Wall clock time and date at job start Mon Mar 30 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46833 * 2 1 4 4 C 1.50704 * 109.46955 * 240.00223 * 2 1 3 5 5 H 1.07993 * 119.99933 * 239.99632 * 4 2 1 6 6 C 1.37878 * 119.99691 * 59.99819 * 4 2 1 7 7 N 1.31516 * 120.00505 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99749 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47093 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47148 * 119.99763 * 8 6 4 11 11 H 1.48500 * 109.47412 * 240.00039 * 8 6 4 12 12 C 1.50696 * 109.47833 * 120.00277 * 2 1 3 13 13 C 1.38290 * 119.92144 * 240.00229 * 12 2 1 14 14 C 1.38119 * 120.09283 * 179.97438 * 13 12 2 15 15 C 1.38880 * 119.93766 * 0.02562 * 14 13 12 16 16 N 1.39757 * 120.07631 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99854 * 60.00223 * 16 15 14 18 18 C 1.46898 * 110.99801 * 296.04510 * 16 15 14 19 19 C 1.38982 * 119.84514 * 0.27483 * 15 14 13 20 20 Cl 1.73604 * 120.04971 * 179.70311 * 19 15 14 21 21 C 1.38215 * 119.90309 * 359.42722 * 19 15 14 22 22 H 1.08994 * 109.47474 * 59.99873 * 1 2 3 23 23 H 1.08996 * 109.47015 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46651 * 299.99654 * 1 2 3 25 25 H 0.96996 * 120.00352 * 179.97438 * 7 6 4 26 26 H 1.07998 * 119.95653 * 359.97057 * 13 12 2 27 27 H 1.08004 * 120.03154 * 180.02562 * 14 13 12 28 28 H 1.09002 * 109.47401 * 59.99789 * 17 16 15 29 29 H 1.09001 * 109.46874 * 299.99802 * 17 16 15 30 30 H 1.09004 * 109.46970 * 179.97438 * 17 16 15 31 31 H 1.09006 * 109.46770 * 179.97438 * 18 16 15 32 32 H 1.09001 * 109.47456 * 299.99993 * 18 16 15 33 33 H 1.09000 * 109.46814 * 60.00298 * 18 16 15 34 34 H 1.08003 * 119.96488 * 180.27434 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1463 -2.2869 -3.6039 10 1 1.1658 -1.5865 -4.8161 11 1 3.1464 -0.1872 -4.8166 12 6 2.0325 -0.7104 1.2303 13 6 2.8275 -0.0368 2.1395 14 6 3.2895 -0.6843 3.2686 15 6 2.9556 -2.0139 3.4906 16 7 3.4211 -2.6718 4.6324 17 6 2.9489 -2.0052 5.8533 18 6 4.8865 -2.7731 4.6209 19 6 2.1616 -2.6903 2.5720 20 17 1.7473 -4.3547 2.8403 21 6 1.6977 -2.0342 1.4474 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 0.7085 1.1614 -3.4843 26 1 3.0875 0.9971 1.9665 27 1 3.9100 -0.1571 3.9783 28 1 1.8590 -2.0059 5.8695 29 1 3.3118 -0.9775 5.8697 30 1 3.3252 -2.5378 6.7268 31 1 5.2221 -3.2887 5.5208 32 1 5.2053 -3.3321 3.7411 33 1 5.3196 -1.7732 4.5927 34 1 1.0770 -2.5576 0.7352 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260659759.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:49 Heat of formation + Delta-G solvation = 2.131556 kcal Electronic energy + Delta-G solvation = -16454.098442 eV Core-core repulsion = 13797.900883 eV Total energy + Delta-G solvation = -2656.197559 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.91984 -38.15255 -37.29689 -35.63003 -32.92857 -31.64988 -29.49410 -28.44357 -27.21638 -25.62335 -23.54685 -22.90870 -21.19115 -18.38884 -17.96922 -16.90709 -16.72580 -16.17086 -15.97411 -15.13582 -14.88828 -14.80314 -14.29224 -13.97702 -13.89273 -13.36119 -13.17586 -12.93240 -12.84825 -12.70519 -12.58524 -12.55370 -12.29028 -12.13514 -11.90024 -11.82659 -11.24036 -10.99195 -10.48017 -9.68909 -9.46041 -9.27671 -8.10670 -6.24136 0.30383 0.37501 1.33144 1.39974 1.43124 1.53770 2.42047 2.75330 2.90616 3.17671 3.93245 4.15005 4.21816 4.39242 4.45338 4.49657 4.65988 4.67352 4.72368 4.78503 4.95764 5.00832 5.02109 5.07258 5.21725 5.32593 5.37615 5.51204 5.64885 5.79489 5.99572 6.01069 6.05211 6.32723 6.38154 6.83987 7.43889 8.93878 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028202 B = 0.006019 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.606981 B = 4650.440161 C = 4921.610498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.072 3.928 3 H 0.014 0.986 4 C -0.521 4.521 5 H 0.050 0.950 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.950 3.050 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.279 1.279 12 C -0.044 4.044 13 C -0.122 4.122 14 C -0.128 4.128 15 C 0.071 3.929 16 N -0.514 5.514 17 C 0.029 3.971 18 C 0.030 3.970 19 C -0.020 4.020 20 Cl -0.064 7.064 21 C -0.109 4.109 22 H 0.061 0.939 23 H 0.030 0.970 24 H 0.027 0.973 25 H 0.262 0.738 26 H 0.130 0.870 27 H 0.149 0.851 28 H 0.060 0.940 29 H 0.038 0.962 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.000 -4.987 14.691 16.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.053 3.947 3 H 0.032 0.968 4 C -0.559 4.559 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.776 3.224 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.205 1.205 12 C -0.044 4.044 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.023 4.023 16 N -0.235 5.235 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.048 4.048 20 Cl -0.035 7.035 21 C -0.128 4.128 22 H 0.080 0.920 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.148 0.852 27 H 0.166 0.834 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.709 -5.524 14.615 16.319 hybrid contribution 0.313 0.432 -1.257 1.366 sum 5.022 -5.092 13.358 15.152 Atomic orbital electron populations 1.21644 0.97282 0.99246 0.99913 1.17773 0.93224 0.94260 0.89399 0.96811 1.21385 1.31125 1.12261 0.91112 0.93209 1.25652 0.95226 0.95656 1.01607 1.69998 1.37452 1.23951 1.24007 0.85616 0.78242 0.78743 0.79764 1.19532 1.20500 1.20522 1.20411 0.94809 0.93486 0.95688 1.21221 0.98077 1.00668 0.94134 1.21606 1.00807 0.94232 0.98113 1.18462 0.99046 0.91428 0.93390 1.59576 1.12028 1.51439 1.00454 1.22493 1.00969 0.97314 0.90921 1.22481 0.84694 1.00992 1.03479 1.20932 1.01119 0.86307 0.96447 1.98309 1.92329 1.16508 1.96385 1.20826 1.01216 0.94701 0.96096 0.92023 0.95124 0.95441 0.92855 0.85224 0.83380 0.92112 0.94315 0.88893 0.88792 0.92442 0.94435 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.78 71.98 0.63 -5.28 16 2 C 0.07 3.56 2.48 -12.29 -0.03 3.52 16 3 H 0.01 0.73 7.87 -2.38 -0.02 0.71 16 4 C -0.52 -28.25 8.24 25.60 0.21 -28.04 16 5 H 0.05 2.73 7.60 -2.91 -0.02 2.70 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.91 -51.73 11.32 21.45 0.24 -51.49 16 8 Si 0.95 43.37 29.54 68.60 2.03 45.39 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C -0.04 -1.83 4.74 -19.85 -0.09 -1.93 16 13 C -0.12 -4.34 9.66 22.25 0.21 -4.13 16 14 C -0.13 -3.77 8.57 22.40 0.19 -3.58 16 15 C 0.07 2.18 4.73 38.21 0.18 2.36 16 16 N -0.51 -12.78 4.39 -744.94 -3.27 -16.04 16 17 C 0.03 0.57 9.35 127.69 1.19 1.76 16 18 C 0.03 0.61 9.38 127.69 1.20 1.80 16 19 C -0.02 -0.72 6.34 22.44 0.14 -0.57 16 20 Cl -0.06 -2.05 28.44 -2.72 -0.08 -2.12 16 21 C -0.11 -4.38 8.48 22.27 0.19 -4.19 16 22 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 23 H 0.03 1.41 7.38 -2.39 -0.02 1.39 16 24 H 0.03 1.16 8.14 -2.38 -0.02 1.15 16 25 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 26 H 0.13 4.31 7.94 -2.91 -0.02 4.28 16 27 H 0.15 3.42 7.02 -2.91 -0.02 3.40 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 0.68 7.13 -2.39 -0.02 0.66 16 30 H 0.09 1.37 8.12 -2.38 -0.02 1.35 16 31 H 0.09 1.44 8.12 -2.38 -0.02 1.42 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.04 0.70 7.34 -2.39 -0.02 0.68 16 34 H 0.12 5.05 7.57 -2.91 -0.02 5.03 16 Total: -1.00 -58.71 295.95 4.48 -54.23 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.08 Total: 6.88 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 4.48 Total: -36.85 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: -3.02 Total: -67.53 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.08 Total: -2.12 kcal Total: -58.71 4.48 -54.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260659759.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.359 kcal (2) G-P(sol) polarization free energy of solvation -58.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds