Wall clock time and date at job start Mon Mar 30 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47125 * 2 1 4 4 C 1.50703 * 109.47735 * 119.99924 * 2 1 3 5 5 H 1.07994 * 119.99794 * 119.99454 * 4 2 1 6 6 C 1.37871 * 119.99785 * 300.00639 * 4 2 1 7 7 N 1.31518 * 120.00275 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99913 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47283 * 89.99505 * 8 6 4 10 10 H 1.48499 * 109.47441 * 209.99812 * 8 6 4 11 11 H 1.48496 * 109.47236 * 329.99674 * 8 6 4 12 12 C 1.50705 * 109.47129 * 240.00219 * 2 1 3 13 13 C 1.38291 * 119.91948 * 119.99577 * 12 2 1 14 14 C 1.38119 * 120.09110 * 180.02562 * 13 12 2 15 15 C 1.38880 * 119.93766 * 359.97438 * 14 13 12 16 16 N 1.39757 * 120.07631 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99854 * 60.00223 * 16 15 14 18 18 C 1.46898 * 110.99801 * 296.04510 * 16 15 14 19 19 C 1.38982 * 119.84514 * 0.27483 * 15 14 13 20 20 Cl 1.73604 * 120.04971 * 179.70311 * 19 15 14 21 21 C 1.38211 * 119.90444 * 359.46829 * 19 15 14 22 22 H 1.08998 * 109.46707 * 299.99548 * 1 2 3 23 23 H 1.08997 * 109.47193 * 60.00203 * 1 2 3 24 24 H 1.09004 * 109.46873 * 180.02562 * 1 2 3 25 25 H 0.97004 * 120.00278 * 180.02562 * 7 6 4 26 26 H 1.07998 * 119.95825 * 0.02562 * 13 12 2 27 27 H 1.08004 * 120.03154 * 179.97438 * 14 13 12 28 28 H 1.09002 * 109.47401 * 59.99789 * 17 16 15 29 29 H 1.09001 * 109.46874 * 299.99802 * 17 16 15 30 30 H 1.09004 * 109.46970 * 179.97438 * 17 16 15 31 31 H 1.09007 * 109.46909 * 183.95472 * 18 16 15 32 32 H 1.08998 * 109.47110 * 303.95079 * 18 16 15 33 33 H 1.09002 * 109.47061 * 63.95661 * 18 16 15 34 34 H 1.08005 * 119.96820 * 180.22864 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3216 -1.1203 4.0079 9 1 3.6299 -0.5458 4.4122 10 1 1.3434 -0.9494 5.1120 11 1 2.4862 -2.5661 3.7119 12 6 2.0323 -0.7104 -1.2305 13 6 2.8272 -0.0366 -2.1397 14 6 3.2891 -0.6841 -3.2690 15 6 2.9551 -2.0137 -3.4910 16 7 3.4213 -2.6718 -4.6324 17 6 4.8898 -2.6909 -4.6661 18 6 2.8745 -2.0621 -5.8518 19 6 2.1518 -2.6868 -2.5781 20 17 1.7246 -4.3466 -2.8543 21 6 1.6975 -2.0342 -1.4477 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7095 1.1617 3.4844 26 1 3.0872 0.9972 -1.9667 27 1 3.9095 -0.1569 -3.9786 28 1 5.2668 -3.2100 -3.7848 29 1 5.2664 -1.6680 -4.6741 30 1 5.2259 -3.2093 -5.5641 31 1 3.1968 -2.6359 -6.7209 32 1 1.7858 -2.0608 -5.8007 33 1 3.2355 -1.0372 -5.9389 34 1 1.0763 -2.5574 -0.7357 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260659762.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:52 Heat of formation + Delta-G solvation = 15.787176 kcal Electronic energy + Delta-G solvation = -16452.716246 eV Core-core repulsion = 13797.110839 eV Total energy + Delta-G solvation = -2655.605407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.58915 -36.81086 -35.93593 -33.85801 -31.10927 -30.24027 -27.99086 -27.54734 -25.19140 -24.31282 -22.15622 -21.38845 -19.62295 -16.77790 -16.36490 -15.40891 -15.17882 -14.95203 -14.49186 -13.78286 -13.62640 -13.22947 -12.84561 -12.47880 -12.31435 -12.26435 -11.67876 -11.65889 -11.45594 -11.14684 -11.05323 -10.94142 -10.64905 -10.42394 -10.25592 -10.11745 -9.50992 -9.06668 -8.42681 -8.41706 -8.26889 -7.81465 -6.06053 -4.13298 1.72301 1.78176 2.70710 3.28107 3.35092 3.39261 3.97995 4.16826 4.41773 5.15642 5.23696 5.26562 5.33121 5.46018 5.50008 5.64488 5.85051 5.87883 5.89839 6.00190 6.06979 6.27306 6.69574 6.76688 6.79334 6.94806 6.96985 7.08671 7.21234 7.27122 7.59209 7.66625 7.87160 8.03221 8.31793 8.89164 9.51995 10.99540 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028269 B = 0.006008 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.257998 B = 4659.127469 C = 4922.806884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.071 3.929 3 H 0.038 0.962 4 C -0.510 4.510 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 C -0.017 4.017 13 C -0.120 4.120 14 C -0.139 4.139 15 C 0.057 3.943 16 N -0.500 5.500 17 C 0.030 3.970 18 C 0.031 3.969 19 C -0.010 4.010 20 Cl -0.076 7.076 21 C -0.099 4.099 22 H 0.087 0.913 23 H 0.009 0.991 24 H 0.030 0.970 25 H 0.261 0.739 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.069 0.931 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 -4.296 -12.956 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.052 3.948 3 H 0.056 0.944 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.018 4.018 13 C -0.138 4.138 14 C -0.159 4.159 15 C -0.037 4.037 16 N -0.221 5.221 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.037 4.037 20 Cl -0.047 7.047 21 C -0.118 4.118 22 H 0.105 0.895 23 H 0.028 0.972 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.140 0.860 27 H 0.134 0.866 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.348 -4.835 -12.850 14.132 hybrid contribution 0.653 0.286 0.799 1.070 sum 4.001 -4.549 -12.051 13.489 Atomic orbital electron populations 1.21802 0.97355 0.99492 1.00435 1.17939 0.93063 0.95467 0.88285 0.94435 1.21094 1.31423 1.12512 0.89760 0.92350 1.24944 0.94925 0.94970 0.98971 1.69881 1.36504 1.22836 1.23538 0.86573 0.78595 0.80214 0.82573 1.20659 1.21166 1.19774 1.20714 0.92408 0.92852 0.95802 1.21111 0.98609 1.00216 0.93903 1.21361 1.01617 0.94222 0.98718 1.18264 1.00671 0.91403 0.93364 1.59527 1.08526 1.53293 1.00753 1.22414 0.86352 1.00188 1.02703 1.22403 1.00790 0.96953 0.91418 1.20854 1.00712 0.85687 0.96464 1.98312 1.92023 1.17957 1.96379 1.20999 1.00693 0.94911 0.95233 0.89456 0.97158 0.95122 0.92869 0.86025 0.86596 0.91195 0.95297 0.91339 0.91313 0.91284 0.95404 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.78 37.16 0.33 -2.79 16 2 C 0.07 1.70 2.48 -92.92 -0.23 1.47 16 3 H 0.04 0.96 7.87 -51.93 -0.41 0.55 16 4 C -0.51 -13.51 8.24 -34.44 -0.28 -13.79 16 5 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.62 11.32 55.43 0.63 -23.99 16 8 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 C -0.02 -0.36 4.74 -104.59 -0.50 -0.86 16 13 C -0.12 -2.18 9.66 -39.61 -0.38 -2.57 16 14 C -0.14 -2.24 8.62 -39.39 -0.34 -2.58 16 15 C 0.06 0.94 4.72 -83.73 -0.40 0.55 16 16 N -0.50 -7.02 4.39 -186.81 -0.82 -7.84 16 17 C 0.03 0.36 9.35 60.07 0.56 0.92 16 18 C 0.03 0.36 9.33 60.06 0.56 0.92 16 19 C -0.01 -0.17 6.34 -39.32 -0.25 -0.42 16 20 Cl -0.08 -1.25 28.44 -51.86 -1.47 -2.72 16 21 C -0.10 -1.98 8.48 -39.58 -0.34 -2.31 16 22 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 23 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.03 0.68 7.38 -51.93 -0.38 0.30 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.12 2.07 7.94 -52.49 -0.42 1.66 16 27 H 0.12 1.59 7.05 -52.48 -0.37 1.22 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.32 7.13 -51.93 -0.37 -0.05 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 33 H 0.03 0.30 7.48 -51.93 -0.39 -0.09 16 34 H 0.14 2.78 7.57 -52.48 -0.40 2.38 16 LS Contribution 296.11 15.07 4.46 4.46 Total: -1.00 -27.31 296.11 -8.28 -35.59 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.70 Total: -1.57 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -1.36 Total: -19.83 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: -0.19 Total: -31.83 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.47 Total: -2.72 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.31 -8.28 -35.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260659762.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.373 kcal (2) G-P(sol) polarization free energy of solvation -27.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds