Wall clock time and date at job start Mon Mar 30 2020 06:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48503 * 109.47034 * 269.99946 * 3 2 1 5 5 H 1.48496 * 109.47160 * 29.99564 * 3 2 1 6 6 H 1.48498 * 109.47023 * 150.00025 * 3 2 1 7 7 C 1.38657 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00068 * 0.02562 * 7 2 1 9 9 O 1.34831 * 119.99564 * 179.97438 * 7 2 1 10 10 C 1.35746 * 116.99929 * 185.05913 * 9 7 2 11 11 C 1.38880 * 120.06961 * 354.46289 * 10 9 7 12 12 C 1.38094 * 119.93221 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06876 * 0.02706 * 12 11 10 14 14 C 1.50704 * 119.93252 * 179.97438 * 13 12 11 15 15 N 1.46896 * 109.47411 * 89.99526 * 14 13 12 16 16 C 1.46896 * 111.00173 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47008 * 179.97438 * 16 15 14 18 18 C 1.53007 * 109.47068 * 180.02562 * 17 16 15 19 19 F 1.39897 * 109.47277 * 180.02562 * 18 17 16 20 20 C 1.38299 * 120.14050 * 0.24993 * 13 12 11 21 21 C 1.38109 * 120.06519 * 359.45219 * 20 13 12 22 22 H 0.97005 * 120.00088 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.03494 * 0.02562 * 11 10 9 24 24 H 1.08002 * 119.96924 * 180.02562 * 12 11 10 25 25 H 1.08999 * 109.46883 * 329.99644 * 14 13 12 26 26 H 1.08995 * 109.46972 * 210.00225 * 14 13 12 27 27 H 1.00900 * 111.00192 * 303.95784 * 15 14 13 28 28 H 1.08991 * 109.47177 * 300.00250 * 16 15 14 29 29 H 1.09003 * 109.46825 * 60.00389 * 16 15 14 30 30 H 1.09000 * 109.47632 * 300.00088 * 17 16 15 31 31 H 1.09003 * 109.46864 * 60.00591 * 17 16 15 32 32 H 1.09000 * 109.46864 * 300.00434 * 18 17 16 33 33 H 1.08999 * 109.46963 * 59.99982 * 18 17 16 34 34 H 1.07996 * 119.97034 * 179.70977 * 20 13 12 35 35 H 1.08001 * 120.03309 * 180.27484 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9733 -2.4057 -0.1061 11 6 3.2234 -3.5745 -0.0920 12 6 3.8532 -4.7987 -0.1996 13 6 5.2295 -4.8616 -0.3207 14 6 5.9138 -6.1993 -0.4373 15 7 6.0175 -6.5745 -1.8538 16 6 6.6815 -7.8759 -2.0064 17 6 6.7702 -8.2320 -3.4917 18 6 7.4612 -9.5879 -3.6507 19 9 7.5428 -9.9133 -5.0088 20 6 5.9797 -3.6998 -0.3292 21 6 5.3552 -2.4722 -0.2282 22 1 -0.4850 0.8401 -0.0004 23 1 2.1486 -3.5261 0.0029 24 1 3.2706 -5.7080 -0.1892 25 1 5.3335 -6.9519 0.0963 26 1 6.9120 -6.1357 -0.0042 27 1 5.1099 -6.5773 -2.2945 28 1 7.6850 -7.8235 -1.5844 29 1 6.1068 -8.6405 -1.4836 30 1 5.7664 -8.2845 -3.9134 31 1 7.3446 -7.4675 -4.0149 32 1 8.4649 -9.5358 -3.2289 33 1 6.8864 -10.3521 -3.1275 34 1 7.0546 -3.7523 -0.4192 35 1 5.9411 -1.5650 -0.2394 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304284567.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:09 Heat of formation + Delta-G solvation = -83.847670 kcal Electronic energy + Delta-G solvation = -17359.959466 eV Core-core repulsion = 14271.697192 eV Total energy + Delta-G solvation = -3088.262274 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.54156 -40.90119 -38.85342 -37.18381 -34.51385 -33.59614 -31.80785 -30.77778 -27.66840 -26.26604 -24.32981 -23.64328 -22.53802 -21.80350 -19.82158 -19.11107 -17.48774 -17.04972 -16.70063 -16.42749 -16.23762 -16.07121 -15.68921 -15.56594 -15.27638 -14.90156 -14.48880 -14.41395 -14.14565 -13.91974 -13.45672 -13.06580 -12.62052 -12.52530 -12.35183 -12.28696 -12.19955 -11.95512 -11.75953 -11.50983 -11.27105 -10.90543 -9.79540 -9.36023 -8.97483 -8.50721 -6.23280 0.58185 0.62822 1.31257 1.35396 1.51887 2.27849 2.72362 2.99530 3.15010 3.34710 3.86913 3.96871 4.04879 4.06131 4.12133 4.20139 4.28094 4.44499 4.50716 4.60197 4.71465 4.76587 4.77520 4.84889 5.01310 5.10768 5.27113 5.28867 5.37564 5.58475 5.76492 5.81466 5.91271 6.11007 6.26956 6.44045 6.83834 7.58819 8.61001 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.042974 B = 0.003242 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.404448 B = 8633.632861 C = 8741.799061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.399 4.399 8 H 0.081 0.919 9 O -0.246 6.246 10 C 0.119 3.881 11 C -0.239 4.239 12 C -0.067 4.067 13 C -0.151 4.151 14 C 0.121 3.879 15 N -0.699 5.699 16 C 0.064 3.936 17 C -0.148 4.148 18 C 0.060 3.940 19 F -0.240 7.240 20 C -0.050 4.050 21 C -0.195 4.195 22 H 0.285 0.715 23 H 0.106 0.894 24 H 0.133 0.867 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.341 0.659 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.151 0.849 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.492 -16.600 -2.645 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.098 0.902 9 O -0.154 6.154 10 C 0.070 3.930 11 C -0.258 4.258 12 C -0.086 4.086 13 C -0.152 4.152 14 C -0.008 4.008 15 N -0.330 5.330 16 C -0.065 4.065 17 C -0.187 4.187 18 C 0.005 3.995 19 F -0.221 7.221 20 C -0.068 4.068 21 C -0.214 4.214 22 H 0.094 0.906 23 H 0.124 0.876 24 H 0.151 0.849 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.159 0.841 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.169 0.831 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 15.979 -15.927 -2.745 22.727 hybrid contribution -1.397 0.261 0.187 1.434 sum 14.582 -15.666 -2.558 21.554 Atomic orbital electron populations 1.69730 1.06924 1.29613 1.50256 1.25290 0.95885 1.02196 0.95525 0.85207 0.78795 0.77367 0.79283 1.19100 1.19163 1.18685 1.20709 0.78155 0.96101 1.52613 0.90191 1.83515 1.21188 1.27543 1.83126 1.19702 0.93250 0.85080 0.94948 1.21259 1.00097 0.93299 1.11142 1.20940 0.94704 0.96053 0.96857 1.19707 0.92671 0.95902 1.06965 1.20648 1.00168 0.91243 0.88694 1.60483 1.27432 1.30649 1.14461 1.21845 1.00321 0.89249 0.95082 1.22076 1.01939 0.97070 0.97569 1.22123 1.03613 0.97216 0.76567 1.92730 1.97967 1.94162 1.37269 1.20933 1.00373 0.89998 0.95482 1.20549 0.90548 0.99886 1.10378 0.90565 0.87580 0.84874 0.93698 0.89110 0.84104 0.89617 0.93818 0.91542 0.91058 0.88842 0.89090 0.83129 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.62 13.96 21.61 0.30 -55.32 16 2 C 0.01 0.54 5.49 84.83 0.47 1.01 16 3 Si 0.97 45.76 28.62 68.60 1.96 47.73 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.40 -23.76 9.95 67.92 0.68 -23.08 16 8 H 0.08 4.98 5.44 -2.92 -0.02 4.96 16 9 O -0.25 -13.50 8.59 -22.71 -0.19 -13.70 16 10 C 0.12 5.60 6.65 22.58 0.15 5.75 16 11 C -0.24 -10.44 9.17 22.39 0.21 -10.23 16 12 C -0.07 -2.23 9.69 22.25 0.22 -2.02 16 13 C -0.15 -4.31 5.40 -19.83 -0.11 -4.42 16 14 C 0.12 2.40 5.81 85.56 0.50 2.90 16 15 N -0.70 -13.24 6.49 -517.96 -3.36 -16.60 16 16 C 0.06 0.83 5.69 86.30 0.49 1.32 16 17 C -0.15 -2.00 5.93 30.60 0.18 -1.82 16 18 C 0.06 0.67 7.55 71.98 0.54 1.21 16 19 F -0.24 -4.48 17.36 44.97 0.78 -3.70 16 20 C -0.05 -1.50 9.69 22.25 0.22 -1.28 16 21 C -0.19 -7.43 9.99 22.39 0.22 -7.21 16 22 H 0.28 15.69 8.31 -92.70 -0.77 14.92 16 23 H 0.11 5.13 5.64 -2.91 -0.02 5.12 16 24 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 25 H 0.04 0.80 8.08 -2.39 -0.02 0.78 16 26 H 0.09 1.55 8.08 -2.39 -0.02 1.54 16 27 H 0.34 6.83 8.72 -89.69 -0.78 6.05 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -67.22 304.64 3.56 -63.66 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.31 Total: 15.79 kcal Atomic # 6 Polarization: -41.63 SS G_CDS: 3.76 Total: -37.87 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -3.06 Total: -71.91 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.19 Total: -13.70 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.78 Total: -3.70 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.96 Total: 47.73 kcal Total: -67.22 3.56 -63.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304284567.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.185 kcal (2) G-P(sol) polarization free energy of solvation -67.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds