Wall clock time and date at job start Mon Mar 30 2020 07:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47020 * 2 1 4 4 C 1.38298 * 119.93617 * 90.00352 * 3 2 1 5 5 C 1.38288 * 120.03089 * 180.02562 * 4 3 2 6 6 F 1.35096 * 120.04969 * 180.02562 * 5 4 3 7 7 C 1.38951 * 119.90510 * 359.97438 * 5 4 3 8 8 O 1.35956 * 120.06380 * 179.97438 * 7 5 4 9 9 C 1.42902 * 117.00156 * 270.02936 * 8 7 5 10 10 C 1.38618 * 119.87306 * 0.02562 * 7 5 4 11 11 C 1.50707 * 120.01654 * 179.97438 * 10 7 5 12 12 H 1.08997 * 109.46649 * 39.99862 * 11 10 7 13 13 N 1.46895 * 109.47234 * 160.00284 * 11 10 7 14 14 C 1.50695 * 109.47014 * 280.00319 * 11 10 7 15 15 H 1.08004 * 120.00546 * 0.27454 * 14 11 10 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99913 * 179.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 11 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 C 1.38218 * 119.93769 * 270.27716 * 3 2 1 23 23 H 1.08996 * 109.47328 * 299.99643 * 1 2 3 24 24 H 1.09007 * 109.47206 * 60.00037 * 1 2 3 25 25 H 1.09008 * 109.47155 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46963 * 240.00131 * 2 1 3 27 27 H 1.08997 * 109.47375 * 119.99931 * 2 1 3 28 28 H 1.08000 * 119.98648 * 0.02562 * 4 3 2 29 29 H 1.09004 * 109.47127 * 180.02562 * 9 8 7 30 30 H 1.09006 * 109.46955 * 299.99610 * 9 8 7 31 31 H 1.08991 * 109.47054 * 59.99718 * 9 8 7 32 32 H 1.00907 * 110.99817 * 296.04438 * 13 11 10 33 33 H 1.00895 * 111.00026 * 59.99561 * 13 11 10 34 34 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 35 35 H 1.07998 * 119.95461 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0715 1.1985 5 6 2.7228 3.3755 1.2008 6 9 2.9482 4.0113 2.3712 7 6 2.9543 4.0305 -0.0026 8 8 3.4065 5.3127 -0.0041 9 6 2.4215 6.3480 -0.0047 10 6 2.7223 3.3746 -1.2015 11 6 2.9718 4.0822 -2.5086 12 1 3.8822 4.6765 -2.4319 13 7 3.1234 3.0901 -3.5813 14 6 1.8069 4.9857 -2.8209 15 1 0.9716 5.0453 -2.1389 16 6 1.8102 5.7409 -3.9745 17 7 0.7933 6.5291 -4.2474 18 14 3.2584 5.6435 -5.1504 19 1 3.0142 4.5717 -6.1487 20 1 3.4167 6.9443 -5.8493 21 1 4.4954 5.3375 -4.3879 22 6 2.2567 2.0731 -1.1977 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.0824 1.5610 2.1330 29 1 2.9156 7.3196 -0.0064 30 1 1.7984 6.2562 -0.8944 31 1 1.7992 6.2579 0.8856 32 1 3.9369 2.5131 -3.4278 33 1 2.2919 2.5260 -3.6723 34 1 0.7955 7.0601 -5.0592 35 1 2.0723 1.5637 -2.1320 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260590883.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:17 Heat of formation + Delta-G solvation = -65.173268 kcal Electronic energy + Delta-G solvation = -19228.526743 eV Core-core repulsion = 16141.074252 eV Total energy + Delta-G solvation = -3087.452491 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.51574 -39.64684 -37.22046 -35.20120 -33.07880 -31.92887 -29.40112 -28.80164 -26.87190 -25.86550 -23.46332 -23.16132 -21.06287 -19.71066 -17.50502 -16.93582 -16.65554 -16.28532 -15.54629 -14.83307 -14.60754 -14.40932 -14.19428 -13.96605 -13.78154 -13.57695 -13.27301 -12.74620 -12.38618 -12.29025 -11.78688 -11.54352 -11.40402 -11.11078 -10.95996 -10.85206 -10.69593 -10.24896 -9.86192 -9.50463 -9.19322 -8.58520 -8.21545 -8.01263 -7.79282 -6.09520 -4.19998 1.41686 1.58819 3.54914 3.57889 3.70938 3.72660 4.38683 4.57361 4.59896 4.86107 4.98947 5.17167 5.29896 5.38469 5.47168 5.54744 5.65669 5.82331 5.87387 5.93063 5.96578 6.03599 6.17975 6.24162 6.35326 6.39167 6.60108 6.72628 6.76536 6.99806 7.08450 7.53430 8.04085 8.06134 8.22485 8.57037 8.85000 9.52849 10.98607 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.020436 B = 0.008502 C = 0.006869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.782970 B = 3292.510345 C = 4075.476288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.064 4.064 4 C -0.164 4.164 5 C 0.076 3.924 6 F -0.141 7.141 7 C 0.067 3.933 8 O -0.328 6.328 9 C 0.024 3.976 10 C -0.055 4.055 11 C 0.217 3.783 12 H 0.063 0.937 13 N -0.840 5.840 14 C -0.515 4.515 15 H 0.072 0.928 16 C 0.085 3.915 17 N -0.896 5.896 18 Si 0.936 3.064 19 H -0.280 1.280 20 H -0.318 1.318 21 H -0.273 1.273 22 C -0.126 4.126 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.028 0.972 32 H 0.313 0.687 33 H 0.335 0.665 34 H 0.265 0.735 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.905 -10.198 8.196 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.064 4.064 4 C -0.183 4.183 5 C 0.057 3.943 6 F -0.120 7.120 7 C 0.021 3.979 8 O -0.244 6.244 9 C -0.070 4.070 10 C -0.058 4.058 11 C 0.108 3.892 12 H 0.081 0.919 13 N -0.370 5.370 14 C -0.553 4.553 15 H 0.090 0.910 16 C -0.120 4.120 17 N -0.532 5.532 18 Si 0.768 3.232 19 H -0.206 1.206 20 H -0.248 1.248 21 H -0.198 1.198 22 C -0.145 4.145 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.146 0.854 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.047 0.953 32 H 0.125 0.875 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.085 -9.349 7.623 12.242 hybrid contribution 0.269 -0.526 0.477 0.759 sum 2.354 -9.876 8.100 12.987 Atomic orbital electron populations 1.21759 0.94644 1.01446 1.02662 1.20494 0.96277 0.92284 1.02646 1.19615 0.98418 0.96136 0.92217 1.20675 1.05436 0.93282 0.98946 1.18149 1.03071 0.92307 0.80800 1.91436 1.92532 1.82148 1.45853 1.18496 1.02071 0.86834 0.90454 1.85919 1.33182 1.11140 1.94187 1.23326 0.92601 0.88604 1.02440 1.21536 0.92840 0.93890 0.97506 1.18689 0.99373 0.90159 0.80981 0.91912 1.59341 1.07140 1.21304 1.49221 1.20587 1.03674 1.23246 1.07746 0.90997 1.24987 0.96317 0.93233 0.97463 1.69943 1.30895 1.26446 1.25950 0.85860 0.82665 0.74448 0.80214 1.20639 1.24800 1.19812 1.20822 1.01550 0.94515 0.97595 0.92615 0.92078 0.92572 0.90876 0.91237 0.85358 0.89700 0.88820 0.95342 0.87500 0.85037 0.92565 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.89 37.15 0.37 -1.22 16 2 C -0.08 -0.89 6.06 -27.89 -0.17 -1.06 16 3 C -0.06 -0.94 5.13 -104.61 -0.54 -1.48 16 4 C -0.16 -2.55 9.67 -39.54 -0.38 -2.94 16 5 C 0.08 1.41 7.31 -39.30 -0.29 1.12 16 6 F -0.14 -2.59 17.11 2.25 0.04 -2.55 16 7 C 0.07 1.37 5.69 -39.18 -0.22 1.14 16 8 O -0.33 -7.01 9.52 -19.60 -0.19 -7.20 16 9 C 0.02 0.47 11.02 101.05 1.11 1.59 16 10 C -0.05 -1.10 5.02 -104.48 -0.53 -1.63 16 11 C 0.22 4.88 2.00 -70.02 -0.14 4.74 16 12 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 13 N -0.84 -16.76 6.25 -6.65 -0.04 -16.80 16 14 C -0.51 -13.49 7.30 -34.44 -0.25 -13.75 16 15 H 0.07 2.06 7.10 -52.48 -0.37 1.69 16 16 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 17 N -0.90 -26.29 13.96 55.43 0.77 -25.51 16 18 Si 0.94 23.28 26.03 -169.99 -4.42 18.85 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 20 H -0.32 -8.05 7.11 56.52 0.40 -7.65 16 21 H -0.27 -6.69 6.54 56.52 0.37 -6.32 16 22 C -0.13 -2.13 8.90 -39.59 -0.35 -2.48 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 27 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.09 2.12 5.00 -51.93 -0.26 1.86 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.31 5.38 9.06 -39.29 -0.36 5.02 16 33 H 0.33 6.27 7.28 -39.29 -0.29 5.98 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.13 1.93 6.25 -52.49 -0.33 1.60 16 LS Contribution 291.93 15.07 4.40 4.40 Total: -1.00 -29.72 291.93 -5.43 -35.15 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -4.50 Total: 7.37 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -1.48 Total: -13.70 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.73 Total: -42.31 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.19 Total: -7.20 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -4.42 Total: 18.85 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.72 -5.43 -35.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260590883.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.025 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds