Wall clock time and date at job start Mon Mar 30 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47125 * 2 1 4 4 C 1.50703 * 109.47735 * 119.99924 * 2 1 3 5 5 H 1.07994 * 119.99794 * 119.99454 * 4 2 1 6 6 C 1.37871 * 119.99785 * 300.00639 * 4 2 1 7 7 N 1.31518 * 120.00275 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99913 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47283 * 89.99505 * 8 6 4 10 10 H 1.48499 * 109.47441 * 209.99812 * 8 6 4 11 11 H 1.48496 * 109.47236 * 329.99674 * 8 6 4 12 12 C 1.50705 * 109.47129 * 240.00219 * 2 1 3 13 13 C 1.38291 * 119.91948 * 119.99577 * 12 2 1 14 14 C 1.38119 * 120.09110 * 180.02562 * 13 12 2 15 15 C 1.38880 * 119.93766 * 359.97438 * 14 13 12 16 16 N 1.39757 * 120.07631 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99854 * 60.00223 * 16 15 14 18 18 C 1.46898 * 110.99801 * 296.04510 * 16 15 14 19 19 C 1.38982 * 119.84514 * 0.27483 * 15 14 13 20 20 Cl 1.73604 * 120.04971 * 179.70311 * 19 15 14 21 21 C 1.38211 * 119.90444 * 359.46829 * 19 15 14 22 22 H 1.08998 * 109.46707 * 299.99548 * 1 2 3 23 23 H 1.08997 * 109.47193 * 60.00203 * 1 2 3 24 24 H 1.09004 * 109.46873 * 180.02562 * 1 2 3 25 25 H 0.97004 * 120.00278 * 180.02562 * 7 6 4 26 26 H 1.07998 * 119.95825 * 0.02562 * 13 12 2 27 27 H 1.08004 * 120.03154 * 179.97438 * 14 13 12 28 28 H 1.09002 * 109.47401 * 59.99789 * 17 16 15 29 29 H 1.09001 * 109.46874 * 299.99802 * 17 16 15 30 30 H 1.09004 * 109.46970 * 179.97438 * 17 16 15 31 31 H 1.09007 * 109.46909 * 183.95472 * 18 16 15 32 32 H 1.08998 * 109.47110 * 303.95079 * 18 16 15 33 33 H 1.09002 * 109.47061 * 63.95661 * 18 16 15 34 34 H 1.08005 * 119.96820 * 180.22864 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3216 -1.1203 4.0079 9 1 3.6299 -0.5458 4.4122 10 1 1.3434 -0.9494 5.1120 11 1 2.4862 -2.5661 3.7119 12 6 2.0323 -0.7104 -1.2305 13 6 2.8272 -0.0366 -2.1397 14 6 3.2891 -0.6841 -3.2690 15 6 2.9551 -2.0137 -3.4910 16 7 3.4213 -2.6718 -4.6324 17 6 4.8898 -2.6909 -4.6661 18 6 2.8745 -2.0621 -5.8518 19 6 2.1518 -2.6868 -2.5781 20 17 1.7246 -4.3466 -2.8543 21 6 1.6975 -2.0342 -1.4477 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7095 1.1617 3.4844 26 1 3.0872 0.9972 -1.9667 27 1 3.9095 -0.1569 -3.9786 28 1 5.2668 -3.2100 -3.7848 29 1 5.2664 -1.6680 -4.6741 30 1 5.2259 -3.2093 -5.5641 31 1 3.1968 -2.6359 -6.7209 32 1 1.7858 -2.0608 -5.8007 33 1 3.2355 -1.0372 -5.9389 34 1 1.0763 -2.5574 -0.7357 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260659762.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:52 Heat of formation + Delta-G solvation = 2.153595 kcal Electronic energy + Delta-G solvation = -16453.307443 eV Core-core repulsion = 13797.110839 eV Total energy + Delta-G solvation = -2656.196604 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.91917 -38.15189 -37.29664 -35.62927 -32.92729 -31.64965 -29.49358 -28.44466 -27.21402 -25.62081 -23.54590 -22.90728 -21.19119 -18.38520 -17.96693 -16.90825 -16.72261 -16.17259 -15.97698 -15.13439 -14.89537 -14.79543 -14.30626 -13.97868 -13.87700 -13.36412 -13.16386 -12.92870 -12.84296 -12.70065 -12.59440 -12.55390 -12.30914 -12.12678 -11.89662 -11.82490 -11.23754 -11.00363 -10.47371 -9.68962 -9.46348 -9.27563 -8.10436 -6.23978 0.30358 0.37555 1.33167 1.41159 1.43133 1.52726 2.42168 2.75435 2.90504 3.17884 3.93274 4.14961 4.22018 4.38840 4.45242 4.49631 4.66271 4.67364 4.72448 4.78430 4.95839 5.01127 5.01801 5.07150 5.21783 5.32566 5.37665 5.51130 5.64842 5.79555 5.99536 6.01126 6.05214 6.32782 6.38195 6.83885 7.43981 8.93906 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.028269 B = 0.006008 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.257998 B = 4659.127469 C = 4922.806884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.072 3.928 3 H 0.014 0.986 4 C -0.522 4.522 5 H 0.050 0.950 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.950 3.050 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.271 1.271 12 C -0.044 4.044 13 C -0.122 4.122 14 C -0.128 4.128 15 C 0.072 3.928 16 N -0.514 5.514 17 C 0.029 3.971 18 C 0.030 3.970 19 C -0.020 4.020 20 Cl -0.064 7.064 21 C -0.109 4.109 22 H 0.061 0.939 23 H 0.027 0.973 24 H 0.030 0.970 25 H 0.262 0.738 26 H 0.130 0.870 27 H 0.149 0.851 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.895 -4.949 -14.746 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.054 3.946 3 H 0.032 0.968 4 C -0.560 4.560 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.776 3.224 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.196 1.196 12 C -0.044 4.044 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.023 4.023 16 N -0.235 5.235 17 C -0.117 4.117 18 C -0.116 4.116 19 C -0.048 4.048 20 Cl -0.035 7.035 21 C -0.128 4.128 22 H 0.080 0.920 23 H 0.046 0.954 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.148 0.852 27 H 0.166 0.834 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.622 -5.494 -14.654 16.318 hybrid contribution 0.287 0.443 1.230 1.339 sum 4.909 -5.051 -13.424 15.159 Atomic orbital electron populations 1.21643 0.97283 0.99244 0.99914 1.17768 0.93219 0.94249 0.89391 0.96825 1.21356 1.31196 1.12319 0.91126 0.93201 1.25648 0.95204 0.95667 1.01595 1.69995 1.37402 1.23925 1.24058 0.85672 0.78175 0.79145 0.79413 1.20165 1.20738 1.19581 1.20412 0.94802 0.93458 0.95725 1.21222 0.98052 1.00672 0.94146 1.21609 1.00928 0.94073 0.98145 1.18462 0.98907 0.91362 0.93584 1.59577 1.09968 1.53373 1.00591 1.22486 0.84752 1.01020 1.03458 1.22479 1.00241 0.97932 0.90931 1.20930 1.01140 0.86394 0.96346 1.98309 1.91992 1.16982 1.96256 1.20823 1.01298 0.94730 0.95977 0.92030 0.95429 0.95128 0.92854 0.85228 0.83385 0.92393 0.94328 0.88825 0.88937 0.92225 0.94297 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.78 71.98 0.63 -5.28 16 2 C 0.07 3.57 2.48 -12.28 -0.03 3.54 16 3 H 0.01 0.72 7.87 -2.39 -0.02 0.71 16 4 C -0.52 -28.32 8.24 25.60 0.21 -28.10 16 5 H 0.05 2.72 7.60 -2.91 -0.02 2.70 16 6 C 0.02 0.97 5.30 84.65 0.45 1.42 16 7 N -0.91 -51.74 11.32 21.45 0.24 -51.49 16 8 Si 0.95 43.36 29.54 68.60 2.03 45.38 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 C -0.04 -1.83 4.74 -19.84 -0.09 -1.93 16 13 C -0.12 -4.34 9.66 22.25 0.21 -4.12 16 14 C -0.13 -3.77 8.62 22.40 0.19 -3.57 16 15 C 0.07 2.18 4.72 38.21 0.18 2.37 16 16 N -0.51 -12.77 4.39 -744.94 -3.27 -16.04 16 17 C 0.03 0.59 9.35 127.69 1.19 1.78 16 18 C 0.03 0.59 9.33 127.69 1.19 1.79 16 19 C -0.02 -0.72 6.34 22.44 0.14 -0.58 16 20 Cl -0.06 -2.05 28.44 -2.72 -0.08 -2.13 16 21 C -0.11 -4.37 8.48 22.27 0.19 -4.18 16 22 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.03 1.41 7.38 -2.38 -0.02 1.39 16 25 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 26 H 0.13 4.31 7.94 -2.91 -0.02 4.28 16 27 H 0.15 3.42 7.05 -2.91 -0.02 3.40 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 0.71 7.13 -2.39 -0.02 0.69 16 30 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.06 1.28 8.12 -2.39 -0.02 1.26 16 33 H 0.04 0.68 7.48 -2.39 -0.02 0.67 16 34 H 0.12 5.05 7.57 -2.91 -0.02 5.03 16 Total: -1.00 -58.64 296.11 4.48 -54.17 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.08 Total: 6.98 kcal Atomic # 6 Polarization: -41.34 SS G_CDS: 4.47 Total: -36.87 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: -3.02 Total: -67.53 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.08 Total: -2.13 kcal Total: -58.64 4.48 -54.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260659762.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.324 kcal (2) G-P(sol) polarization free energy of solvation -58.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds