Wall clock time and date at job start Mon Mar 30 2020 07:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35958 * 117.00020 * 2 1 4 4 C 1.38665 * 120.06196 * 0.02562 * 3 2 1 5 5 C 1.38179 * 119.97062 * 180.02562 * 4 3 2 6 6 C 1.50697 * 119.95296 * 179.97438 * 5 4 3 7 7 C 1.38267 * 120.09420 * 0.02562 * 5 4 3 8 8 C 1.38252 * 120.12406 * 0.02562 * 7 5 4 9 9 C 1.50707 * 119.98490 * 179.97438 * 8 7 5 10 10 H 1.09001 * 109.47111 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46848 * 300.01791 * 9 8 7 12 12 H 1.07998 * 120.00159 * 0.02562 * 11 9 8 13 13 C 1.37872 * 119.99850 * 179.97438 * 11 9 8 14 14 N 1.31509 * 120.00119 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00223 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47023 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47308 * 119.99902 * 15 13 11 18 18 H 1.48499 * 109.47567 * 240.00516 * 15 13 11 19 19 C 1.52998 * 109.46699 * 60.01828 * 9 8 7 20 20 N 1.46897 * 109.47373 * 65.00537 * 19 9 8 21 21 C 1.38333 * 120.03343 * 359.97438 * 8 7 5 22 22 F 1.35100 * 120.04929 * 180.02562 * 21 8 7 23 23 H 1.08994 * 109.46906 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46698 * 299.99398 * 1 2 3 25 25 H 1.08999 * 109.47406 * 59.99230 * 1 2 3 26 26 H 1.08001 * 120.01559 * 359.74935 * 4 3 2 27 27 H 1.09001 * 109.47056 * 90.00351 * 6 5 4 28 28 H 1.09001 * 109.47262 * 210.00319 * 6 5 4 29 29 H 1.09002 * 109.47084 * 330.00004 * 6 5 4 30 30 H 1.07996 * 119.93821 * 179.97438 * 7 5 4 31 31 H 0.97009 * 120.00322 * 179.97438 * 14 13 11 32 32 H 1.09010 * 109.46688 * 185.00057 * 19 9 8 33 33 H 1.08995 * 109.47640 * 304.99938 * 19 9 8 34 34 H 1.00898 * 111.00074 * 56.04284 * 20 19 9 35 35 H 1.00897 * 111.00105 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0000 6 6 1.1018 4.8698 0.0000 7 6 3.3024 3.6778 -0.0016 8 6 4.0579 2.5200 -0.0032 9 6 5.5627 2.6025 -0.0055 10 1 5.9818 1.5963 -0.0070 11 6 6.0233 3.3403 -1.2363 12 1 5.2989 3.7125 -1.9455 13 6 7.3695 3.5410 -1.4562 14 7 8.2516 3.0882 -0.5923 15 14 7.9406 4.4560 -2.9813 16 1 6.7604 4.8597 -3.7873 17 1 8.7006 5.6660 -2.5771 18 1 8.8145 3.5703 -3.7919 19 6 6.0343 3.3498 1.2435 20 7 5.6898 2.5701 2.4399 21 6 3.4333 1.2856 -0.0027 22 9 4.1713 0.1540 -0.0037 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.2137 2.3201 -0.0031 27 1 0.9046 5.1750 1.0277 28 1 1.6507 5.6587 -0.5143 29 1 0.1572 4.6904 -0.5134 30 1 3.7916 4.6406 -0.0024 31 1 9.1988 3.2291 -0.7472 32 1 7.1147 3.4875 1.1982 33 1 5.5457 4.3230 1.2909 34 1 6.0781 1.6402 2.3896 35 1 5.9914 3.0428 3.2787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260485813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:00 Heat of formation + Delta-G solvation = -90.611676 kcal Electronic energy + Delta-G solvation = -19046.586908 eV Core-core repulsion = 15958.031326 eV Total energy + Delta-G solvation = -3088.555583 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.59489 -40.94127 -38.97897 -36.80889 -34.15473 -33.25056 -31.74793 -29.09118 -28.60132 -27.09307 -25.90611 -23.87233 -22.49448 -21.01825 -18.81684 -18.61753 -17.89781 -17.52648 -16.97902 -16.71404 -16.28873 -15.87594 -15.45122 -15.30287 -14.97681 -14.54139 -14.32098 -13.98133 -13.89416 -13.61466 -13.16574 -12.89229 -12.76057 -12.73578 -12.65968 -12.29135 -12.16525 -11.93140 -11.63705 -11.38188 -11.18638 -10.57255 -9.43719 -9.27277 -8.95634 -8.13778 -6.29912 0.36569 0.51130 1.39649 1.41923 1.53672 2.30985 2.40911 2.78934 3.11921 3.51532 3.88011 3.99826 4.10542 4.28530 4.41174 4.43104 4.44038 4.54010 4.73212 4.80868 4.92393 4.93707 5.03215 5.07992 5.16513 5.33220 5.46461 5.49258 5.67870 5.78149 5.91742 5.98073 6.14477 6.47192 6.48534 6.69749 6.86703 7.37707 8.89015 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.022078 B = 0.007092 C = 0.006690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.909531 B = 3947.102688 C = 4184.418160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.092 3.908 4 C -0.198 4.198 5 C -0.054 4.054 6 C -0.106 4.106 7 C -0.135 4.135 8 C -0.025 4.025 9 C 0.083 3.917 10 H -0.002 1.002 11 C -0.524 4.524 12 H 0.057 0.943 13 C 0.016 3.984 14 N -0.916 5.916 15 Si 0.959 3.041 16 H -0.266 1.266 17 H -0.274 1.274 18 H -0.283 1.283 19 C 0.082 3.918 20 N -0.850 5.850 21 C 0.012 3.988 22 F -0.158 7.158 23 H 0.119 0.881 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.168 0.832 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.263 0.737 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.330 0.670 35 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.456 1.368 2.471 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.047 3.953 4 C -0.217 4.217 5 C -0.055 4.055 6 C -0.162 4.162 7 C -0.154 4.154 8 C -0.026 4.026 9 C 0.064 3.936 10 H 0.016 0.984 11 C -0.563 4.563 12 H 0.075 0.925 13 C -0.183 4.183 14 N -0.555 5.555 15 Si 0.784 3.216 16 H -0.190 1.190 17 H -0.200 1.200 18 H -0.209 1.209 19 C -0.048 4.048 20 N -0.378 5.378 21 C -0.008 4.008 22 F -0.137 7.137 23 H 0.137 0.863 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.186 0.814 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.142 0.858 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.141 0.859 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.934 1.239 2.260 16.141 hybrid contribution 2.050 -0.148 -0.525 2.122 sum -13.884 1.091 1.735 14.034 Atomic orbital electron populations 1.23409 0.75850 1.05675 1.02685 1.86082 1.24135 1.26101 1.89073 1.18999 0.89830 0.86538 0.99982 1.21100 1.00868 0.89803 1.09901 1.20113 0.93097 0.96334 0.95935 1.20824 0.99247 0.92582 1.03560 1.20741 0.93348 0.97343 1.03921 1.20149 0.97847 0.90893 0.93723 1.17662 0.86220 0.95429 0.94283 0.98400 1.21362 0.92208 1.36329 1.06370 0.92502 1.25751 0.96725 0.96352 0.99472 1.70011 1.01714 1.46838 1.36921 0.85478 0.78326 0.78331 0.79420 1.18985 1.19975 1.20932 1.21682 0.99265 0.95235 0.88646 1.58915 1.67794 1.06359 1.04739 1.17269 0.86876 0.82550 1.14101 1.91344 1.77474 1.49942 1.94981 0.86277 0.91124 0.91253 0.81450 0.89592 0.91108 0.89335 0.85765 0.92799 0.94048 0.93366 0.85944 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.46 16 2 O -0.34 -11.42 10.36 -93.07 -0.96 -12.39 16 3 C 0.09 3.46 6.69 22.53 0.15 3.62 16 4 C -0.20 -5.92 8.69 22.36 0.19 -5.73 16 5 C -0.05 -1.70 5.88 -19.87 -0.12 -1.81 16 6 C -0.11 -2.22 10.01 71.23 0.71 -1.51 16 7 C -0.14 -5.38 8.30 22.28 0.18 -5.19 16 8 C -0.03 -1.18 4.47 -19.84 -0.09 -1.27 16 9 C 0.08 4.39 2.07 -12.28 -0.03 4.36 16 10 H 0.00 -0.13 7.12 -2.39 -0.02 -0.15 16 11 C -0.52 -29.23 8.24 25.60 0.21 -29.02 16 12 H 0.06 3.14 7.60 -2.91 -0.02 3.12 16 13 C 0.02 0.88 5.29 84.65 0.45 1.33 16 14 N -0.92 -52.59 11.29 21.44 0.24 -52.35 16 15 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 C 0.08 3.98 5.91 86.30 0.51 4.49 16 20 N -0.85 -35.34 9.34 -186.72 -1.74 -37.09 16 21 C 0.01 0.53 7.25 22.45 0.16 0.70 16 22 F -0.16 -7.99 16.04 44.97 0.72 -7.27 16 23 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.07 1.14 7.67 -2.38 -0.02 1.12 16 25 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 26 H 0.17 3.46 6.30 -2.91 -0.02 3.44 16 27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 29 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 30 H 0.12 4.93 7.54 -2.91 -0.02 4.91 16 31 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 32 H 0.04 2.23 5.95 -2.38 -0.01 2.22 16 33 H 0.05 2.27 7.22 -2.39 -0.02 2.25 16 34 H 0.33 14.03 8.99 -89.70 -0.81 13.22 16 35 H 0.34 11.90 9.08 -89.70 -0.81 11.09 16 Total: -1.00 -67.74 296.41 3.24 -64.50 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -0.50 Total: 27.68 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 3.46 Total: -28.58 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -1.50 Total: -89.44 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.96 Total: -12.39 kcal Atomic # 9 Polarization: -7.99 SS G_CDS: 0.72 Total: -7.27 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -67.74 3.24 -64.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260485813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.111 kcal (2) G-P(sol) polarization free energy of solvation -67.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds