Wall clock time and date at job start Mon Mar 30 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46833 * 2 1 4 4 C 1.50704 * 109.46955 * 240.00223 * 2 1 3 5 5 H 1.07993 * 119.99933 * 239.99632 * 4 2 1 6 6 C 1.37878 * 119.99691 * 59.99819 * 4 2 1 7 7 N 1.31516 * 120.00505 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99749 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47093 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47148 * 119.99763 * 8 6 4 11 11 H 1.48500 * 109.47412 * 240.00039 * 8 6 4 12 12 C 1.50696 * 109.47833 * 120.00277 * 2 1 3 13 13 C 1.38290 * 119.92144 * 240.00229 * 12 2 1 14 14 C 1.38119 * 120.09283 * 179.97438 * 13 12 2 15 15 C 1.38880 * 119.93766 * 0.02562 * 14 13 12 16 16 N 1.39757 * 120.07631 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99854 * 60.00223 * 16 15 14 18 18 C 1.46898 * 110.99801 * 296.04510 * 16 15 14 19 19 C 1.38982 * 119.84514 * 0.27483 * 15 14 13 20 20 Cl 1.73604 * 120.04971 * 179.70311 * 19 15 14 21 21 C 1.38215 * 119.90309 * 359.42722 * 19 15 14 22 22 H 1.08994 * 109.47474 * 59.99873 * 1 2 3 23 23 H 1.08996 * 109.47015 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46651 * 299.99654 * 1 2 3 25 25 H 0.96996 * 120.00352 * 179.97438 * 7 6 4 26 26 H 1.07998 * 119.95653 * 359.97057 * 13 12 2 27 27 H 1.08004 * 120.03154 * 180.02562 * 14 13 12 28 28 H 1.09002 * 109.47401 * 59.99789 * 17 16 15 29 29 H 1.09001 * 109.46874 * 299.99802 * 17 16 15 30 30 H 1.09004 * 109.46970 * 179.97438 * 17 16 15 31 31 H 1.09006 * 109.46770 * 179.97438 * 18 16 15 32 32 H 1.09001 * 109.47456 * 299.99993 * 18 16 15 33 33 H 1.09000 * 109.46814 * 60.00298 * 18 16 15 34 34 H 1.08003 * 119.96488 * 180.27434 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1463 -2.2869 -3.6039 10 1 1.1658 -1.5865 -4.8161 11 1 3.1464 -0.1872 -4.8166 12 6 2.0325 -0.7104 1.2303 13 6 2.8275 -0.0368 2.1395 14 6 3.2895 -0.6843 3.2686 15 6 2.9556 -2.0139 3.4906 16 7 3.4211 -2.6718 4.6324 17 6 2.9489 -2.0052 5.8533 18 6 4.8865 -2.7731 4.6209 19 6 2.1616 -2.6903 2.5720 20 17 1.7473 -4.3547 2.8403 21 6 1.6977 -2.0342 1.4474 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 0.7085 1.1614 -3.4843 26 1 3.0875 0.9971 1.9665 27 1 3.9100 -0.1571 3.9783 28 1 1.8590 -2.0059 5.8695 29 1 3.3118 -0.9775 5.8697 30 1 3.3252 -2.5378 6.7268 31 1 5.2221 -3.2887 5.5208 32 1 5.2053 -3.3321 3.7411 33 1 5.3196 -1.7732 4.5927 34 1 1.0770 -2.5576 0.7352 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260659759.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:49 Heat of formation + Delta-G solvation = 15.801013 kcal Electronic energy + Delta-G solvation = -16453.505690 eV Core-core repulsion = 13797.900883 eV Total energy + Delta-G solvation = -2655.604807 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.58972 -36.81108 -35.93620 -33.85871 -31.11058 -30.24052 -27.99111 -27.54597 -25.19316 -24.31525 -22.15723 -21.38910 -19.62322 -16.78147 -16.36599 -15.40642 -15.18146 -14.95018 -14.48975 -13.77622 -13.62642 -13.22783 -12.83359 -12.51112 -12.31902 -12.25174 -11.67336 -11.65878 -11.46652 -11.14712 -11.04977 -10.95987 -10.62161 -10.42505 -10.25318 -10.12634 -9.51293 -9.05519 -8.43044 -8.41612 -8.26856 -7.81409 -6.06327 -4.13476 1.72352 1.78144 2.70694 3.26865 3.35376 3.40192 3.98025 4.16841 4.41684 5.15529 5.23407 5.26353 5.33495 5.46558 5.49720 5.64412 5.84924 5.88131 5.90025 6.00202 6.06948 6.27239 6.69569 6.76669 6.79323 6.94857 6.96990 7.08641 7.21284 7.27092 7.59233 7.66720 7.87006 8.03260 8.31670 8.89296 9.51876 10.99310 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028202 B = 0.006019 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.606981 B = 4650.440161 C = 4921.610498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.070 3.930 3 H 0.038 0.962 4 C -0.509 4.509 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.284 1.284 12 C -0.017 4.017 13 C -0.120 4.120 14 C -0.139 4.139 15 C 0.057 3.943 16 N -0.500 5.500 17 C 0.031 3.969 18 C 0.031 3.969 19 C -0.009 4.009 20 Cl -0.076 7.076 21 C -0.099 4.099 22 H 0.087 0.913 23 H 0.030 0.970 24 H 0.009 0.991 25 H 0.261 0.739 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.738 -4.335 12.913 14.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.052 3.948 3 H 0.056 0.944 4 C -0.547 4.547 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 C -0.018 4.018 13 C -0.138 4.138 14 C -0.159 4.159 15 C -0.037 4.037 16 N -0.221 5.221 17 C -0.116 4.116 18 C -0.116 4.116 19 C -0.037 4.037 20 Cl -0.047 7.047 21 C -0.119 4.119 22 H 0.105 0.895 23 H 0.049 0.951 24 H 0.028 0.972 25 H 0.071 0.929 26 H 0.140 0.860 27 H 0.134 0.866 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.443 -4.867 12.824 14.142 hybrid contribution 0.677 0.276 -0.829 1.105 sum 4.120 -4.591 11.995 13.488 Atomic orbital electron populations 1.21802 0.97353 0.99489 1.00436 1.17945 0.93071 0.95476 0.88299 0.94429 1.21134 1.31364 1.12475 0.89741 0.92296 1.24949 0.94945 0.94956 0.98988 1.69886 1.36559 1.22867 1.23442 0.86521 0.78722 0.79783 0.82965 1.19667 1.20919 1.20998 1.20711 0.92415 0.92876 0.95762 1.21109 0.98634 1.00210 0.93891 1.21358 1.01498 0.94375 0.98680 1.18263 1.00798 0.91459 0.93185 1.59527 1.10624 1.51311 1.00640 1.22412 1.01339 0.96511 0.91382 1.22413 0.86216 1.00279 1.02704 1.20854 1.00710 0.85594 0.96539 1.98312 1.92361 1.17493 1.96504 1.20999 1.00611 0.94884 0.95357 0.89451 0.95125 0.97164 0.92921 0.86025 0.86590 0.91267 0.95332 0.91340 0.91342 0.91196 0.95338 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.78 37.16 0.33 -2.79 16 2 C 0.07 1.70 2.48 -92.92 -0.23 1.47 16 3 H 0.04 0.96 7.87 -51.93 -0.41 0.56 16 4 C -0.51 -13.48 8.24 -34.44 -0.28 -13.77 16 5 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.61 11.32 55.43 0.63 -23.99 16 8 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C -0.02 -0.36 4.74 -104.59 -0.50 -0.86 16 13 C -0.12 -2.19 9.66 -39.61 -0.38 -2.57 16 14 C -0.14 -2.24 8.57 -39.39 -0.34 -2.57 16 15 C 0.06 0.94 4.73 -83.73 -0.40 0.55 16 16 N -0.50 -7.02 4.39 -186.81 -0.82 -7.84 16 17 C 0.03 0.36 9.35 60.07 0.56 0.92 16 18 C 0.03 0.37 9.38 60.06 0.56 0.93 16 19 C -0.01 -0.17 6.34 -39.31 -0.25 -0.42 16 20 Cl -0.08 -1.25 28.44 -51.86 -1.47 -2.72 16 21 C -0.10 -1.98 8.48 -39.58 -0.34 -2.31 16 22 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 23 H 0.03 0.68 7.38 -51.93 -0.38 0.30 16 24 H 0.01 0.20 8.14 -51.92 -0.42 -0.22 16 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.12 2.07 7.94 -52.49 -0.42 1.66 16 27 H 0.12 1.59 7.02 -52.48 -0.37 1.22 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.03 0.31 7.13 -51.93 -0.37 -0.06 16 30 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 31 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.03 0.32 7.34 -51.93 -0.38 -0.06 16 34 H 0.14 2.78 7.57 -52.48 -0.40 2.38 16 LS Contribution 295.95 15.07 4.46 4.46 Total: -1.00 -27.34 295.95 -8.27 -35.61 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.69 Total: -1.59 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -1.35 Total: -19.83 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: -0.19 Total: -31.83 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.47 Total: -2.72 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.34 -8.27 -35.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260659759.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.409 kcal (2) G-P(sol) polarization free energy of solvation -27.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds