Wall clock time and date at job start Mon Mar 30 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00252 * 2 1 4 4 H 1.48497 * 109.47379 * 270.00238 * 3 2 1 5 5 H 1.48503 * 109.46681 * 30.00125 * 3 2 1 6 6 H 1.48497 * 109.47501 * 149.99765 * 3 2 1 7 7 C 1.37887 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99627 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99927 * 179.97438 * 7 2 1 10 10 F 1.39904 * 109.46866 * 60.00590 * 9 7 2 11 11 F 1.39900 * 109.47239 * 300.00596 * 9 7 2 12 12 C 1.52994 * 109.47028 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.47521 * 180.02562 * 12 9 7 14 14 C 1.48916 * 110.99822 * 57.47675 * 13 12 9 15 15 C 1.51541 * 104.09536 * 154.21765 * 14 13 12 16 16 C 1.37986 * 132.18996 * 157.08636 * 15 14 13 17 17 C 1.38289 * 119.94119 * 180.02562 * 16 15 14 18 18 C 1.38258 * 120.03409 * 0.24888 * 17 16 15 19 19 C 1.38290 * 120.03990 * 359.48370 * 18 17 16 20 20 C 1.37982 * 119.93700 * 0.52153 * 19 18 17 21 21 C 1.48911 * 111.00476 * 170.00087 * 13 12 9 22 22 H 0.96993 * 120.00475 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47065 * 59.99926 * 12 9 7 24 24 H 1.09003 * 109.47236 * 300.00642 * 12 9 7 25 25 H 1.08997 * 110.50362 * 35.56052 * 14 13 12 26 26 H 1.08999 * 110.49993 * 272.86720 * 14 13 12 27 27 H 1.07998 * 120.02847 * 0.02562 * 16 15 14 28 28 H 1.08002 * 119.97904 * 179.97438 * 17 16 15 29 29 H 1.08008 * 119.97919 * 179.72250 * 18 17 16 30 30 H 1.07992 * 120.02860 * 180.23517 * 19 18 17 31 31 H 1.09000 * 110.50370 * 87.13269 * 21 13 12 32 32 H 1.09003 * 110.50278 * 324.44382 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 9 3.9782 -0.5339 1.1417 11 9 3.9774 -0.5352 -1.1429 12 6 4.0216 -2.6365 0.0001 13 7 5.4905 -2.6365 0.0001 14 6 6.0242 -1.8890 1.1723 15 6 7.3919 -2.4978 1.4068 16 6 8.5245 -2.0189 2.0328 17 6 9.6595 -2.8059 2.1029 18 6 9.6611 -4.0695 1.5417 19 6 8.5245 -4.5519 0.9191 20 6 7.3919 -3.7669 0.8489 21 6 6.0242 -4.0056 0.2416 22 1 -0.4850 0.8399 0.0004 23 1 3.6579 -3.1505 -0.8897 24 1 3.6585 -3.1502 0.8903 25 1 5.3856 -2.0379 2.0430 26 1 6.1133 -0.8278 0.9399 27 1 8.5246 -1.0303 2.4676 28 1 10.5464 -2.4315 2.5924 29 1 10.5495 -4.6816 1.5931 30 1 8.5248 -5.5404 0.4842 31 1 6.1134 -4.5518 -0.6975 32 1 5.3856 -4.5466 0.9399 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261360740.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:12 Heat of formation + Delta-G solvation = -67.653215 kcal Electronic energy + Delta-G solvation = -18718.094310 eV Core-core repulsion = 15507.073976 eV Total energy + Delta-G solvation = -3211.020334 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.60687 -47.45317 -41.25903 -37.93673 -35.10659 -33.07521 -32.35259 -30.31731 -28.42775 -27.27576 -24.21379 -22.46480 -22.22494 -21.94088 -19.62085 -18.14510 -17.82808 -17.41610 -16.75808 -16.64785 -16.24229 -15.76342 -15.46369 -14.95610 -14.81848 -14.71086 -14.43876 -14.04142 -13.88235 -13.76745 -13.38018 -13.27983 -12.91567 -12.85975 -12.70455 -12.59705 -12.07600 -11.70186 -11.59828 -11.10685 -10.90789 -10.09544 -9.76949 -9.28194 -8.63223 -6.90449 0.38819 0.45882 1.27183 1.28390 1.43345 2.16654 2.73226 2.78929 2.82154 3.17306 3.49682 3.52335 3.95372 3.99504 4.11057 4.22154 4.37979 4.39988 4.46124 4.58014 4.60616 4.72642 4.74448 4.84909 5.04171 5.08068 5.13833 5.40838 5.51227 5.58582 5.72314 5.77624 5.85811 6.08658 6.27052 6.92467 8.49289 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.045224 B = 0.005984 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.997503 B = 4677.640560 C = 5035.325614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.054 3.946 3 Si 0.926 3.074 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.242 1.242 7 C -0.596 4.596 8 H 0.080 0.920 9 C 0.366 3.634 10 F -0.227 7.227 11 F -0.227 7.227 12 C 0.032 3.968 13 N -0.511 5.511 14 C 0.070 3.930 15 C -0.122 4.122 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.119 4.119 19 C -0.103 4.103 20 C -0.115 4.115 21 C 0.071 3.929 22 H 0.279 0.721 23 H 0.109 0.891 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.128 0.872 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.146 0.854 31 H 0.106 0.894 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.131 -8.042 3.813 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.152 4.152 3 Si 0.750 3.250 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.165 1.165 7 C -0.633 4.633 8 H 0.098 0.902 9 C 0.330 3.670 10 F -0.208 7.208 11 F -0.208 7.208 12 C -0.097 4.097 13 N -0.234 5.234 14 C -0.057 4.057 15 C -0.122 4.122 16 C -0.133 4.133 17 C -0.137 4.137 18 C -0.136 4.136 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.055 4.055 22 H 0.089 0.911 23 H 0.128 0.872 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.146 0.854 28 H 0.170 0.830 29 H 0.175 0.825 30 H 0.164 0.836 31 H 0.124 0.876 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.106 -7.677 3.267 19.936 hybrid contribution -0.750 0.835 0.634 1.289 sum 17.356 -6.842 3.900 19.059 Atomic orbital electron populations 1.69948 1.07552 1.29358 1.46946 1.25622 0.95645 1.02792 0.91104 0.86227 0.80439 0.79057 0.79270 1.19861 1.20508 1.16526 1.21525 0.88509 0.96093 1.57195 0.90219 1.19095 0.91691 0.86271 0.69955 1.92843 1.90628 1.84027 1.53349 1.92776 1.90948 1.83793 1.53303 1.23014 0.87747 0.94541 1.04357 1.66355 1.07401 1.10731 1.38904 1.22043 0.92351 0.98905 0.92426 1.20810 0.95351 0.96416 0.99653 1.20740 0.92102 1.00858 0.99617 1.21440 0.97964 0.94552 0.99695 1.21494 0.98556 0.96235 0.97355 1.20778 0.91268 1.00338 0.99758 1.20757 0.95997 0.95244 0.99532 1.22009 0.91921 0.90314 1.01291 0.91148 0.87246 0.91388 0.92217 0.90931 0.85386 0.82980 0.82522 0.83614 0.87559 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.20 13.96 21.45 0.30 -53.90 16 2 C 0.05 3.12 5.47 84.66 0.46 3.59 16 3 Si 0.93 46.37 25.99 68.60 1.78 48.15 16 4 H -0.27 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.24 -12.00 5.49 99.48 0.55 -11.45 16 7 C -0.60 -33.63 9.21 25.60 0.24 -33.39 16 8 H 0.08 4.68 7.99 -2.91 -0.02 4.65 16 9 C 0.37 18.01 1.29 29.85 0.04 18.05 16 10 F -0.23 -11.18 10.69 44.97 0.48 -10.70 16 11 F -0.23 -11.66 14.95 44.97 0.67 -10.98 16 12 C 0.03 1.29 4.58 86.30 0.40 1.69 16 13 N -0.51 -18.50 5.59 -890.90 -4.98 -23.49 16 14 C 0.07 2.53 4.68 85.43 0.40 2.93 16 15 C -0.12 -3.67 6.28 -19.56 -0.12 -3.80 16 16 C -0.11 -2.87 10.04 22.22 0.22 -2.64 16 17 C -0.12 -2.27 10.05 22.29 0.22 -2.04 16 18 C -0.12 -2.08 10.05 22.29 0.22 -1.85 16 19 C -0.10 -2.12 10.04 22.22 0.22 -1.90 16 20 C -0.11 -3.10 6.28 -19.57 -0.12 -3.22 16 21 C 0.07 2.00 6.50 85.43 0.56 2.55 16 22 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 23 H 0.11 4.14 8.14 -2.39 -0.02 4.12 16 24 H 0.07 2.57 7.85 -2.39 -0.02 2.55 16 25 H 0.06 2.21 7.31 -2.39 -0.02 2.19 16 26 H 0.07 2.88 7.21 -2.39 -0.02 2.87 16 27 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 28 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 30 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 31 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.07 1.84 7.75 -2.39 -0.02 1.82 16 Total: -1.00 -65.69 270.27 1.95 -63.74 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 0.96 Total: 7.23 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 2.74 Total: -20.05 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -4.68 Total: -77.39 kcal Atomic # 9 Polarization: -22.84 SS G_CDS: 1.15 Total: -21.68 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.78 Total: 48.15 kcal Total: -65.69 1.95 -63.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360740.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.912 kcal (2) G-P(sol) polarization free energy of solvation -65.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds