Wall clock time and date at job start Mon Mar 30 2020 07:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35958 * 117.00058 * 2 1 4 4 C 1.38665 * 120.06160 * 0.02562 * 3 2 1 5 5 C 1.38179 * 119.97062 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.95279 * 180.02562 * 5 4 3 7 7 C 1.38258 * 120.09218 * 0.02562 * 5 4 3 8 8 C 1.38252 * 120.13022 * 0.02562 * 7 5 4 9 9 C 1.50706 * 119.98904 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.47272 * 219.97711 * 9 8 7 11 11 N 1.46897 * 109.46876 * 339.97654 * 9 8 7 12 12 C 1.52995 * 109.46949 * 99.97327 * 9 8 7 13 13 C 1.50707 * 109.47117 * 175.00312 * 12 9 8 14 14 H 1.08002 * 119.99519 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00316 * 180.02562 * 13 12 9 16 16 N 1.31514 * 119.99861 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00131 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46754 * 90.00038 * 17 15 13 19 19 H 1.48505 * 109.47286 * 210.00002 * 17 15 13 20 20 H 1.48502 * 109.47481 * 330.00215 * 17 15 13 21 21 C 1.38333 * 120.02929 * 359.97438 * 8 7 5 22 22 F 1.35100 * 120.04929 * 180.02562 * 21 8 7 23 23 H 1.09004 * 109.46840 * 60.00228 * 1 2 3 24 24 H 1.08994 * 109.46940 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47042 * 299.99953 * 1 2 3 26 26 H 1.08001 * 120.01559 * 359.70553 * 4 3 2 27 27 H 1.09001 * 109.47278 * 90.00348 * 6 5 4 28 28 H 1.08996 * 109.46947 * 210.00084 * 6 5 4 29 29 H 1.09003 * 109.47264 * 330.00041 * 6 5 4 30 30 H 1.08005 * 119.93911 * 179.97438 * 7 5 4 31 31 H 1.00904 * 111.00367 * 60.00004 * 11 9 8 32 32 H 1.00897 * 111.00033 * 183.95419 * 11 9 8 33 33 H 1.08999 * 109.47539 * 295.00232 * 12 9 8 34 34 H 1.08998 * 109.47457 * 55.00632 * 12 9 8 35 35 H 0.97005 * 120.00078 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0011 6 6 1.1018 4.8698 0.0022 7 6 3.3023 3.6777 0.0005 8 6 4.0579 2.5200 -0.0011 9 6 5.5627 2.6025 -0.0011 10 1 5.9686 1.8370 -0.6624 11 7 5.9802 3.9293 -0.4735 12 6 6.0857 2.3791 1.4193 13 6 7.5921 2.3395 1.3995 14 1 8.1232 2.4618 0.4671 15 6 8.2921 2.1470 2.5716 16 7 7.6453 1.9975 3.7068 17 14 10.1592 2.0971 2.5469 18 1 10.6936 3.4685 2.7440 19 1 10.6454 1.2148 3.6380 20 1 10.6231 1.5684 1.2390 21 6 3.4334 1.2856 -0.0016 22 9 4.1714 0.1540 -0.0027 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2137 2.3201 -0.0039 27 1 0.9047 5.1741 1.0302 28 1 1.6508 5.6591 -0.5113 29 1 0.1572 4.6909 -0.5113 30 1 3.7916 4.6406 0.0005 31 1 5.6163 4.6569 0.1234 32 1 6.9850 3.9884 -0.5440 33 1 5.7521 3.1941 2.0617 34 1 5.7024 1.4337 1.8031 35 1 8.1378 1.8617 4.5314 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260532480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:50 Heat of formation + Delta-G solvation = -71.702202 kcal Electronic energy + Delta-G solvation = -18681.146672 eV Core-core repulsion = 15593.411065 eV Total energy + Delta-G solvation = -3087.735607 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.20425 -39.88891 -37.89781 -35.41515 -32.58703 -31.77317 -29.54127 -28.11551 -27.80069 -26.15265 -24.54332 -22.10825 -21.46915 -19.55024 -17.65240 -16.94751 -16.68778 -16.39147 -15.90225 -14.77519 -14.73098 -14.52342 -14.40293 -13.95012 -13.49996 -13.30767 -12.94687 -12.81012 -12.59204 -12.10341 -11.89831 -11.82104 -11.60216 -11.27254 -11.04326 -11.00288 -10.65953 -10.55357 -10.25455 -9.89866 -9.17323 -8.48525 -8.34238 -7.85040 -7.72021 -6.05919 -4.10538 1.44473 1.58860 3.26407 3.28640 3.35668 3.39046 3.84693 4.40791 4.61207 4.79901 5.05764 5.06230 5.09929 5.26691 5.27340 5.35896 5.40275 5.50881 5.63612 5.68788 5.81992 5.91431 6.21935 6.28119 6.44444 6.66110 6.67832 6.79231 6.97170 7.47498 7.50260 7.56752 7.86743 8.00662 8.18708 8.31983 8.95423 9.54312 11.04952 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.026864 B = 0.005786 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.020625 B = 4837.922793 C = 5406.043260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.093 3.907 4 C -0.199 4.199 5 C -0.064 4.064 6 C -0.110 4.110 7 C -0.117 4.117 8 C -0.045 4.045 9 C 0.126 3.874 10 H 0.084 0.916 11 N -0.838 5.838 12 C 0.002 3.998 13 C -0.525 4.525 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.067 3.933 22 F -0.128 7.128 23 H 0.053 0.947 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.130 0.870 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.135 0.865 31 H 0.330 0.670 32 H 0.349 0.651 33 H 0.018 0.982 34 H 0.023 0.977 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.750 2.685 -7.132 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.047 3.953 4 C -0.217 4.217 5 C -0.065 4.065 6 C -0.166 4.166 7 C -0.135 4.135 8 C -0.047 4.047 9 C 0.015 3.985 10 H 0.102 0.898 11 N -0.367 5.367 12 C -0.036 4.036 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.047 3.953 22 F -0.107 7.107 23 H 0.072 0.928 24 H 0.116 0.884 25 H 0.073 0.927 26 H 0.148 0.852 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.153 0.847 31 H 0.141 0.859 32 H 0.163 0.837 33 H 0.036 0.964 34 H 0.041 0.959 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.013 2.230 -7.615 16.981 hybrid contribution 1.347 -0.191 1.172 1.795 sum -13.667 2.039 -6.443 15.246 Atomic orbital electron populations 1.23029 0.78648 1.03733 1.01188 1.86132 1.21134 1.26170 1.89107 1.18886 0.90660 0.85248 1.00504 1.20795 0.99439 0.91087 1.10423 1.19675 0.93958 0.94426 0.98426 1.20750 0.98958 0.94606 1.02332 1.20665 0.92082 0.98333 1.02432 1.20106 0.97835 0.90553 0.96200 1.20456 0.86869 0.92047 0.99129 0.89805 1.59269 1.17676 1.03779 1.56012 1.19774 0.96172 0.98025 0.89653 1.21120 0.91140 1.50384 0.93641 0.92426 1.25011 0.98583 0.95031 0.95557 1.69977 1.35568 1.48911 0.98454 0.86563 0.85527 0.77908 0.77832 1.20649 1.21202 1.19758 1.16764 0.85599 0.82966 1.10006 1.91495 1.76421 1.48601 1.94146 0.92794 0.88365 0.92690 0.85232 0.91089 0.91196 0.91878 0.84686 0.85852 0.83668 0.96366 0.95866 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.96 10.36 -19.61 -0.20 -5.16 16 3 C 0.09 1.59 6.69 -39.18 -0.26 1.33 16 4 C -0.20 -2.82 8.69 -39.45 -0.34 -3.16 16 5 C -0.06 -0.91 5.88 -104.64 -0.62 -1.53 16 6 C -0.11 -1.12 10.01 36.00 0.36 -0.76 16 7 C -0.12 -1.92 8.90 -39.57 -0.35 -2.28 16 8 C -0.05 -0.89 5.09 -104.58 -0.53 -1.42 16 9 C 0.13 2.71 2.70 -68.87 -0.19 2.52 16 10 H 0.08 1.90 7.94 -51.93 -0.41 1.49 16 11 N -0.84 -15.58 8.67 -5.66 -0.05 -15.63 16 12 C 0.00 0.06 4.60 -27.88 -0.13 -0.07 16 13 C -0.52 -14.48 8.55 -34.44 -0.29 -14.77 16 14 H 0.06 1.52 7.14 -52.49 -0.37 1.15 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.07 1.34 7.25 -39.30 -0.28 1.06 16 22 F -0.13 -2.83 16.51 2.25 0.04 -2.79 16 23 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 24 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 26 H 0.13 1.41 6.30 -52.49 -0.33 1.08 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.14 2.04 6.24 -52.48 -0.33 1.71 16 31 H 0.33 5.72 7.29 -39.29 -0.29 5.43 16 32 H 0.35 6.60 7.90 -39.29 -0.31 6.29 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 298.51 15.07 4.50 4.50 Total: -1.00 -31.67 298.51 -6.25 -37.92 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.50 Total: 6.91 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -1.74 Total: -16.19 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.69 Total: -41.67 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.20 Total: -5.16 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.67 -6.25 -37.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260532480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.785 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds