Wall clock time and date at job start Mon Mar 30 2020 07:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35958 * 117.00020 * 2 1 4 4 C 1.38665 * 120.06196 * 0.02562 * 3 2 1 5 5 C 1.38179 * 119.97062 * 180.02562 * 4 3 2 6 6 C 1.50697 * 119.95296 * 179.97438 * 5 4 3 7 7 C 1.38267 * 120.09420 * 0.02562 * 5 4 3 8 8 C 1.38252 * 120.12406 * 0.02562 * 7 5 4 9 9 C 1.50707 * 119.98490 * 179.97438 * 8 7 5 10 10 H 1.09001 * 109.47111 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46848 * 300.01791 * 9 8 7 12 12 H 1.07998 * 120.00159 * 0.02562 * 11 9 8 13 13 C 1.37872 * 119.99850 * 179.97438 * 11 9 8 14 14 N 1.31509 * 120.00119 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00223 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47023 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47308 * 119.99902 * 15 13 11 18 18 H 1.48499 * 109.47567 * 240.00516 * 15 13 11 19 19 C 1.52998 * 109.46699 * 60.01828 * 9 8 7 20 20 N 1.46897 * 109.47373 * 65.00537 * 19 9 8 21 21 C 1.38333 * 120.03343 * 359.97438 * 8 7 5 22 22 F 1.35100 * 120.04929 * 180.02562 * 21 8 7 23 23 H 1.08994 * 109.46906 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46698 * 299.99398 * 1 2 3 25 25 H 1.08999 * 109.47406 * 59.99230 * 1 2 3 26 26 H 1.08001 * 120.01559 * 359.74935 * 4 3 2 27 27 H 1.09001 * 109.47056 * 90.00351 * 6 5 4 28 28 H 1.09001 * 109.47262 * 210.00319 * 6 5 4 29 29 H 1.09002 * 109.47084 * 330.00004 * 6 5 4 30 30 H 1.07996 * 119.93821 * 179.97438 * 7 5 4 31 31 H 0.97009 * 120.00322 * 179.97438 * 14 13 11 32 32 H 1.09010 * 109.46688 * 185.00057 * 19 9 8 33 33 H 1.08995 * 109.47640 * 304.99938 * 19 9 8 34 34 H 1.00898 * 111.00074 * 56.04284 * 20 19 9 35 35 H 1.00897 * 111.00105 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0000 6 6 1.1018 4.8698 0.0000 7 6 3.3024 3.6778 -0.0016 8 6 4.0579 2.5200 -0.0032 9 6 5.5627 2.6025 -0.0055 10 1 5.9818 1.5963 -0.0070 11 6 6.0233 3.3403 -1.2363 12 1 5.2989 3.7125 -1.9455 13 6 7.3695 3.5410 -1.4562 14 7 8.2516 3.0882 -0.5923 15 14 7.9406 4.4560 -2.9813 16 1 6.7604 4.8597 -3.7873 17 1 8.7006 5.6660 -2.5771 18 1 8.8145 3.5703 -3.7919 19 6 6.0343 3.3498 1.2435 20 7 5.6898 2.5701 2.4399 21 6 3.4333 1.2856 -0.0027 22 9 4.1713 0.1540 -0.0037 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.2137 2.3201 -0.0031 27 1 0.9046 5.1750 1.0277 28 1 1.6507 5.6587 -0.5143 29 1 0.1572 4.6904 -0.5134 30 1 3.7916 4.6406 -0.0024 31 1 9.1988 3.2291 -0.7472 32 1 7.1147 3.4875 1.1982 33 1 5.5457 4.3230 1.2909 34 1 6.0781 1.6402 2.3896 35 1 5.9914 3.0428 3.2787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260485813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:01 Heat of formation + Delta-G solvation = -70.664696 kcal Electronic energy + Delta-G solvation = -19045.721943 eV Core-core repulsion = 15958.031326 eV Total energy + Delta-G solvation = -3087.690617 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.88242 -39.55660 -37.52481 -35.08158 -32.18033 -31.80771 -30.22096 -27.58376 -27.31840 -25.81790 -23.94016 -22.28456 -21.02224 -19.33511 -17.29990 -16.77123 -16.48040 -15.88481 -15.62531 -14.80207 -14.54277 -14.34886 -14.11535 -13.62135 -13.51964 -13.23364 -12.88300 -12.55262 -12.16709 -11.99784 -11.68663 -11.51363 -11.39303 -11.05366 -11.03790 -10.97552 -10.48894 -10.29071 -9.97698 -9.62300 -9.27486 -8.51735 -7.82096 -7.55601 -7.48791 -6.09033 -4.16975 1.85650 1.99394 3.25106 3.33598 3.37945 3.52961 4.24509 4.40114 4.95846 5.07183 5.19577 5.25578 5.27615 5.43074 5.50573 5.65478 5.76528 5.85252 5.85761 5.98542 6.16317 6.22246 6.58786 6.67094 6.76325 6.98555 7.02137 7.17227 7.32849 7.50731 7.79850 7.82934 7.90612 8.06306 8.34891 8.40807 8.87286 9.47592 10.95237 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022078 B = 0.007092 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.909531 B = 3947.102688 C = 4184.418160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.316 6.316 3 C 0.087 3.913 4 C -0.209 4.209 5 C -0.069 4.069 6 C -0.107 4.107 7 C -0.116 4.116 8 C -0.004 4.004 9 C 0.079 3.921 10 H 0.042 0.958 11 C -0.508 4.508 12 H 0.062 0.938 13 C 0.063 3.937 14 N -0.889 5.889 15 Si 0.896 3.104 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.066 3.934 20 N -0.859 5.859 21 C 0.058 3.942 22 F -0.137 7.137 23 H 0.094 0.906 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.124 0.876 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.129 0.871 31 H 0.261 0.739 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.331 0.669 35 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.498 0.101 2.704 12.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.230 6.230 3 C 0.042 3.958 4 C -0.228 4.228 5 C -0.070 4.070 6 C -0.164 4.164 7 C -0.135 4.135 8 C -0.005 4.005 9 C 0.060 3.940 10 H 0.060 0.940 11 C -0.547 4.547 12 H 0.080 0.920 13 C -0.139 4.139 14 N -0.528 5.528 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.064 4.064 20 N -0.386 5.386 21 C 0.038 3.962 22 F -0.115 7.115 23 H 0.113 0.887 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.141 0.859 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.142 0.858 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.956 -0.028 2.477 13.191 hybrid contribution 1.275 0.312 -0.634 1.458 sum -11.681 0.284 1.842 11.828 Atomic orbital electron populations 1.22963 0.79167 1.03277 1.01038 1.86101 1.20739 1.26676 1.89454 1.18917 0.90781 0.84874 1.01250 1.20631 0.98905 0.91199 1.12081 1.19633 0.94123 0.94101 0.99117 1.20714 0.98834 0.94975 1.01880 1.20686 0.91709 0.98626 1.02452 1.20337 0.99243 0.89484 0.91408 1.17887 0.83961 0.98138 0.93985 0.93972 1.21113 0.91902 1.36083 1.05590 0.91957 1.24975 0.96659 0.95580 0.96672 1.69879 1.01537 1.45977 1.35414 0.86462 0.78804 0.79437 0.82940 1.19593 1.20943 1.20916 1.22014 1.01274 0.95077 0.88000 1.59021 1.68030 1.06615 1.04942 1.16888 0.85168 0.83194 1.10909 1.91420 1.76655 1.48985 1.94475 0.88733 0.92953 0.92983 0.85866 0.91499 0.91434 0.92219 0.85297 0.92858 0.91270 0.93627 0.85814 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.56 10.36 -19.61 -0.20 -5.76 16 3 C 0.09 1.68 6.69 -39.18 -0.26 1.42 16 4 C -0.21 -3.48 8.69 -39.45 -0.34 -3.83 16 5 C -0.07 -1.18 5.88 -104.63 -0.62 -1.79 16 6 C -0.11 -1.37 10.01 36.00 0.36 -1.01 16 7 C -0.12 -2.34 8.30 -39.57 -0.33 -2.66 16 8 C 0.00 -0.08 4.47 -104.58 -0.47 -0.55 16 9 C 0.08 1.99 2.07 -92.92 -0.19 1.79 16 10 H 0.04 1.18 7.12 -51.93 -0.37 0.81 16 11 C -0.51 -13.66 8.24 -34.44 -0.28 -13.94 16 12 H 0.06 1.67 7.60 -52.49 -0.40 1.27 16 13 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 14 N -0.89 -24.67 11.29 55.43 0.63 -24.05 16 15 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.07 1.54 5.91 -3.83 -0.02 1.52 16 20 N -0.86 -17.38 9.34 -10.37 -0.10 -17.47 16 21 C 0.06 1.30 7.25 -39.30 -0.29 1.02 16 22 F -0.14 -3.24 16.04 2.25 0.04 -3.21 16 23 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 25 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 26 H 0.12 1.64 6.30 -52.49 -0.33 1.30 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 29 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.13 2.55 7.54 -52.49 -0.40 2.15 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.07 1.78 5.95 -51.92 -0.31 1.47 16 33 H 0.05 1.04 7.22 -51.93 -0.38 0.67 16 34 H 0.33 6.72 8.99 -39.29 -0.35 6.37 16 35 H 0.32 5.62 9.08 -39.29 -0.36 5.26 16 LS Contribution 296.41 15.07 4.47 4.47 Total: -1.00 -29.61 296.41 -6.24 -35.85 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -4.50 Total: 9.41 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -1.54 Total: -15.10 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.53 Total: -41.52 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.20 Total: -5.76 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.04 Total: -3.21 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.61 -6.24 -35.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.812 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds