Wall clock time and date at job start Mon Mar 30 2020 07:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33389 * 125.20134 * 2 1 4 4 C 1.38433 * 114.92022 * 180.26674 * 3 2 1 5 5 C 1.50693 * 122.53989 * 180.02562 * 4 3 2 6 6 C 1.53011 * 109.46953 * 264.97559 * 5 4 3 7 7 N 1.46901 * 109.46909 * 179.97438 * 6 5 4 8 8 C 1.46898 * 110.99478 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.47365 * 324.99907 * 8 7 6 10 10 C 1.52999 * 109.47099 * 85.00358 * 8 7 6 11 11 C 1.50697 * 109.46882 * 205.00181 * 8 7 6 12 12 H 1.07998 * 120.00277 * 0.02562 * 11 8 7 13 13 C 1.37882 * 120.00299 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99689 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 120.00431 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.46798 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46682 * 120.00308 * 15 13 11 18 18 H 1.48493 * 109.47220 * 240.00193 * 15 13 11 19 19 C 1.33388 * 114.91766 * 0.02562 * 4 3 2 20 20 C 1.50706 * 125.19956 * 180.02562 * 19 4 3 21 21 S 1.75879 * 109.59837 * 0.02562 * 19 4 3 22 22 H 1.09004 * 109.47138 * 179.71625 * 1 2 3 23 23 H 1.08999 * 109.47349 * 299.71151 * 1 2 3 24 24 H 1.09001 * 109.47374 * 59.71231 * 1 2 3 25 25 H 1.07998 * 122.54399 * 0.25181 * 3 2 1 26 26 H 1.09007 * 109.47356 * 24.97383 * 5 4 3 27 27 H 1.08998 * 109.47398 * 144.97985 * 5 4 3 28 28 H 1.08998 * 109.47113 * 300.00233 * 6 5 4 29 29 H 1.08998 * 109.46720 * 60.00011 * 6 5 4 30 30 H 1.00897 * 111.00077 * 56.05008 * 7 6 5 31 31 H 1.09004 * 109.47205 * 60.00016 * 10 8 7 32 32 H 1.09003 * 109.47368 * 179.97438 * 10 8 7 33 33 H 1.08998 * 109.47355 * 299.99525 * 10 8 7 34 34 H 0.96999 * 120.00051 * 179.97438 * 14 13 11 35 35 H 1.09004 * 109.46812 * 180.02562 * 20 19 4 36 36 H 1.09006 * 109.46982 * 299.99890 * 20 19 4 37 37 H 1.08994 * 109.46987 * 60.00158 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8429 -0.0058 5 6 4.6622 1.9482 -0.0062 6 6 5.0962 2.2409 -1.4440 7 7 6.0943 3.3188 -1.4444 8 6 6.5345 3.6279 -2.8113 9 1 6.5588 2.7116 -3.4012 10 6 5.5596 4.6196 -3.4492 11 6 7.9132 4.2351 -2.7697 12 1 8.4125 4.3767 -1.8227 13 6 8.5376 4.6088 -3.9409 14 7 7.9297 4.4358 -5.0942 15 14 10.2462 5.3620 -3.8893 16 1 10.7064 5.4489 -2.4801 17 1 11.1852 4.5124 -4.6649 18 1 10.2052 6.7230 -4.4819 19 6 3.9750 -0.4477 -0.0111 20 6 5.3860 -0.9770 -0.0175 21 16 2.5209 -1.4372 -0.0095 22 1 -0.3633 -1.0277 -0.0051 23 1 -0.3634 0.5093 0.8925 24 1 -0.3634 0.5183 -0.8874 25 1 1.8669 2.0895 0.0040 26 1 4.2275 2.8466 0.4321 27 1 5.5287 1.6409 0.5793 28 1 5.5308 1.3425 -1.8823 29 1 4.2297 2.5482 -2.0295 30 1 6.8794 3.0848 -0.8555 31 1 5.5354 5.5359 -2.8593 32 1 5.8865 4.8493 -4.4633 33 1 4.5624 4.1804 -3.4793 34 1 8.3688 4.6990 -5.9181 35 1 5.3652 -2.0668 -0.0214 36 1 5.9038 -0.6206 -0.9081 37 1 5.9096 -0.6264 0.8719 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308858087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:43 Heat of formation + Delta-G solvation = 8.720216 kcal Electronic energy + Delta-G solvation = -16166.055984 eV Core-core repulsion = 13648.020931 eV Total energy + Delta-G solvation = -2518.035053 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.71449 -35.93149 -33.62752 -32.49144 -30.36340 -29.29490 -27.14477 -25.19993 -24.34152 -22.63871 -20.87689 -19.74093 -18.10910 -17.02097 -16.43238 -15.12441 -14.70278 -14.47395 -14.26058 -13.66526 -13.47030 -13.26314 -13.14870 -12.91472 -12.53613 -12.19234 -12.09262 -11.79658 -11.46716 -11.25543 -11.07805 -10.91179 -10.75239 -10.64392 -10.51216 -10.16728 -10.07387 -9.87057 -8.79763 -8.46529 -8.37335 -8.15780 -7.23281 -6.01259 -4.07670 1.05072 1.65669 2.01458 2.79047 3.29260 3.37072 3.41284 4.41223 4.76218 4.94359 5.13329 5.23739 5.27840 5.31865 5.39171 5.54223 5.60642 5.65167 5.75263 5.78813 5.91209 5.99712 6.10247 6.22182 6.35299 6.54039 6.64032 6.78031 6.92546 7.17248 7.26871 7.53709 7.79994 7.92582 8.29829 8.41974 8.70606 9.03827 9.58308 11.05138 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.038652 B = 0.004042 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.238013 B = 6924.943699 C = 7260.570181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.187 4.187 3 C -0.125 4.125 4 C -0.093 4.093 5 C -0.058 4.058 6 C 0.070 3.930 7 N -0.690 5.690 8 C 0.211 3.789 9 H 0.000 1.000 10 C -0.124 4.124 11 C -0.517 4.517 12 H 0.060 0.940 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.178 4.178 20 C -0.080 4.080 21 S 0.071 5.929 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.138 0.862 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.018 0.982 29 H 0.062 0.938 30 H 0.329 0.671 31 H 0.031 0.969 32 H 0.080 0.920 33 H 0.003 0.997 34 H 0.260 0.740 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.351 -10.565 10.297 18.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.303 4.303 3 C -0.155 4.155 4 C -0.105 4.105 5 C -0.098 4.098 6 C -0.060 4.060 7 N -0.321 5.321 8 C 0.103 3.897 9 H 0.017 0.983 10 C -0.182 4.182 11 C -0.556 4.556 12 H 0.078 0.922 13 C -0.141 4.141 14 N -0.529 5.529 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.295 4.295 20 C -0.139 4.139 21 S 0.336 5.664 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.156 0.844 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.022 0.978 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.092 -11.608 10.094 19.567 hybrid contribution 1.665 1.129 -0.349 2.041 sum -10.427 -10.480 9.745 17.706 Atomic orbital electron populations 1.20285 0.88084 1.02492 1.02847 1.24309 0.99584 0.95529 1.10913 1.19985 0.92490 0.99285 1.03763 1.18855 0.94708 0.94139 1.02768 1.20339 0.95956 0.95142 0.98351 1.21802 0.96931 0.93126 0.94174 1.60721 1.16467 1.40024 1.14843 1.19098 0.93428 0.94040 0.83095 0.98255 1.21706 0.95133 0.98643 1.02736 1.21314 1.00082 1.41202 0.92976 0.92160 1.24931 0.97989 0.95734 0.95418 1.69914 1.37504 1.47956 0.97528 0.86472 0.84139 0.78892 0.78083 1.19738 1.21123 1.20974 1.24205 0.98612 0.95760 1.10908 1.20324 0.89953 1.00295 1.03327 1.84027 0.97162 1.10159 1.75087 0.91778 0.90786 0.90667 0.84381 0.90511 0.91456 0.96396 0.91932 0.85414 0.94994 0.90179 0.97757 0.93009 0.91904 0.90239 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.38 36.00 0.37 -0.32 16 2 C -0.19 -2.23 6.51 -36.01 -0.23 -2.47 16 3 C -0.13 -1.65 9.83 -41.20 -0.41 -2.06 16 4 C -0.09 -1.32 5.06 -106.25 -0.54 -1.86 16 5 C -0.06 -0.87 5.39 -27.88 -0.15 -1.02 16 6 C 0.07 1.29 5.47 -3.82 -0.02 1.27 16 7 N -0.69 -14.90 6.30 -107.95 -0.68 -15.58 16 8 C 0.21 5.45 2.60 -68.87 -0.18 5.27 16 9 H 0.00 -0.01 7.80 -51.93 -0.41 -0.41 16 10 C -0.12 -3.16 9.19 37.16 0.34 -2.82 16 11 C -0.52 -14.32 8.59 -34.44 -0.30 -14.62 16 12 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 13 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 14 N -0.89 -25.71 11.32 55.43 0.63 -25.09 16 15 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C -0.18 -2.39 6.50 -36.00 -0.23 -2.62 16 20 C -0.08 -0.94 9.53 36.01 0.34 -0.60 16 21 S 0.07 0.85 23.31 -107.50 -2.51 -1.65 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 26 H 0.08 1.15 8.11 -51.92 -0.42 0.73 16 27 H 0.07 0.95 7.52 -51.93 -0.39 0.56 16 28 H 0.02 0.34 7.39 -51.93 -0.38 -0.04 16 29 H 0.06 1.22 7.43 -51.93 -0.39 0.84 16 30 H 0.33 6.85 8.22 -39.29 -0.32 6.52 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 33 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.01 7.48 -51.93 -0.39 0.62 16 37 H 0.08 0.81 7.96 -51.93 -0.41 0.40 16 LS Contribution 316.28 15.07 4.77 4.77 Total: -1.00 -29.23 316.28 -9.79 -39.02 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.88 Total: 2.44 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -1.09 Total: -20.23 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.05 Total: -40.66 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.23 -9.79 -39.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308858087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.739 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds