Wall clock time and date at job start Mon Mar 30 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00252 * 2 1 4 4 H 1.48497 * 109.47379 * 270.00238 * 3 2 1 5 5 H 1.48503 * 109.46681 * 30.00125 * 3 2 1 6 6 H 1.48497 * 109.47501 * 149.99765 * 3 2 1 7 7 C 1.37887 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99627 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99927 * 179.97438 * 7 2 1 10 10 F 1.39904 * 109.46866 * 60.00590 * 9 7 2 11 11 F 1.39900 * 109.47239 * 300.00596 * 9 7 2 12 12 C 1.52994 * 109.47028 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.47521 * 180.02562 * 12 9 7 14 14 C 1.48916 * 110.99822 * 57.47675 * 13 12 9 15 15 C 1.51541 * 104.09536 * 154.21765 * 14 13 12 16 16 C 1.37986 * 132.18996 * 157.08636 * 15 14 13 17 17 C 1.38289 * 119.94119 * 180.02562 * 16 15 14 18 18 C 1.38258 * 120.03409 * 0.24888 * 17 16 15 19 19 C 1.38290 * 120.03990 * 359.48370 * 18 17 16 20 20 C 1.37982 * 119.93700 * 0.52153 * 19 18 17 21 21 C 1.48911 * 111.00476 * 170.00087 * 13 12 9 22 22 H 0.96993 * 120.00475 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47065 * 59.99926 * 12 9 7 24 24 H 1.09003 * 109.47236 * 300.00642 * 12 9 7 25 25 H 1.08997 * 110.50362 * 35.56052 * 14 13 12 26 26 H 1.08999 * 110.49993 * 272.86720 * 14 13 12 27 27 H 1.07998 * 120.02847 * 0.02562 * 16 15 14 28 28 H 1.08002 * 119.97904 * 179.97438 * 17 16 15 29 29 H 1.08008 * 119.97919 * 179.72250 * 18 17 16 30 30 H 1.07992 * 120.02860 * 180.23517 * 19 18 17 31 31 H 1.09000 * 110.50370 * 87.13269 * 21 13 12 32 32 H 1.09003 * 110.50278 * 324.44382 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 9 3.9782 -0.5339 1.1417 11 9 3.9774 -0.5352 -1.1429 12 6 4.0216 -2.6365 0.0001 13 7 5.4905 -2.6365 0.0001 14 6 6.0242 -1.8890 1.1723 15 6 7.3919 -2.4978 1.4068 16 6 8.5245 -2.0189 2.0328 17 6 9.6595 -2.8059 2.1029 18 6 9.6611 -4.0695 1.5417 19 6 8.5245 -4.5519 0.9191 20 6 7.3919 -3.7669 0.8489 21 6 6.0242 -4.0056 0.2416 22 1 -0.4850 0.8399 0.0004 23 1 3.6579 -3.1505 -0.8897 24 1 3.6585 -3.1502 0.8903 25 1 5.3856 -2.0379 2.0430 26 1 6.1133 -0.8278 0.9399 27 1 8.5246 -1.0303 2.4676 28 1 10.5464 -2.4315 2.5924 29 1 10.5495 -4.6816 1.5931 30 1 8.5248 -5.5404 0.4842 31 1 6.1134 -4.5518 -0.6975 32 1 5.3856 -4.5466 0.9399 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261360740.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:12 Heat of formation + Delta-G solvation = -47.993603 kcal Electronic energy + Delta-G solvation = -18717.241806 eV Core-core repulsion = 15507.073976 eV Total energy + Delta-G solvation = -3210.167830 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.62255 -45.45179 -40.16867 -36.77080 -32.95810 -31.66688 -31.36686 -28.65374 -27.27433 -25.60662 -22.77735 -21.25755 -21.12142 -20.37755 -17.54208 -16.39559 -16.27188 -15.99822 -15.42813 -15.04264 -14.96763 -14.29193 -13.70722 -13.58097 -13.27029 -13.15047 -12.94274 -12.49184 -12.41264 -12.11984 -11.97332 -11.82176 -11.32085 -11.21224 -11.00179 -10.82053 -10.67419 -10.53959 -9.51044 -9.04127 -8.89960 -8.86600 -8.82475 -8.09387 -6.41515 -4.65997 1.35216 1.40259 3.32332 3.36674 3.49260 3.76849 4.15987 4.28598 4.45375 4.67285 4.93832 4.99607 5.01932 5.06044 5.44351 5.47963 5.50469 5.59630 5.65048 5.81399 5.83038 5.92863 6.05793 6.14683 6.34442 6.43141 6.48248 6.60354 6.75265 6.89209 6.99398 7.01008 7.23242 8.02064 8.51553 9.14466 10.67289 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.045224 B = 0.005984 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.997503 B = 4677.640560 C = 5035.325614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.098 3.902 3 Si 0.881 3.119 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.243 1.243 7 C -0.587 4.587 8 H 0.097 0.903 9 C 0.371 3.629 10 F -0.226 7.226 11 F -0.219 7.219 12 C 0.020 3.980 13 N -0.496 5.496 14 C 0.067 3.933 15 C -0.092 4.092 16 C -0.103 4.103 17 C -0.121 4.121 18 C -0.126 4.126 19 C -0.102 4.102 20 C -0.100 4.100 21 C 0.070 3.930 22 H 0.273 0.727 23 H 0.102 0.898 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.461 -7.058 3.494 17.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.110 4.110 3 Si 0.707 3.293 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.166 1.166 7 C -0.624 4.624 8 H 0.115 0.885 9 C 0.334 3.666 10 F -0.208 7.208 11 F -0.201 7.201 12 C -0.109 4.109 13 N -0.219 5.219 14 C -0.060 4.060 15 C -0.093 4.093 16 C -0.121 4.121 17 C -0.139 4.139 18 C -0.144 4.144 19 C -0.120 4.120 20 C -0.100 4.100 21 C -0.058 4.058 22 H 0.083 0.917 23 H 0.120 0.880 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.116 0.884 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.109 0.891 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.430 -6.685 2.944 17.071 hybrid contribution 0.029 0.590 0.716 0.929 sum 15.459 -6.094 3.660 17.015 Atomic orbital electron populations 1.69882 1.06450 1.28276 1.45616 1.24922 0.94990 0.99960 0.91164 0.86937 0.81303 0.81816 0.79199 1.19982 1.21919 1.16604 1.21242 0.86406 0.96761 1.57951 0.88469 1.19015 0.93216 0.83913 0.70424 1.92856 1.90802 1.83720 1.53388 1.92806 1.91060 1.83344 1.52847 1.23244 0.86136 0.97845 1.03638 1.66411 1.08958 1.08206 1.38314 1.22242 0.90557 1.00074 0.93126 1.20895 0.95769 0.95511 0.97088 1.20491 0.91955 1.00011 0.99669 1.21046 0.97878 0.94603 1.00367 1.21018 0.97868 0.96256 0.99220 1.20420 0.91964 0.99517 1.00139 1.20671 0.95432 0.95097 0.98819 1.21958 0.91425 0.92271 1.00117 0.91721 0.87963 0.92088 0.90990 0.88422 0.86025 0.85995 0.86033 0.86193 0.89146 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.75 13.96 55.43 0.77 -24.98 16 2 C 0.10 2.83 5.47 -17.82 -0.10 2.73 16 3 Si 0.88 22.50 25.99 -169.99 -4.42 18.08 16 4 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.24 -6.13 5.49 56.52 0.31 -5.82 16 7 C -0.59 -16.29 9.21 -34.44 -0.32 -16.60 16 8 H 0.10 2.78 7.99 -52.49 -0.42 2.36 16 9 C 0.37 9.04 1.29 -27.89 -0.04 9.01 16 10 F -0.23 -5.51 10.69 2.25 0.02 -5.49 16 11 F -0.22 -5.62 14.95 2.25 0.03 -5.59 16 12 C 0.02 0.40 4.58 -3.83 -0.02 0.38 16 13 N -0.50 -9.06 5.59 -232.94 -1.30 -10.36 16 14 C 0.07 1.19 4.68 -3.44 -0.02 1.18 16 15 C -0.09 -1.42 6.28 -104.16 -0.65 -2.08 16 16 C -0.10 -1.36 10.04 -39.65 -0.40 -1.76 16 17 C -0.12 -1.36 10.05 -39.56 -0.40 -1.76 16 18 C -0.13 -1.37 10.05 -39.55 -0.40 -1.77 16 19 C -0.10 -1.23 10.04 -39.66 -0.40 -1.62 16 20 C -0.10 -1.44 6.28 -104.16 -0.65 -2.09 16 21 C 0.07 1.02 6.50 -3.45 -0.02 1.00 16 22 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 23 H 0.10 1.95 8.14 -51.93 -0.42 1.52 16 24 H 0.06 1.15 7.85 -51.93 -0.41 0.74 16 25 H 0.07 1.29 7.31 -51.93 -0.38 0.91 16 26 H 0.10 1.88 7.21 -51.93 -0.37 1.50 16 27 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 LS Contribution 270.27 15.07 4.07 4.07 Total: -1.00 -30.57 270.27 -7.97 -38.54 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -3.75 Total: -0.90 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -3.41 Total: -13.38 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.53 Total: -35.34 kcal Atomic # 9 Polarization: -11.13 SS G_CDS: 0.06 Total: -11.07 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.42 Total: 18.08 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.57 -7.97 -38.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360740.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.454 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds