Wall clock time and date at job start Mon Mar 30 2020 07:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35956 * 116.99886 * 2 1 4 4 C 1.38662 * 120.06478 * 0.02562 * 3 2 1 5 5 C 1.38173 * 119.97200 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.95691 * 179.97438 * 5 4 3 7 7 C 1.38269 * 120.09529 * 359.97438 * 5 4 3 8 8 C 1.38252 * 120.12381 * 359.97438 * 7 5 4 9 9 C 1.50700 * 119.98687 * 180.02562 * 8 7 5 10 10 H 1.08993 * 109.47604 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.46869 * 59.99676 * 9 8 7 12 12 H 1.07994 * 120.00152 * 302.07706 * 11 9 8 13 13 C 1.37879 * 120.00053 * 122.07759 * 11 9 8 14 14 N 1.31506 * 120.00005 * 172.99315 * 13 11 9 15 15 Si 1.86803 * 119.99655 * 352.99055 * 13 11 9 16 16 H 1.48504 * 109.47061 * 85.11613 * 15 13 11 17 17 H 1.48498 * 109.47042 * 205.11604 * 15 13 11 18 18 H 1.48498 * 109.47284 * 325.11544 * 15 13 11 19 19 C 1.53002 * 109.47092 * 300.00050 * 9 8 7 20 20 N 1.46893 * 109.47126 * 184.84622 * 19 9 8 21 21 C 1.38330 * 120.03347 * 0.02562 * 8 7 5 22 22 F 1.35099 * 120.05375 * 179.97438 * 21 8 7 23 23 H 1.09000 * 109.47352 * 299.99677 * 1 2 3 24 24 H 1.09000 * 109.47454 * 59.99834 * 1 2 3 25 25 H 1.09005 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.08005 * 120.00981 * 0.27777 * 4 3 2 27 27 H 1.09001 * 109.47166 * 89.99283 * 6 5 4 28 28 H 1.08995 * 109.47227 * 210.00173 * 6 5 4 29 29 H 1.09007 * 109.46725 * 329.99603 * 6 5 4 30 30 H 1.08001 * 119.93476 * 179.97438 * 7 5 4 31 31 H 0.97005 * 120.00161 * 179.97438 * 14 13 11 32 32 H 1.08993 * 109.46921 * 304.84845 * 19 9 8 33 33 H 1.09001 * 109.47330 * 64.84809 * 19 9 8 34 34 H 1.00904 * 111.00035 * 65.33949 * 20 19 9 35 35 H 1.00903 * 110.99988 * 189.29263 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9215 3.6053 0.0011 6 6 1.1018 4.8698 0.0011 7 6 3.3023 3.6777 0.0016 8 6 4.0579 2.5199 0.0021 9 6 5.5626 2.6025 0.0033 10 1 5.9817 1.5964 0.0041 11 6 6.0243 3.3394 1.2342 12 1 5.6802 4.3457 1.4219 13 6 6.8860 2.7289 2.1206 14 7 7.3973 3.4152 3.1190 15 14 7.3269 0.9267 1.9033 16 1 8.4561 0.8053 0.9464 17 1 7.7249 0.3530 3.2139 18 1 6.1505 0.1892 1.3769 19 6 6.0333 3.3507 -1.2456 20 7 7.5009 3.3305 -1.3044 21 6 3.4333 1.2856 0.0016 22 9 4.1712 0.1540 0.0016 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2136 2.3200 0.0055 27 1 0.9037 5.1744 1.0287 28 1 1.6511 5.6589 -0.5124 29 1 0.1576 4.6907 -0.5133 30 1 3.7915 4.6406 0.0016 31 1 8.0033 2.9856 3.7429 32 1 5.6274 2.8665 -2.1337 33 1 5.6855 4.3828 -1.2034 34 1 7.8448 2.3905 -1.4316 35 1 7.8421 3.9419 -2.0310 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260485811.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:56 Heat of formation + Delta-G solvation = -64.226999 kcal Electronic energy + Delta-G solvation = -19108.202727 eV Core-core repulsion = 16020.791270 eV Total energy + Delta-G solvation = -3087.411457 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -48.07095 -39.69453 -37.66411 -35.21049 -32.25008 -31.94444 -30.48873 -27.68595 -27.61449 -25.92500 -24.09906 -22.33021 -21.09987 -19.29191 -17.41623 -17.31828 -16.60886 -15.97795 -15.78433 -14.97014 -14.66968 -14.35529 -14.19910 -13.75695 -13.51480 -13.32639 -13.07526 -12.74068 -12.55687 -12.22668 -11.84850 -11.73957 -11.53046 -11.17666 -10.98657 -10.86507 -10.72381 -10.28501 -9.91268 -9.63024 -9.09531 -8.44872 -8.00418 -7.68032 -7.64343 -5.98486 -3.94926 1.68134 1.82471 3.39670 3.42781 3.48174 3.57114 4.09004 4.55018 4.81078 4.96069 5.16426 5.17830 5.19318 5.38423 5.43615 5.46278 5.54731 5.71215 5.79903 5.87722 5.96249 6.08963 6.16496 6.39529 6.45109 6.55693 6.72155 6.83168 6.95782 7.19287 7.31332 7.65500 7.74074 8.04509 8.22654 8.54621 9.02506 9.65282 11.14242 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.008454 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.906153 B = 3311.337365 C = 3813.326161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.315 6.315 3 C 0.091 3.909 4 C -0.208 4.208 5 C -0.065 4.065 6 C -0.108 4.108 7 C -0.116 4.116 8 C -0.026 4.026 9 C 0.041 3.959 10 H 0.052 0.948 11 C -0.478 4.478 12 H 0.075 0.925 13 C 0.084 3.916 14 N -0.896 5.896 15 Si 0.863 3.137 16 H -0.274 1.274 17 H -0.294 1.294 18 H -0.255 1.255 19 C 0.083 3.917 20 N -0.828 5.828 21 C 0.047 3.953 22 F -0.136 7.136 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.126 0.874 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.132 0.868 31 H 0.262 0.738 32 H -0.004 1.004 33 H 0.064 0.936 34 H 0.329 0.671 35 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.740 -1.868 -8.743 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.229 6.229 3 C 0.046 3.954 4 C -0.227 4.227 5 C -0.065 4.065 6 C -0.165 4.165 7 C -0.134 4.134 8 C -0.028 4.028 9 C 0.022 3.978 10 H 0.070 0.930 11 C -0.515 4.515 12 H 0.093 0.907 13 C -0.118 4.118 14 N -0.534 5.534 15 Si 0.690 3.310 16 H -0.199 1.199 17 H -0.220 1.220 18 H -0.179 1.179 19 C -0.048 4.048 20 N -0.355 5.355 21 C 0.027 3.973 22 F -0.115 7.115 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.144 0.856 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.150 0.850 31 H 0.072 0.928 32 H 0.014 0.986 33 H 0.082 0.918 34 H 0.140 0.860 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.539 -1.817 -7.823 14.890 hybrid contribution 0.015 -1.478 -0.796 1.679 sum -12.524 -3.296 -8.618 15.556 Atomic orbital electron populations 1.22989 0.78946 1.03434 1.01148 1.86107 1.20928 1.26560 1.89319 1.18929 0.90707 0.85022 1.00792 1.20682 0.99109 0.91125 1.11794 1.19677 0.94096 0.94229 0.98510 1.20733 0.98762 0.94743 1.02277 1.20688 0.91823 0.98484 1.02454 1.20593 0.99450 0.89792 0.92958 1.18377 0.85421 0.98003 0.96038 0.93040 1.20537 1.26413 1.01000 1.03548 0.90720 1.24924 0.94728 0.97420 0.94745 1.69884 1.31266 1.36275 1.15948 0.87071 0.79840 0.86708 0.77352 1.19939 1.22024 1.17921 1.21855 0.87396 1.00192 0.95333 1.58351 1.09736 1.13470 1.53960 1.16944 0.85425 0.83170 1.11720 1.91451 1.76521 1.48993 1.94505 0.92786 0.92903 0.88619 0.85593 0.91146 0.91375 0.92137 0.85020 0.92778 0.98587 0.91769 0.85993 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.33 16 2 O -0.32 -5.38 10.36 -19.60 -0.20 -5.59 16 3 C 0.09 1.69 6.69 -39.17 -0.26 1.43 16 4 C -0.21 -3.29 8.69 -39.45 -0.34 -3.63 16 5 C -0.06 -1.04 5.88 -104.63 -0.62 -1.66 16 6 C -0.11 -1.30 10.01 36.01 0.36 -0.94 16 7 C -0.12 -2.20 8.49 -39.56 -0.34 -2.54 16 8 C -0.03 -0.56 4.77 -104.58 -0.50 -1.06 16 9 C 0.04 0.97 2.12 -92.92 -0.20 0.77 16 10 H 0.05 1.28 3.70 -51.93 -0.19 1.09 16 11 C -0.48 -13.21 8.21 -34.44 -0.28 -13.49 16 12 H 0.07 2.22 7.96 -52.49 -0.42 1.80 16 13 C 0.08 2.45 5.47 -17.82 -0.10 2.36 16 14 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 15 Si 0.86 22.35 27.00 -169.99 -4.59 17.77 16 16 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 18 H -0.25 -6.57 5.64 56.52 0.32 -6.25 16 19 C 0.08 1.69 5.89 -3.83 -0.02 1.67 16 20 N -0.83 -16.24 9.29 -10.37 -0.10 -16.34 16 21 C 0.05 1.03 7.25 -39.30 -0.29 0.74 16 22 F -0.14 -3.18 14.97 2.25 0.03 -3.15 16 23 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 24 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 25 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.13 1.57 6.30 -52.48 -0.33 1.24 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 29 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 30 H 0.13 2.43 7.56 -52.49 -0.40 2.03 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 32 H 0.00 -0.07 8.14 -51.93 -0.42 -0.50 16 33 H 0.06 1.27 7.56 -51.93 -0.39 0.87 16 34 H 0.33 6.18 9.07 -39.29 -0.36 5.82 16 35 H 0.33 5.25 9.08 -39.29 -0.36 4.89 16 LS Contribution 294.20 15.07 4.43 4.43 Total: -1.00 -32.81 294.20 -5.80 -38.61 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.56 Total: 6.19 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -1.59 Total: -15.03 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.68 Total: -43.24 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.20 Total: -5.59 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.03 Total: -3.15 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.59 Total: 17.77 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.81 -5.80 -38.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485811.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.615 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds