Wall clock time and date at job start Mon Mar 30 2020 07:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35896 * 116.99976 * 2 1 4 4 C 1.38706 * 120.04339 * 269.97928 * 3 2 1 5 5 C 1.50711 * 120.03987 * 359.97438 * 4 3 2 6 6 C 1.38339 * 119.92523 * 180.02562 * 4 3 2 7 7 F 1.35098 * 120.00155 * 179.97438 * 6 4 3 8 8 C 1.38519 * 120.00069 * 359.97438 * 6 4 3 9 9 C 1.38201 * 120.08744 * 359.76811 * 8 6 4 10 10 C 1.38181 * 120.07872 * 0.50802 * 9 8 6 11 11 C 1.50699 * 120.00350 * 179.74389 * 10 9 8 12 12 H 1.09004 * 109.46963 * 144.72307 * 11 10 9 13 13 N 1.46905 * 109.47256 * 24.72863 * 11 10 9 14 14 C 1.52997 * 109.47337 * 264.72616 * 11 10 9 15 15 C 1.50701 * 109.47212 * 184.99952 * 14 11 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 11 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 H 1.08996 * 109.46782 * 60.00159 * 1 2 3 24 24 H 1.08993 * 109.47048 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47218 * 300.00010 * 1 2 3 26 26 H 1.08999 * 109.46736 * 89.99668 * 5 4 3 27 27 H 1.08994 * 109.47179 * 210.00053 * 5 4 3 28 28 H 1.08997 * 109.46701 * 330.00126 * 5 4 3 29 29 H 1.08009 * 119.95847 * 180.02562 * 8 6 4 30 30 H 1.08003 * 119.96478 * 180.25242 * 9 8 6 31 31 H 1.00898 * 110.99705 * 300.00162 * 13 11 10 32 32 H 1.00897 * 110.99904 * 63.95071 * 13 11 10 33 33 H 1.09002 * 109.47153 * 64.99954 * 14 11 10 34 34 H 1.09001 * 109.46832 * 305.00144 * 14 11 10 35 35 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3617 1.8294 -1.2007 5 6 2.0214 1.1592 -2.5070 6 6 2.9902 3.0618 -1.1979 7 9 3.2988 3.6654 -2.3664 8 6 3.3031 3.6769 0.0032 9 6 2.9839 3.0633 1.1997 10 6 2.3613 1.8297 1.2009 11 6 2.0192 1.1595 2.5066 12 1 1.0803 0.6160 2.4010 13 7 1.8806 2.1766 3.5575 14 6 3.1341 0.1828 2.8860 15 6 2.7365 -0.5763 4.1256 16 1 1.7838 -0.3820 4.5956 17 6 3.5887 -1.5198 4.6592 18 7 3.2415 -2.1827 5.7407 19 14 5.2363 -1.8565 3.8459 20 1 6.2673 -0.9589 4.4260 21 1 5.6236 -3.2710 4.0792 22 1 5.1278 -1.6073 2.3860 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.0235 1.4638 -2.8224 27 1 2.7474 1.4518 -3.2654 28 1 2.0471 0.0772 -2.3777 29 1 3.7935 4.6392 0.0046 30 1 3.2252 3.5465 2.1349 31 1 2.7384 2.6946 3.6747 32 1 1.1082 2.7956 3.3619 33 1 4.0528 0.7370 3.0783 34 1 3.2972 -0.5181 2.0673 35 1 3.8412 -2.8462 6.1163 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260709888.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:25 Heat of formation + Delta-G solvation = -61.271277 kcal Electronic energy + Delta-G solvation = -18970.349577 eV Core-core repulsion = 15883.066289 eV Total energy + Delta-G solvation = -3087.283288 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.90952 -40.22149 -37.19919 -35.61821 -32.61496 -31.96797 -29.75330 -28.84394 -27.32964 -26.38950 -24.31492 -22.19026 -21.56443 -19.49994 -18.15379 -17.21662 -16.74209 -15.98394 -15.73427 -15.36009 -15.12275 -14.95318 -14.55236 -14.08735 -13.71838 -13.31766 -13.24705 -12.94064 -12.61334 -12.25367 -12.11534 -11.86885 -11.73534 -11.44986 -11.19501 -10.85236 -10.30793 -10.09160 -9.90881 -9.71078 -9.09499 -8.68524 -8.43292 -8.29536 -8.07173 -5.91250 -3.85882 1.08088 1.15922 3.33647 3.37402 3.44998 3.50159 3.83600 4.36817 4.55372 4.69961 4.78232 4.93309 5.11117 5.28311 5.36313 5.40206 5.44987 5.46894 5.50745 5.55555 5.70885 5.81317 6.00495 6.11192 6.16379 6.25311 6.39867 6.65981 6.73664 7.17461 7.32886 7.58423 7.78142 7.92213 8.03322 8.69862 9.20169 9.71392 11.22474 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.006540 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.134791 B = 4280.547697 C = 4394.872145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.321 6.321 3 C 0.127 3.873 4 C -0.139 4.139 5 C -0.109 4.109 6 C 0.091 3.909 7 F -0.141 7.141 8 C -0.151 4.151 9 C -0.094 4.094 10 C -0.125 4.125 11 C 0.148 3.852 12 H 0.088 0.912 13 N -0.819 5.819 14 C 0.004 3.996 15 C -0.492 4.492 16 H 0.080 0.920 17 C 0.064 3.936 18 N -0.907 5.907 19 Si 0.871 3.129 20 H -0.280 1.280 21 H -0.289 1.289 22 H -0.266 1.266 23 H 0.041 0.959 24 H 0.097 0.903 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.334 0.666 32 H 0.325 0.675 33 H 0.009 0.991 34 H 0.025 0.975 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 10.554 -14.788 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.238 6.238 3 C 0.082 3.918 4 C -0.140 4.140 5 C -0.166 4.166 6 C 0.072 3.928 7 F -0.120 7.120 8 C -0.170 4.170 9 C -0.112 4.112 10 C -0.128 4.128 11 C 0.036 3.964 12 H 0.105 0.895 13 N -0.347 5.347 14 C -0.034 4.034 15 C -0.530 4.530 16 H 0.098 0.902 17 C -0.136 4.136 18 N -0.547 5.547 19 Si 0.699 3.301 20 H -0.206 1.206 21 H -0.215 1.215 22 H -0.191 1.191 23 H 0.060 0.940 24 H 0.116 0.884 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.148 0.852 32 H 0.136 0.864 33 H 0.027 0.973 34 H 0.043 0.957 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.723 9.628 -14.193 17.550 hybrid contribution 1.184 0.774 -1.335 1.945 sum -2.539 10.402 -15.528 18.862 Atomic orbital electron populations 1.22991 0.78787 1.03603 1.00379 1.86077 1.19776 1.23824 1.94089 1.18050 0.97106 0.86214 0.90419 1.20169 1.02779 0.94257 0.96832 1.20610 1.01628 1.01459 0.92885 1.17232 1.01943 0.92336 0.81303 1.91453 1.91266 1.82832 1.46417 1.21067 1.03310 1.01514 0.91077 1.20746 0.98008 0.94773 0.97712 1.21880 0.98213 0.94503 0.98185 1.20492 1.01559 0.92313 0.82020 0.89451 1.58778 1.08613 1.19439 1.47875 1.19595 0.92360 0.93623 0.97819 1.20997 1.05451 1.18281 1.08299 0.90213 1.24972 0.97816 0.95978 0.94851 1.69905 1.37039 1.26037 1.21687 0.86921 0.85172 0.77366 0.80691 1.20568 1.21507 1.19113 0.93998 0.88438 0.93132 0.91296 0.91322 0.90209 0.84801 0.84775 0.85168 0.86379 0.97313 0.95659 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.80 101.05 1.09 1.55 16 2 O -0.32 -5.30 8.73 -19.41 -0.17 -5.47 16 3 C 0.13 2.06 5.67 -39.23 -0.22 1.84 16 4 C -0.14 -2.02 5.90 -104.41 -0.62 -2.64 16 5 C -0.11 -1.31 9.61 36.01 0.35 -0.96 16 6 C 0.09 1.28 7.24 -39.44 -0.29 1.00 16 7 F -0.14 -1.92 16.47 2.25 0.04 -1.89 16 8 C -0.15 -1.97 10.02 -39.49 -0.40 -2.37 16 9 C -0.09 -1.33 9.26 -39.62 -0.37 -1.69 16 10 C -0.12 -2.07 5.06 -104.46 -0.53 -2.60 16 11 C 0.15 2.85 2.65 -68.86 -0.18 2.67 16 12 H 0.09 1.76 6.42 -51.93 -0.33 1.42 16 13 N -0.82 -14.27 8.54 -5.65 -0.05 -14.32 16 14 C 0.00 0.09 3.67 -27.88 -0.10 -0.02 16 15 C -0.49 -14.06 9.39 -34.44 -0.32 -14.38 16 16 H 0.08 2.48 7.99 -52.49 -0.42 2.06 16 17 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 18 N -0.91 -28.40 13.96 55.43 0.77 -27.62 16 19 Si 0.87 22.30 27.47 -169.99 -4.67 17.63 16 20 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 22 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 23 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.63 7.17 -51.93 -0.37 0.26 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.77 7.64 -51.93 -0.40 0.37 16 28 H 0.08 0.97 7.53 -51.93 -0.39 0.58 16 29 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.13 1.64 6.28 -52.48 -0.33 1.31 16 31 H 0.33 5.36 7.21 -39.29 -0.28 5.08 16 32 H 0.32 4.65 9.06 -39.29 -0.36 4.29 16 33 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 34 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 295.54 15.07 4.45 4.45 Total: -1.00 -32.41 295.54 -5.81 -38.22 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.51 Total: 4.81 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -1.68 Total: -15.82 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.73 Total: -41.94 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.17 Total: -5.47 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.41 -5.81 -38.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260709888.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.053 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds