Wall clock time and date at job start Mon Mar 30 2020 07:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35956 * 116.99886 * 2 1 4 4 C 1.38662 * 120.06478 * 0.02562 * 3 2 1 5 5 C 1.38173 * 119.97200 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.95691 * 179.97438 * 5 4 3 7 7 C 1.38269 * 120.09529 * 359.97438 * 5 4 3 8 8 C 1.38252 * 120.12381 * 359.97438 * 7 5 4 9 9 C 1.50700 * 119.98687 * 180.02562 * 8 7 5 10 10 H 1.08993 * 109.47604 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.46869 * 59.99676 * 9 8 7 12 12 H 1.07994 * 120.00152 * 302.07706 * 11 9 8 13 13 C 1.37879 * 120.00053 * 122.07759 * 11 9 8 14 14 N 1.31506 * 120.00005 * 172.99315 * 13 11 9 15 15 Si 1.86803 * 119.99655 * 352.99055 * 13 11 9 16 16 H 1.48504 * 109.47061 * 85.11613 * 15 13 11 17 17 H 1.48498 * 109.47042 * 205.11604 * 15 13 11 18 18 H 1.48498 * 109.47284 * 325.11544 * 15 13 11 19 19 C 1.53002 * 109.47092 * 300.00050 * 9 8 7 20 20 N 1.46893 * 109.47126 * 184.84622 * 19 9 8 21 21 C 1.38330 * 120.03347 * 0.02562 * 8 7 5 22 22 F 1.35099 * 120.05375 * 179.97438 * 21 8 7 23 23 H 1.09000 * 109.47352 * 299.99677 * 1 2 3 24 24 H 1.09000 * 109.47454 * 59.99834 * 1 2 3 25 25 H 1.09005 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.08005 * 120.00981 * 0.27777 * 4 3 2 27 27 H 1.09001 * 109.47166 * 89.99283 * 6 5 4 28 28 H 1.08995 * 109.47227 * 210.00173 * 6 5 4 29 29 H 1.09007 * 109.46725 * 329.99603 * 6 5 4 30 30 H 1.08001 * 119.93476 * 179.97438 * 7 5 4 31 31 H 0.97005 * 120.00161 * 179.97438 * 14 13 11 32 32 H 1.08993 * 109.46921 * 304.84845 * 19 9 8 33 33 H 1.09001 * 109.47330 * 64.84809 * 19 9 8 34 34 H 1.00904 * 111.00035 * 65.33949 * 20 19 9 35 35 H 1.00903 * 110.99988 * 189.29263 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9215 3.6053 0.0011 6 6 1.1018 4.8698 0.0011 7 6 3.3023 3.6777 0.0016 8 6 4.0579 2.5199 0.0021 9 6 5.5626 2.6025 0.0033 10 1 5.9817 1.5964 0.0041 11 6 6.0243 3.3394 1.2342 12 1 5.6802 4.3457 1.4219 13 6 6.8860 2.7289 2.1206 14 7 7.3973 3.4152 3.1190 15 14 7.3269 0.9267 1.9033 16 1 8.4561 0.8053 0.9464 17 1 7.7249 0.3530 3.2139 18 1 6.1505 0.1892 1.3769 19 6 6.0333 3.3507 -1.2456 20 7 7.5009 3.3305 -1.3044 21 6 3.4333 1.2856 0.0016 22 9 4.1712 0.1540 0.0016 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2136 2.3200 0.0055 27 1 0.9037 5.1744 1.0287 28 1 1.6511 5.6589 -0.5124 29 1 0.1576 4.6907 -0.5133 30 1 3.7915 4.6406 0.0016 31 1 8.0033 2.9856 3.7429 32 1 5.6274 2.8665 -2.1337 33 1 5.6855 4.3828 -1.2034 34 1 7.8448 2.3905 -1.4316 35 1 7.8421 3.9419 -2.0310 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260485811.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:55 Heat of formation + Delta-G solvation = -88.024283 kcal Electronic energy + Delta-G solvation = -19109.234655 eV Core-core repulsion = 16020.791270 eV Total energy + Delta-G solvation = -3088.443385 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.72365 -41.02034 -39.04941 -36.82930 -34.23222 -33.44145 -31.94396 -29.31511 -28.64896 -27.14200 -26.03668 -23.78668 -22.50582 -20.94369 -19.29742 -18.83683 -17.96010 -17.57179 -17.11482 -16.64595 -16.33007 -15.94313 -15.51130 -15.33192 -15.04397 -14.87730 -14.37428 -14.22824 -14.06430 -13.93715 -13.12339 -12.89140 -12.80521 -12.79257 -12.68925 -12.42964 -12.25030 -11.77335 -11.73101 -11.45805 -11.09441 -10.64248 -9.49294 -9.24445 -9.04664 -8.21854 -6.18936 0.24890 0.40581 1.33327 1.36437 1.48895 2.24638 2.39883 2.66078 3.16837 3.41738 3.76177 3.87542 4.06136 4.20479 4.31362 4.35360 4.38868 4.40948 4.55724 4.70156 4.77410 4.86052 4.90702 4.92345 5.00436 5.11446 5.20156 5.34493 5.53828 5.65051 5.72059 5.83795 6.32656 6.40936 6.47129 6.78753 6.85863 7.43845 8.94722 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020405 B = 0.008454 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.906153 B = 3311.337365 C = 3813.326161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.094 3.906 4 C -0.195 4.195 5 C -0.051 4.051 6 C -0.108 4.108 7 C -0.132 4.132 8 C -0.050 4.050 9 C 0.040 3.960 10 H 0.036 0.964 11 C -0.463 4.463 12 H 0.043 0.957 13 C 0.030 3.970 14 N -0.946 5.946 15 Si 0.916 3.084 16 H -0.260 1.260 17 H -0.298 1.298 18 H -0.257 1.257 19 C 0.092 3.908 20 N -0.846 5.846 21 C 0.005 3.995 22 F -0.156 7.156 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.119 0.881 26 H 0.170 0.830 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.261 0.739 32 H 0.017 0.983 33 H 0.066 0.934 34 H 0.333 0.667 35 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.636 -1.945 -10.200 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.048 3.952 4 C -0.213 4.213 5 C -0.052 4.052 6 C -0.164 4.164 7 C -0.150 4.150 8 C -0.052 4.052 9 C 0.021 3.979 10 H 0.054 0.946 11 C -0.501 4.501 12 H 0.061 0.939 13 C -0.167 4.167 14 N -0.586 5.586 15 Si 0.742 3.258 16 H -0.185 1.185 17 H -0.225 1.225 18 H -0.181 1.181 19 C -0.039 4.039 20 N -0.376 5.376 21 C -0.015 4.015 22 F -0.135 7.135 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.137 0.863 26 H 0.187 0.813 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.146 0.854 31 H 0.070 0.930 32 H 0.035 0.965 33 H 0.085 0.915 34 H 0.145 0.855 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.450 -1.897 -9.318 18.141 hybrid contribution 0.689 -1.411 -0.419 1.625 sum -14.761 -3.308 -9.737 17.990 Atomic orbital electron populations 1.23430 0.75703 1.05761 1.02799 1.86088 1.24250 1.26033 1.88960 1.19025 0.89855 0.86629 0.99711 1.21158 1.01064 0.89748 1.09337 1.20148 0.93159 0.96356 0.95511 1.20849 0.99480 0.92638 1.03443 1.20783 0.93410 0.97364 1.03490 1.20399 0.98308 0.91080 0.95409 1.18305 0.87283 0.96766 0.95591 0.94595 1.20707 1.25092 0.99827 1.04480 0.93865 1.25562 0.95448 1.00745 0.94933 1.70008 1.33269 1.37780 1.17585 0.86220 0.79759 0.82687 0.77111 1.18529 1.22468 1.18149 1.21659 0.87872 0.99930 0.94457 1.58304 1.09493 1.14379 1.55401 1.17310 0.87064 0.82545 1.14573 1.91378 1.77269 1.49902 1.94975 0.91381 0.90756 0.86277 0.81256 0.90190 0.90603 0.88977 0.85388 0.93016 0.96455 0.91545 0.85501 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -10.82 10.36 -93.06 -0.96 -11.78 16 3 C 0.09 3.32 6.69 22.53 0.15 3.47 16 4 C -0.19 -5.41 8.69 22.36 0.19 -5.22 16 5 C -0.05 -1.49 5.88 -19.87 -0.12 -1.61 16 6 C -0.11 -2.11 10.01 71.24 0.71 -1.40 16 7 C -0.13 -4.90 8.49 22.28 0.19 -4.71 16 8 C -0.05 -2.19 4.77 -19.84 -0.09 -2.28 16 9 C 0.04 1.91 2.12 -12.28 -0.03 1.89 16 10 H 0.04 1.82 3.70 -2.39 -0.01 1.81 16 11 C -0.46 -26.37 8.21 25.60 0.21 -26.16 16 12 H 0.04 2.67 7.96 -2.91 -0.02 2.65 16 13 C 0.03 1.81 5.47 84.66 0.46 2.27 16 14 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 15 Si 0.92 47.60 27.00 68.60 1.85 49.45 16 16 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.30 -15.48 7.11 99.48 0.71 -14.77 16 18 H -0.26 -13.34 5.64 99.48 0.56 -12.78 16 19 C 0.09 3.69 5.89 86.31 0.51 4.20 16 20 N -0.85 -32.76 9.29 -186.73 -1.74 -34.50 16 21 C 0.00 0.20 7.25 22.45 0.16 0.37 16 22 F -0.16 -7.45 14.97 44.97 0.67 -6.78 16 23 H 0.07 1.06 7.66 -2.39 -0.02 1.04 16 24 H 0.07 1.05 7.67 -2.39 -0.02 1.03 16 25 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.17 3.19 6.30 -2.91 -0.02 3.17 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 29 H 0.09 1.27 8.08 -2.38 -0.02 1.26 16 30 H 0.13 4.73 7.56 -2.91 -0.02 4.71 16 31 H 0.26 15.88 8.31 -92.70 -0.77 15.11 16 32 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 2.61 7.56 -2.39 -0.02 2.59 16 34 H 0.33 12.34 9.07 -89.69 -0.81 11.53 16 35 H 0.35 10.78 9.08 -89.69 -0.81 9.96 16 Total: -1.00 -74.26 294.20 2.94 -71.32 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -0.65 Total: 20.25 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 3.47 Total: -27.77 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -1.44 Total: -94.69 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.96 Total: -11.78 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 0.67 Total: -6.78 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.85 Total: 49.45 kcal Total: -74.26 2.94 -71.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485811.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.706 kcal (2) G-P(sol) polarization free energy of solvation -74.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds