Wall clock time and date at job start Mon Mar 30 2020 07:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35896 * 116.99976 * 2 1 4 4 C 1.38706 * 120.04339 * 269.97928 * 3 2 1 5 5 C 1.50711 * 120.03987 * 359.97438 * 4 3 2 6 6 C 1.38339 * 119.92523 * 180.02562 * 4 3 2 7 7 F 1.35098 * 120.00155 * 179.97438 * 6 4 3 8 8 C 1.38519 * 120.00069 * 359.97438 * 6 4 3 9 9 C 1.38201 * 120.08744 * 359.76811 * 8 6 4 10 10 C 1.38181 * 120.07872 * 0.50802 * 9 8 6 11 11 C 1.50699 * 120.00350 * 179.74389 * 10 9 8 12 12 H 1.09004 * 109.46963 * 144.72307 * 11 10 9 13 13 N 1.46905 * 109.47256 * 24.72863 * 11 10 9 14 14 C 1.52997 * 109.47337 * 264.72616 * 11 10 9 15 15 C 1.50701 * 109.47212 * 184.99952 * 14 11 10 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 11 18 18 N 1.31512 * 119.99594 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47061 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99430 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99876 * 19 17 15 23 23 H 1.08996 * 109.46782 * 60.00159 * 1 2 3 24 24 H 1.08993 * 109.47048 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47218 * 300.00010 * 1 2 3 26 26 H 1.08999 * 109.46736 * 89.99668 * 5 4 3 27 27 H 1.08994 * 109.47179 * 210.00053 * 5 4 3 28 28 H 1.08997 * 109.46701 * 330.00126 * 5 4 3 29 29 H 1.08009 * 119.95847 * 180.02562 * 8 6 4 30 30 H 1.08003 * 119.96478 * 180.25242 * 9 8 6 31 31 H 1.00898 * 110.99705 * 300.00162 * 13 11 10 32 32 H 1.00897 * 110.99904 * 63.95071 * 13 11 10 33 33 H 1.09002 * 109.47153 * 64.99954 * 14 11 10 34 34 H 1.09001 * 109.46832 * 305.00144 * 14 11 10 35 35 H 0.97002 * 119.99739 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3617 1.8294 -1.2007 5 6 2.0214 1.1592 -2.5070 6 6 2.9902 3.0618 -1.1979 7 9 3.2988 3.6654 -2.3664 8 6 3.3031 3.6769 0.0032 9 6 2.9839 3.0633 1.1997 10 6 2.3613 1.8297 1.2009 11 6 2.0192 1.1595 2.5066 12 1 1.0803 0.6160 2.4010 13 7 1.8806 2.1766 3.5575 14 6 3.1341 0.1828 2.8860 15 6 2.7365 -0.5763 4.1256 16 1 1.7838 -0.3820 4.5956 17 6 3.5887 -1.5198 4.6592 18 7 3.2415 -2.1827 5.7407 19 14 5.2363 -1.8565 3.8459 20 1 6.2673 -0.9589 4.4260 21 1 5.6236 -3.2710 4.0792 22 1 5.1278 -1.6073 2.3860 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.0235 1.4638 -2.8224 27 1 2.7474 1.4518 -3.2654 28 1 2.0471 0.0772 -2.3777 29 1 3.7935 4.6392 0.0046 30 1 3.2252 3.5465 2.1349 31 1 2.7384 2.6946 3.6747 32 1 1.1082 2.7956 3.3619 33 1 4.0528 0.7370 3.0783 34 1 3.2972 -0.5181 2.0673 35 1 3.8412 -2.8462 6.1163 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260709888.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:24 Heat of formation + Delta-G solvation = -83.381842 kcal Electronic energy + Delta-G solvation = -18971.308363 eV Core-core repulsion = 15883.066289 eV Total energy + Delta-G solvation = -3088.242074 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.97199 -41.38122 -38.37178 -37.05501 -34.60091 -33.22658 -30.99247 -30.69067 -28.37120 -27.44585 -25.99495 -23.40599 -23.06741 -20.96822 -19.26366 -18.89374 -18.32309 -17.11989 -16.83494 -16.78785 -16.34945 -16.19350 -16.05642 -15.64662 -15.08300 -14.66908 -14.34059 -14.24013 -14.01251 -13.73476 -13.47998 -13.14038 -13.01329 -12.91656 -12.64370 -12.25184 -11.99067 -11.80447 -11.75669 -11.28718 -11.03292 -10.69856 -9.75018 -9.57480 -9.38833 -8.19601 -6.18675 -0.01424 0.04031 1.34338 1.37218 1.48416 2.25269 2.40006 2.72700 3.14389 3.28911 3.64940 3.69583 3.82729 3.86731 4.22362 4.34081 4.38769 4.41480 4.49555 4.58160 4.64063 4.72645 4.76203 4.91211 5.04627 5.11729 5.12910 5.25956 5.28563 5.55755 5.66877 5.72311 6.34990 6.46829 6.50216 6.79672 6.89383 7.42192 8.97464 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.024067 B = 0.006540 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.134791 B = 4280.547697 C = 4394.872145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.347 6.347 3 C 0.113 3.887 4 C -0.146 4.146 5 C -0.107 4.107 6 C 0.090 3.910 7 F -0.137 7.137 8 C -0.143 4.143 9 C -0.089 4.089 10 C -0.145 4.145 11 C 0.161 3.839 12 H 0.070 0.930 13 N -0.832 5.832 14 C 0.010 3.990 15 C -0.492 4.492 16 H 0.041 0.959 17 C 0.003 3.997 18 N -0.953 5.953 19 Si 0.938 3.062 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.257 1.257 23 H 0.065 0.935 24 H 0.108 0.892 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.165 0.835 30 H 0.153 0.847 31 H 0.343 0.657 32 H 0.344 0.656 33 H 0.012 0.988 34 H 0.013 0.987 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 12.171 -16.698 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.264 6.264 3 C 0.069 3.931 4 C -0.147 4.147 5 C -0.164 4.164 6 C 0.071 3.929 7 F -0.116 7.116 8 C -0.162 4.162 9 C -0.108 4.108 10 C -0.148 4.148 11 C 0.049 3.951 12 H 0.088 0.912 13 N -0.363 5.363 14 C -0.028 4.028 15 C -0.530 4.530 16 H 0.059 0.941 17 C -0.193 4.193 18 N -0.596 5.596 19 Si 0.763 3.237 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.181 1.181 23 H 0.083 0.917 24 H 0.126 0.874 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.182 0.818 30 H 0.170 0.830 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.031 0.969 34 H 0.031 0.969 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.741 11.272 -16.119 19.859 hybrid contribution 0.771 0.313 -0.751 1.121 sum -1.970 11.585 -16.870 20.559 Atomic orbital electron populations 1.23173 0.77166 1.04664 1.01172 1.86022 1.21582 1.24501 1.94271 1.18224 0.97619 0.86271 0.90983 1.20370 1.02596 0.94595 0.97184 1.20651 1.02880 1.00960 0.91884 1.17386 1.01522 0.92233 0.81805 1.91467 1.91154 1.82681 1.46279 1.21353 1.02342 1.02381 0.90078 1.20929 0.97036 0.93749 0.99051 1.21610 1.00572 0.95872 0.96720 1.19979 0.98929 0.92105 0.84083 0.91201 1.58651 1.09957 1.19938 1.47739 1.19441 0.94222 0.94091 0.95031 1.21237 1.03807 1.18489 1.09463 0.94095 1.25851 1.01972 0.95975 0.95482 1.70059 1.38763 1.27166 1.23571 0.85836 0.80419 0.77423 0.80002 1.19289 1.21155 1.18134 0.91665 0.87350 0.93802 0.89511 0.90522 0.90725 0.81754 0.82981 0.84165 0.84261 0.96940 0.96895 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.80 113.37 1.22 2.00 16 2 O -0.35 -11.30 8.73 -92.38 -0.81 -12.11 16 3 C 0.11 3.56 5.67 22.50 0.13 3.69 16 4 C -0.15 -3.94 5.90 -19.72 -0.12 -4.06 16 5 C -0.11 -2.33 9.61 71.24 0.68 -1.64 16 6 C 0.09 2.26 7.24 22.36 0.16 2.43 16 7 F -0.14 -3.31 16.47 44.97 0.74 -2.57 16 8 C -0.14 -3.24 10.02 22.33 0.22 -3.02 16 9 C -0.09 -2.29 9.26 22.25 0.21 -2.08 16 10 C -0.14 -4.61 5.06 -19.76 -0.10 -4.71 16 11 C 0.16 6.19 2.65 44.17 0.12 6.31 16 12 H 0.07 2.88 6.42 -2.39 -0.02 2.87 16 13 N -0.83 -28.46 8.54 -171.79 -1.47 -29.93 16 14 C 0.01 0.47 3.67 29.85 0.11 0.58 16 15 C -0.49 -28.73 9.39 25.60 0.24 -28.49 16 16 H 0.04 2.65 7.99 -2.91 -0.02 2.62 16 17 C 0.00 0.16 5.47 84.66 0.46 0.62 16 18 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 19 Si 0.94 46.16 27.47 68.60 1.88 48.04 16 20 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.26 -12.16 6.54 99.48 0.65 -11.51 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.04 1.10 7.17 -2.39 -0.02 1.09 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 1.52 7.64 -2.39 -0.02 1.51 16 28 H 0.07 1.70 7.53 -2.39 -0.02 1.68 16 29 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 30 H 0.15 3.26 6.28 -2.91 -0.02 3.24 16 31 H 0.34 10.52 7.21 -89.70 -0.65 9.87 16 32 H 0.34 9.48 9.06 -89.70 -0.81 8.66 16 33 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 34 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 35 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -70.42 295.54 3.60 -66.82 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -0.39 Total: 18.98 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 3.34 Total: -28.39 kcal Atomic # 7 Polarization: -89.61 SS G_CDS: -1.17 Total: -90.78 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.81 Total: -12.11 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.74 Total: -2.57 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.88 Total: 48.04 kcal Total: -70.42 3.60 -66.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260709888.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.562 kcal (2) G-P(sol) polarization free energy of solvation -70.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds