Wall clock time and date at job start Mon Mar 30 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00261 * 2 1 4 4 H 1.48496 * 109.47029 * 89.99514 * 3 2 1 5 5 H 1.48500 * 109.47015 * 329.99948 * 3 2 1 6 6 H 1.48496 * 109.47122 * 210.00144 * 3 2 1 7 7 C 1.37883 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00382 * 5.43076 * 7 2 1 9 9 C 1.50705 * 119.99517 * 185.43342 * 7 2 1 10 10 H 1.08992 * 109.47248 * 305.19477 * 9 7 2 11 11 N 1.46900 * 109.47089 * 65.19763 * 9 7 2 12 12 C 1.50698 * 109.46712 * 185.19435 * 9 7 2 13 13 C 1.38150 * 119.85073 * 264.72446 * 12 9 7 14 14 C 1.38368 * 119.93640 * 179.71813 * 13 12 9 15 15 F 1.35095 * 120.07090 * 180.30815 * 14 13 12 16 16 C 1.38586 * 119.85675 * 0.59462 * 14 13 12 17 17 F 1.35098 * 119.92183 * 179.69610 * 16 14 13 18 18 C 1.38607 * 120.14810 * 359.67115 * 16 14 13 19 19 C 1.38270 * 119.85738 * 0.02562 * 18 16 14 20 20 C 1.51385 * 109.73525 * 179.97438 * 19 18 16 21 21 C 1.54349 * 105.17736 * 342.81041 * 20 19 18 22 22 C 1.51365 * 130.38131 * 180.02562 * 18 16 14 23 23 H 0.96995 * 119.99637 * 174.98241 * 1 2 3 24 24 H 1.00908 * 110.99911 * 293.20218 * 11 9 7 25 25 H 1.00893 * 111.00619 * 57.15439 * 11 9 7 26 26 H 1.07996 * 120.03147 * 0.02562 * 13 12 9 27 27 H 1.09006 * 110.29940 * 101.73181 * 20 19 18 28 28 H 1.08999 * 110.30389 * 223.88447 * 20 19 18 29 29 H 1.08996 * 110.81754 * 268.13831 * 21 20 19 30 30 H 1.08995 * 110.98755 * 144.66457 * 21 20 19 31 31 H 1.09003 * 110.29688 * 316.13834 * 22 18 16 32 32 H 1.08991 * 110.30876 * 78.28927 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 1.4000 5 1 1.4467 2.6526 -0.7001 6 1 3.5467 1.4401 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4682 -2.1273 -0.0895 9 6 3.5065 -1.1970 0.1231 10 1 3.9363 -0.5660 -0.6548 11 7 3.8903 -0.6777 1.4425 12 6 4.0204 -2.6052 -0.0314 13 6 4.2609 -3.3763 1.0894 14 6 4.7272 -4.6715 0.9494 15 9 4.9573 -5.4300 2.0434 16 6 4.9633 -5.1869 -0.3152 17 9 5.4244 -6.4492 -0.4531 18 6 4.7269 -4.4103 -1.4387 19 6 4.2550 -3.1186 -1.2958 20 6 4.0801 -2.4844 -2.6592 21 6 4.9042 -3.3644 -3.6229 22 6 4.9006 -4.7322 -2.9075 23 1 -0.4849 -0.8368 -0.0735 24 1 3.6549 0.2997 1.5289 25 1 3.4661 -1.2183 2.1813 26 1 4.0803 -2.9703 2.0737 27 1 3.0287 -2.4906 -2.9471 28 1 4.4658 -1.4650 -2.6545 29 1 5.9200 -2.9823 -3.7235 30 1 4.4204 -3.4356 -4.5970 31 1 5.8468 -5.2476 -3.0724 32 1 4.0699 -5.3423 -3.2619 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309550147.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:37 Heat of formation + Delta-G solvation = -77.611714 kcal Electronic energy + Delta-G solvation = -18697.875607 eV Core-core repulsion = 15486.423440 eV Total energy + Delta-G solvation = -3211.452167 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.06110 -48.14018 -39.79668 -36.00670 -34.33158 -32.00528 -30.09944 -28.68036 -26.96652 -25.91444 -23.05450 -21.44874 -21.03779 -19.44774 -17.91953 -17.15314 -17.02548 -16.27050 -16.04198 -15.17259 -14.96961 -14.56286 -14.05012 -13.92684 -13.68841 -13.28963 -12.89367 -12.79150 -12.48035 -12.30387 -11.94177 -11.64962 -11.40667 -11.09543 -10.95486 -10.74348 -10.46876 -10.38709 -10.04029 -9.33230 -8.75581 -8.30187 -8.10341 -7.71335 -6.59604 -4.39156 1.39934 1.47417 3.18323 3.26778 3.39258 3.82693 4.09896 4.24114 4.56860 4.70002 4.87087 5.03797 5.13098 5.30098 5.32044 5.36805 5.65320 5.80172 5.85726 5.90602 5.96310 6.11599 6.29669 6.33939 6.35990 6.47043 6.57791 6.65724 7.11189 7.24970 7.58102 8.04803 8.16052 8.27969 8.66637 9.35182 10.71145 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.023546 B = 0.007901 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.874049 B = 3543.012852 C = 4253.869111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.031 3.969 3 Si 1.045 2.955 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.619 4.619 8 H 0.059 0.941 9 C 0.206 3.794 10 H 0.059 0.941 11 N -0.853 5.853 12 C 0.010 3.990 13 C -0.119 4.119 14 C 0.061 3.939 15 F -0.137 7.137 16 C 0.050 3.950 17 F -0.141 7.141 18 C -0.114 4.114 19 C -0.073 4.073 20 C -0.076 4.076 21 C -0.119 4.119 22 C -0.072 4.072 23 H 0.270 0.730 24 H 0.324 0.676 25 H 0.331 0.669 26 H 0.146 0.854 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.413 -5.417 -4.206 11.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.175 4.175 3 Si 0.873 3.127 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.659 4.659 8 H 0.077 0.923 9 C 0.097 3.903 10 H 0.076 0.924 11 N -0.385 5.385 12 C 0.009 3.991 13 C -0.138 4.138 14 C 0.041 3.959 15 F -0.116 7.116 16 C 0.030 3.970 17 F -0.120 7.120 18 C -0.115 4.115 19 C -0.074 4.074 20 C -0.113 4.113 21 C -0.157 4.157 22 C -0.109 4.109 23 H 0.081 0.919 24 H 0.138 0.862 25 H 0.143 0.857 26 H 0.163 0.837 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.982 -4.032 -4.334 11.606 hybrid contribution -0.913 -2.017 0.442 2.258 sum 9.069 -6.049 -3.892 11.575 Atomic orbital electron populations 1.70797 1.06711 1.30925 1.44888 1.25841 0.96416 1.02381 0.92887 0.83959 0.75411 0.75718 0.77598 1.20649 1.21048 1.19976 1.22582 0.90622 0.95581 1.57085 0.92309 1.18507 0.94809 0.87751 0.89226 0.92386 1.59727 1.66258 1.06717 1.05774 1.19620 0.91988 0.97496 0.90040 1.20784 1.01114 0.90734 1.01139 1.17498 1.06098 0.91101 0.81229 1.91464 1.92748 1.75462 1.51904 1.17039 1.06930 0.80840 0.92202 1.91432 1.86908 1.37074 1.96589 1.20339 1.01895 0.94813 0.94465 1.20246 0.98467 0.93583 0.95118 1.20988 1.01400 0.99209 0.89682 1.22325 1.00697 0.94298 0.98361 1.20939 1.02332 0.98391 0.89215 0.91928 0.86210 0.85698 0.83674 0.89293 0.90187 0.90984 0.90441 0.90794 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.03 13.70 55.43 0.76 -25.27 16 2 C 0.03 0.83 5.47 -17.82 -0.10 0.74 16 3 Si 1.04 23.13 25.49 -169.99 -4.33 18.80 16 4 H -0.28 -5.83 6.95 56.52 0.39 -5.44 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -5.64 6.36 56.52 0.36 -5.28 16 7 C -0.62 -15.93 9.07 -34.44 -0.31 -16.24 16 8 H 0.06 1.68 7.97 -52.49 -0.42 1.26 16 9 C 0.21 4.54 2.28 -70.01 -0.16 4.38 16 10 H 0.06 1.30 5.98 -51.93 -0.31 0.99 16 11 N -0.85 -17.44 8.71 -6.65 -0.06 -17.49 16 12 C 0.01 0.19 5.00 -104.57 -0.52 -0.33 16 13 C -0.12 -2.28 9.24 -39.57 -0.37 -2.64 16 14 C 0.06 1.13 7.31 -39.41 -0.29 0.85 16 15 F -0.14 -2.51 17.18 2.25 0.04 -2.47 16 16 C 0.05 0.90 7.31 -39.32 -0.29 0.61 16 17 F -0.14 -2.48 17.17 2.25 0.04 -2.44 16 18 C -0.11 -1.94 6.12 -104.15 -0.64 -2.57 16 19 C -0.07 -1.34 6.00 -104.19 -0.63 -1.97 16 20 C -0.08 -1.19 6.31 -26.84 -0.17 -1.36 16 21 C -0.12 -1.44 7.08 -25.32 -0.18 -1.62 16 22 C -0.07 -0.95 6.75 -26.85 -0.18 -1.13 16 23 H 0.27 7.87 8.72 -40.82 -0.36 7.51 16 24 H 0.32 6.60 5.41 -39.29 -0.21 6.39 16 25 H 0.33 6.51 7.33 -39.30 -0.29 6.22 16 26 H 0.15 2.64 6.34 -52.49 -0.33 2.31 16 27 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.08 1.23 7.69 -51.93 -0.40 0.83 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 270.74 15.07 4.08 4.08 Total: -1.00 -27.94 270.74 -6.58 -34.51 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -3.28 Total: 11.58 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -3.83 Total: -21.29 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.70 Total: -42.77 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.08 Total: -4.92 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.33 Total: 18.80 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.94 -6.58 -34.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309550147.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.098 kcal (2) G-P(sol) polarization free energy of solvation -27.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds