Wall clock time and date at job start Mon Mar 30 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35893 * 116.99937 * 2 1 4 4 C 1.38768 * 120.04575 * 0.02562 * 3 2 1 5 5 C 1.38133 * 119.99626 * 179.97438 * 4 3 2 6 6 C 1.38251 * 120.07992 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.95632 * 179.97438 * 6 5 4 8 8 C 1.38480 * 120.08685 * 359.72448 * 6 5 4 9 9 F 1.35096 * 119.99995 * 180.29656 * 8 6 5 10 10 C 1.38384 * 119.99879 * 0.54967 * 8 6 5 11 11 C 1.50701 * 120.03529 * 179.72241 * 10 8 6 12 12 H 1.09008 * 109.46953 * 179.73017 * 11 10 8 13 13 C 1.50697 * 109.47359 * 299.72518 * 11 10 8 14 14 H 1.08008 * 120.00267 * 0.02562 * 13 11 10 15 15 C 1.37879 * 120.00459 * 180.02562 * 13 11 10 16 16 N 1.31516 * 119.99554 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00058 * 180.02562 * 15 13 11 18 18 H 1.48491 * 109.47537 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47011 * 120.00386 * 17 15 13 20 20 H 1.48507 * 109.46913 * 239.99447 * 17 15 13 21 21 C 1.52993 * 109.47270 * 59.72861 * 11 10 8 22 22 N 1.46905 * 109.47039 * 64.99898 * 21 11 10 23 23 H 1.09005 * 109.47489 * 300.00515 * 1 2 3 24 24 H 1.09002 * 109.47208 * 60.00310 * 1 2 3 25 25 H 1.09002 * 109.47277 * 180.02562 * 1 2 3 26 26 H 1.08006 * 119.99957 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.96126 * 180.02562 * 5 4 3 28 28 H 1.09006 * 109.47195 * 90.00273 * 7 6 5 29 29 H 1.08994 * 109.47429 * 209.99788 * 7 6 5 30 30 H 1.09000 * 109.47590 * 330.00362 * 7 6 5 31 31 H 0.96998 * 119.99988 * 180.02562 * 16 15 13 32 32 H 1.09001 * 109.47393 * 305.00180 * 21 11 10 33 33 H 1.08998 * 109.47408 * 184.99825 * 21 11 10 34 34 H 1.00901 * 110.99869 * 56.04956 * 22 21 11 35 35 H 1.00896 * 110.99543 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9192 3.6055 0.0011 6 6 3.2998 3.6786 0.0005 7 6 3.9822 5.0222 0.0005 8 6 4.0564 2.5187 0.0052 9 9 5.4053 2.5922 0.0108 10 6 3.4307 1.2844 -0.0010 11 6 4.2533 0.0218 -0.0023 12 1 3.5905 -0.8437 -0.0026 13 6 5.1222 -0.0106 -1.2331 14 1 5.0830 0.8022 -1.9434 15 6 5.9672 -1.0777 -1.4527 16 7 6.0145 -2.0677 -0.5882 17 14 7.0447 -1.1174 -2.9781 18 1 6.8062 0.1064 -3.7846 19 1 8.4727 -1.1730 -2.5742 20 1 6.7124 -2.3171 -3.7878 21 6 5.1365 -0.0128 1.2465 22 7 4.2892 -0.1021 2.4432 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.2124 2.3195 0.0014 27 1 1.3311 4.5113 0.0019 28 1 4.1472 5.3459 1.0283 29 1 4.9400 4.9433 -0.5136 30 1 3.3530 5.7493 -0.5128 31 1 6.6093 -2.8182 -0.7424 32 1 5.7360 0.8964 1.2929 33 1 5.7950 -0.8802 1.2020 34 1 3.6771 -0.9028 2.3940 35 1 4.8495 -0.1259 3.2820 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260469073.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:03 Heat of formation + Delta-G solvation = -86.236774 kcal Electronic energy + Delta-G solvation = -19463.330250 eV Core-core repulsion = 16374.964377 eV Total energy + Delta-G solvation = -3088.365873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.59689 -40.96966 -38.28883 -37.05750 -34.12979 -33.11143 -31.86780 -29.27215 -28.48408 -26.71730 -25.90983 -23.82704 -22.17980 -21.32436 -19.09342 -18.72742 -17.59755 -16.92368 -16.64400 -16.62187 -16.35647 -16.06837 -15.58955 -15.32828 -15.02673 -14.31411 -14.09184 -13.94605 -13.75041 -13.64100 -13.24029 -12.94633 -12.86339 -12.68926 -12.58644 -12.46073 -12.18510 -11.81210 -11.51373 -11.28980 -11.14451 -10.52808 -9.40006 -9.27728 -8.80178 -8.10822 -6.25033 0.42945 0.57539 1.35630 1.37256 1.49547 2.39834 2.52527 2.84327 3.13568 3.70056 3.97447 4.04920 4.10638 4.15222 4.39828 4.49684 4.53259 4.65266 4.77310 4.83140 4.86052 4.87272 5.08786 5.14886 5.27103 5.35252 5.43556 5.50401 5.58256 5.85370 5.96418 6.04614 6.21571 6.50903 6.66732 6.72123 6.90458 7.40520 8.90986 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.018207 B = 0.009189 C = 0.007788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.533713 B = 3046.250953 C = 3594.589808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.126 3.874 4 C -0.211 4.211 5 C -0.070 4.070 6 C -0.171 4.171 7 C -0.100 4.100 8 C 0.107 3.893 9 F -0.145 7.145 10 C -0.116 4.116 11 C 0.099 3.901 12 H 0.014 0.986 13 C -0.516 4.516 14 H 0.041 0.959 15 C 0.016 3.984 16 N -0.914 5.914 17 Si 0.952 3.048 18 H -0.272 1.272 19 H -0.277 1.277 20 H -0.276 1.276 21 C 0.074 3.926 22 N -0.845 5.845 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.161 0.839 27 H 0.170 0.830 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.261 0.739 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.333 0.667 35 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.551 9.585 2.577 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.080 3.920 4 C -0.229 4.229 5 C -0.087 4.087 6 C -0.172 4.172 7 C -0.156 4.156 8 C 0.088 3.912 9 F -0.124 7.124 10 C -0.117 4.117 11 C 0.080 3.920 12 H 0.032 0.968 13 C -0.555 4.555 14 H 0.059 0.941 15 C -0.182 4.182 16 N -0.554 5.554 17 Si 0.778 3.222 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.201 1.201 21 C -0.057 4.057 22 N -0.373 5.373 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.128 0.872 26 H 0.179 0.821 27 H 0.187 0.813 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.144 0.856 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.614 9.938 2.361 14.731 hybrid contribution 1.498 -1.471 -0.557 2.172 sum -9.116 8.466 1.804 12.571 Atomic orbital electron populations 1.23321 0.76817 1.05087 1.02299 1.86142 1.23133 1.26962 1.88601 1.18677 0.90830 0.85382 0.97071 1.21487 1.01146 0.91253 1.09048 1.20900 0.92046 0.98290 0.97510 1.20158 0.95082 0.94535 1.07440 1.20631 1.00076 0.91947 1.02953 1.17383 0.76692 0.93676 1.03433 1.91377 1.30259 1.96952 1.93770 1.19671 0.92568 0.95857 1.03614 1.17379 0.92044 0.89666 0.92894 0.96814 1.21314 1.22855 1.04958 1.06377 0.94082 1.25665 0.98120 0.95084 0.99377 1.70000 1.39189 1.09499 1.36710 0.85590 0.78722 0.78023 0.79898 1.19660 1.20313 1.20147 1.21746 0.95302 0.99111 0.89548 1.58892 1.25028 1.49009 1.04340 0.91189 0.91587 0.87214 0.82143 0.81279 0.90511 0.93042 0.88599 0.92950 0.94409 0.94481 0.85628 0.85537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.58 16 2 O -0.33 -13.04 9.26 -92.35 -0.86 -13.89 16 3 C 0.13 5.06 6.66 22.50 0.15 5.21 16 4 C -0.21 -6.39 9.04 22.37 0.20 -6.19 16 5 C -0.07 -1.95 9.69 22.25 0.22 -1.74 16 6 C -0.17 -5.84 5.89 -19.80 -0.12 -5.96 16 7 C -0.10 -2.62 9.83 71.24 0.70 -1.92 16 8 C 0.11 4.76 6.61 22.36 0.15 4.91 16 9 F -0.15 -7.02 13.57 44.97 0.61 -6.41 16 10 C -0.12 -5.48 4.48 -19.72 -0.09 -5.56 16 11 C 0.10 5.38 1.96 -12.29 -0.02 5.35 16 12 H 0.01 0.82 6.99 -2.38 -0.02 0.81 16 13 C -0.52 -30.40 7.61 25.60 0.19 -30.21 16 14 H 0.04 2.47 7.61 -2.91 -0.02 2.45 16 15 C 0.02 0.93 5.29 84.65 0.45 1.37 16 16 N -0.91 -54.08 11.30 21.45 0.24 -53.83 16 17 Si 0.95 45.76 29.54 68.60 2.03 47.79 16 18 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 C 0.07 3.81 5.87 86.30 0.51 4.32 16 22 N -0.84 -36.29 9.34 -186.72 -1.74 -38.03 16 23 H 0.07 1.40 7.66 -2.38 -0.02 1.38 16 24 H 0.07 1.37 7.66 -2.39 -0.02 1.35 16 25 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.16 3.51 6.30 -2.91 -0.02 3.49 16 27 H 0.17 3.11 8.06 -2.91 -0.02 3.08 16 28 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.05 1.49 7.64 -2.39 -0.02 1.47 16 30 H 0.10 1.86 8.08 -2.39 -0.02 1.84 16 31 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.04 2.02 6.16 -2.39 -0.01 2.00 16 33 H 0.04 2.12 5.96 -2.39 -0.01 2.11 16 34 H 0.33 14.07 8.99 -89.69 -0.81 13.27 16 35 H 0.33 12.44 9.08 -89.70 -0.81 11.63 16 Total: -1.00 -70.26 291.85 3.24 -67.02 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.49 Total: 26.19 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 3.45 Total: -28.83 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -1.50 Total: -91.86 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.86 Total: -13.89 kcal Atomic # 9 Polarization: -7.02 SS G_CDS: 0.61 Total: -6.41 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -70.26 3.24 -67.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260469073.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.215 kcal (2) G-P(sol) polarization free energy of solvation -70.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds