Wall clock time and date at job start Mon Mar 30 2020 06:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99853 * 2 1 4 4 C 1.39750 * 110.99598 * 123.94710 * 2 1 3 5 5 C 1.38875 * 120.08337 * 299.97979 * 4 2 1 6 6 C 1.38112 * 119.94289 * 180.02562 * 5 4 2 7 7 C 1.50696 * 119.95694 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47307 * 90.00143 * 7 6 5 9 9 C 1.50696 * 109.47307 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00219 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99940 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00033 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00082 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46951 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47151 * 119.99911 * 13 11 9 16 16 H 1.48501 * 109.46965 * 240.00142 * 13 11 9 17 17 C 1.38299 * 120.09213 * 0.02562 * 6 5 4 18 18 C 1.38273 * 120.15578 * 359.95542 * 17 6 5 19 19 C 1.38213 * 120.06210 * 0.04568 * 18 17 6 20 20 Cl 1.73595 * 120.04809 * 180.25758 * 19 18 17 21 21 H 1.09003 * 109.47573 * 296.04977 * 1 2 3 22 22 H 1.09003 * 109.46999 * 56.05209 * 1 2 3 23 23 H 1.09006 * 109.47115 * 176.04733 * 1 2 3 24 24 H 1.08999 * 109.46874 * 183.95485 * 3 2 1 25 25 H 1.09005 * 109.46571 * 303.95324 * 3 2 1 26 26 H 1.08997 * 109.47325 * 63.95142 * 3 2 1 27 27 H 1.08007 * 120.03109 * 0.02562 * 5 4 2 28 28 H 1.09001 * 109.47396 * 210.00273 * 7 6 5 29 29 H 1.09002 * 109.47331 * 329.99906 * 7 6 5 30 30 H 1.09001 * 109.46999 * 300.00373 * 8 7 6 31 31 H 1.09002 * 109.47118 * 59.99633 * 8 7 6 32 32 H 0.97003 * 119.99652 * 179.97438 * 12 11 9 33 33 H 1.07998 * 119.92343 * 179.97438 * 17 6 5 34 34 H 1.08000 * 119.96730 * 180.02562 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9697 -0.7286 1.0823 5 6 1.6585 -0.3482 2.3812 6 6 2.1554 -1.0700 3.4487 7 6 1.8175 -0.6578 4.8583 8 6 0.5372 -1.3672 5.3041 9 6 0.1989 -0.9546 6.7134 10 1 0.8338 -0.2565 7.2388 11 6 -0.9211 -1.4682 7.3321 12 7 -1.6944 -2.3178 6.6920 13 14 -1.3408 -0.9561 9.0788 14 1 -0.3201 0.0029 9.5723 15 1 -2.6778 -0.3100 9.0975 16 1 -1.3579 -2.1547 9.9554 17 6 2.9627 -2.1706 3.2259 18 6 3.2747 -2.5531 1.9343 19 6 2.7810 -1.8353 0.8613 20 17 3.1675 -2.3198 -0.7603 21 1 -0.3634 0.4513 0.9233 22 1 -0.3633 0.5739 -0.8525 23 1 -0.3634 -1.0253 -0.0708 24 1 3.0827 1.3433 -0.0709 25 1 1.5897 1.9163 -0.8525 26 1 1.7043 1.8724 0.9232 27 1 1.0285 0.5114 2.5565 28 1 2.6359 -0.9332 5.5235 29 1 1.6667 0.4211 4.8951 30 1 -0.2812 -1.0919 4.6388 31 1 0.6880 -2.4461 5.2672 32 1 -2.4822 -2.6795 7.1275 33 1 3.3501 -2.7328 4.0627 34 1 3.9051 -3.4133 1.7638 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261075573.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:05 Heat of formation + Delta-G solvation = -6.996389 kcal Electronic energy + Delta-G solvation = -16106.258960 eV Core-core repulsion = 13449.665583 eV Total energy + Delta-G solvation = -2656.593377 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.093 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.01477 -37.91491 -37.37489 -35.70473 -33.78529 -31.08655 -30.45117 -28.52383 -26.95827 -25.60869 -23.79403 -22.60469 -21.18945 -18.60113 -17.98214 -17.11126 -16.78646 -16.53347 -16.04856 -15.33899 -14.97056 -14.62647 -14.42988 -14.37026 -14.03323 -13.41713 -13.26172 -13.23587 -12.92090 -12.88274 -12.64632 -12.54852 -12.30632 -12.18100 -11.77485 -11.61342 -11.50021 -11.20301 -10.57979 -9.85047 -9.57642 -9.36458 -8.21044 -6.33098 0.17304 0.25006 1.28264 1.40102 1.40628 1.53755 2.39778 2.59800 2.82109 3.12351 3.81951 3.93888 4.11835 4.27612 4.32937 4.39280 4.46353 4.60023 4.64231 4.69776 4.80295 4.83568 4.94601 4.95644 5.10220 5.20178 5.25569 5.48018 5.48176 5.68249 5.79949 5.82461 5.86388 6.20587 6.24679 6.84052 7.36823 8.90619 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.031352 B = 0.004756 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.879500 B = 5885.320782 C = 6250.909413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.509 5.509 3 C 0.029 3.971 4 C 0.090 3.910 5 C -0.144 4.144 6 C -0.064 4.064 7 C -0.066 4.066 8 C 0.038 3.962 9 C -0.542 4.542 10 H 0.064 0.936 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.965 3.035 14 H -0.260 1.260 15 H -0.279 1.279 16 H -0.278 1.278 17 C -0.116 4.116 18 C -0.101 4.101 19 C -0.035 4.035 20 Cl -0.056 7.056 21 H 0.025 0.975 22 H 0.097 0.903 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.029 0.971 27 H 0.122 0.878 28 H 0.071 0.929 29 H 0.062 0.938 30 H -0.013 1.013 31 H -0.007 1.007 32 H 0.263 0.737 33 H 0.142 0.858 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.117 3.940 -13.332 16.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.230 5.230 3 C -0.118 4.118 4 C -0.004 4.004 5 C -0.164 4.164 6 C -0.065 4.065 7 C -0.104 4.104 8 C 0.001 3.999 9 C -0.580 4.580 10 H 0.082 0.918 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.789 3.211 14 H -0.184 1.184 15 H -0.205 1.205 16 H -0.204 1.204 17 C -0.134 4.134 18 C -0.120 4.120 19 C -0.063 4.063 20 Cl -0.027 7.027 21 H 0.044 0.956 22 H 0.116 0.884 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.048 0.952 27 H 0.140 0.860 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.005 0.995 31 H 0.011 0.989 32 H 0.072 0.928 33 H 0.159 0.841 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.150 3.602 -13.929 17.051 hybrid contribution -0.926 0.334 1.531 1.820 sum 8.224 3.935 -12.399 15.390 Atomic orbital electron populations 1.22494 0.85186 1.02635 1.01611 1.59756 1.09064 1.15056 1.39122 1.22506 1.01031 0.86531 1.01708 1.18607 0.97566 0.94976 0.89287 1.21475 1.01407 1.01357 0.92147 1.20225 0.95264 0.95161 0.95885 1.20598 0.98651 1.00033 0.91089 1.18903 0.91826 0.94433 0.94765 1.21721 1.09589 1.26550 1.00175 0.91825 1.25974 0.96166 0.94926 1.02642 1.70116 1.15925 1.32047 1.39289 0.85403 0.78254 0.78334 0.79088 1.18379 1.20512 1.20397 1.21247 0.98420 0.96472 0.97259 1.21217 1.00209 1.00107 0.90462 1.20901 1.01619 0.97040 0.86723 1.98325 1.92846 1.90737 1.20832 0.95616 0.88414 0.92101 0.91213 0.88739 0.95241 0.85978 0.91020 0.91897 0.99485 0.98895 0.92782 0.84053 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.34 127.69 1.19 1.85 16 2 N -0.51 -13.10 4.39 -744.93 -3.27 -16.37 16 3 C 0.03 0.60 9.38 127.69 1.20 1.79 16 4 C 0.09 2.70 4.73 38.21 0.18 2.88 16 5 C -0.14 -4.75 8.22 22.39 0.18 -4.57 16 6 C -0.06 -2.28 5.13 -19.88 -0.10 -2.38 16 7 C -0.07 -2.68 5.28 29.85 0.16 -2.52 16 8 C 0.04 1.97 4.95 29.85 0.15 2.12 16 9 C -0.54 -30.41 9.11 25.60 0.23 -30.17 16 10 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 11 C 0.00 0.04 5.46 84.65 0.46 0.50 16 12 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 13 Si 0.96 43.73 29.54 68.60 2.03 45.75 16 14 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 17 C -0.12 -3.60 9.70 22.29 0.22 -3.38 16 18 C -0.10 -2.77 9.82 22.27 0.22 -2.55 16 19 C -0.04 -1.01 6.34 22.45 0.14 -0.87 16 20 Cl -0.06 -1.44 28.44 -2.72 -0.08 -1.51 16 21 H 0.03 0.66 7.13 -2.39 -0.02 0.64 16 22 H 0.10 1.80 8.12 -2.39 -0.02 1.78 16 23 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.09 1.53 8.12 -2.38 -0.02 1.51 16 26 H 0.03 0.63 7.34 -2.39 -0.02 0.62 16 27 H 0.12 4.01 7.02 -2.91 -0.02 3.99 16 28 H 0.07 2.73 8.08 -2.39 -0.02 2.71 16 29 H 0.06 2.46 8.08 -2.39 -0.02 2.44 16 30 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 31 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 33 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 34 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -63.45 303.08 4.27 -59.18 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 1.07 Total: 6.67 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 4.23 Total: -37.29 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -2.98 Total: -72.79 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.51 kcal Total: -63.45 4.27 -59.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075573.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.180 kcal (2) G-P(sol) polarization free energy of solvation -63.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds