -2.88 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.37 -6.24 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260469068.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.875 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds