Wall clock time and date at job start Mon Mar 30 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00261 * 2 1 4 4 H 1.48496 * 109.47029 * 89.99514 * 3 2 1 5 5 H 1.48500 * 109.47015 * 329.99948 * 3 2 1 6 6 H 1.48496 * 109.47122 * 210.00144 * 3 2 1 7 7 C 1.37883 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00382 * 5.43076 * 7 2 1 9 9 C 1.50705 * 119.99517 * 185.43342 * 7 2 1 10 10 H 1.08992 * 109.47248 * 305.19477 * 9 7 2 11 11 N 1.46900 * 109.47089 * 65.19763 * 9 7 2 12 12 C 1.50698 * 109.46712 * 185.19435 * 9 7 2 13 13 C 1.38150 * 119.85073 * 264.72446 * 12 9 7 14 14 C 1.38368 * 119.93640 * 179.71813 * 13 12 9 15 15 F 1.35095 * 120.07090 * 180.30815 * 14 13 12 16 16 C 1.38586 * 119.85675 * 0.59462 * 14 13 12 17 17 F 1.35098 * 119.92183 * 179.69610 * 16 14 13 18 18 C 1.38607 * 120.14810 * 359.67115 * 16 14 13 19 19 C 1.38270 * 119.85738 * 0.02562 * 18 16 14 20 20 C 1.51385 * 109.73525 * 179.97438 * 19 18 16 21 21 C 1.54349 * 105.17736 * 342.81041 * 20 19 18 22 22 C 1.51365 * 130.38131 * 180.02562 * 18 16 14 23 23 H 0.96995 * 119.99637 * 174.98241 * 1 2 3 24 24 H 1.00908 * 110.99911 * 293.20218 * 11 9 7 25 25 H 1.00893 * 111.00619 * 57.15439 * 11 9 7 26 26 H 1.07996 * 120.03147 * 0.02562 * 13 12 9 27 27 H 1.09006 * 110.29940 * 101.73181 * 20 19 18 28 28 H 1.08999 * 110.30389 * 223.88447 * 20 19 18 29 29 H 1.08996 * 110.81754 * 268.13831 * 21 20 19 30 30 H 1.08995 * 110.98755 * 144.66457 * 21 20 19 31 31 H 1.09003 * 110.29688 * 316.13834 * 22 18 16 32 32 H 1.08991 * 110.30876 * 78.28927 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 1.4000 5 1 1.4467 2.6526 -0.7001 6 1 3.5467 1.4401 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4682 -2.1273 -0.0895 9 6 3.5065 -1.1970 0.1231 10 1 3.9363 -0.5660 -0.6548 11 7 3.8903 -0.6777 1.4425 12 6 4.0204 -2.6052 -0.0314 13 6 4.2609 -3.3763 1.0894 14 6 4.7272 -4.6715 0.9494 15 9 4.9573 -5.4300 2.0434 16 6 4.9633 -5.1869 -0.3152 17 9 5.4244 -6.4492 -0.4531 18 6 4.7269 -4.4103 -1.4387 19 6 4.2550 -3.1186 -1.2958 20 6 4.0801 -2.4844 -2.6592 21 6 4.9042 -3.3644 -3.6229 22 6 4.9006 -4.7322 -2.9075 23 1 -0.4849 -0.8368 -0.0735 24 1 3.6549 0.2997 1.5289 25 1 3.4661 -1.2183 2.1813 26 1 4.0803 -2.9703 2.0737 27 1 3.0287 -2.4906 -2.9471 28 1 4.4658 -1.4650 -2.6545 29 1 5.9200 -2.9823 -3.7235 30 1 4.4204 -3.4356 -4.5970 31 1 5.8468 -5.2476 -3.0724 32 1 4.0699 -5.3423 -3.2619 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309550147.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:37 Heat of formation + Delta-G solvation = -94.680694 kcal Electronic energy + Delta-G solvation = -18698.615774 eV Core-core repulsion = 15486.423440 eV Total energy + Delta-G solvation = -3212.192334 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.50477 -49.58156 -41.17360 -37.51420 -35.88597 -33.95417 -31.55852 -29.99663 -28.25361 -27.76433 -24.69696 -22.81446 -22.40916 -20.91294 -19.90288 -18.60028 -18.47119 -17.77090 -17.44846 -16.59291 -16.33456 -15.97300 -15.73233 -15.39306 -15.12303 -15.00934 -14.49236 -14.36429 -14.01547 -13.67334 -13.43367 -13.05672 -12.75560 -12.43713 -12.32950 -12.05433 -12.02921 -11.74284 -11.61446 -11.28621 -10.79188 -9.75260 -9.65289 -9.43754 -8.67163 -6.53088 -0.06839 0.03467 1.41998 1.50992 1.65578 2.35669 2.39958 2.69847 3.00046 3.22862 3.45562 3.48672 3.81250 3.95870 4.10564 4.14670 4.22289 4.48113 4.61609 4.72182 4.81885 4.85439 4.94119 5.03717 5.08301 5.17299 5.20631 5.34811 5.55312 5.65061 5.80536 5.92060 6.33545 6.42358 6.68648 7.29794 8.56044 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.023546 B = 0.007901 C = 0.006581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.874049 B = 3543.012852 C = 4253.869111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 1.081 2.919 4 H -0.256 1.256 5 H -0.290 1.290 6 H -0.246 1.246 7 C -0.610 4.610 8 H 0.016 0.984 9 C 0.215 3.785 10 H 0.060 0.940 11 N -0.843 5.843 12 C -0.018 4.018 13 C -0.125 4.125 14 C 0.051 3.949 15 F -0.137 7.137 16 C 0.047 3.953 17 F -0.137 7.137 18 C -0.110 4.110 19 C -0.085 4.085 20 C -0.081 4.081 21 C -0.105 4.105 22 C -0.072 4.072 23 H 0.253 0.747 24 H 0.327 0.673 25 H 0.335 0.665 26 H 0.149 0.851 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.509 -5.305 -5.365 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.216 4.216 3 Si 0.902 3.098 4 H -0.181 1.181 5 H -0.217 1.217 6 H -0.170 1.170 7 C -0.649 4.649 8 H 0.034 0.966 9 C 0.105 3.895 10 H 0.078 0.922 11 N -0.374 5.374 12 C -0.019 4.019 13 C -0.144 4.144 14 C 0.031 3.969 15 F -0.116 7.116 16 C 0.027 3.973 17 F -0.116 7.116 18 C -0.111 4.111 19 C -0.086 4.086 20 C -0.118 4.118 21 C -0.142 4.142 22 C -0.109 4.109 23 H 0.062 0.938 24 H 0.141 0.859 25 H 0.147 0.853 26 H 0.166 0.834 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.099 -3.950 -5.481 13.857 hybrid contribution -1.580 -2.183 0.808 2.813 sum 10.519 -6.133 -4.672 13.042 Atomic orbital electron populations 1.70934 1.08110 1.29879 1.48085 1.27229 0.96241 1.06115 0.91984 0.83550 0.75309 0.71708 0.79254 1.18124 1.21691 1.17049 1.22670 0.92941 0.93658 1.55669 0.96606 1.18306 0.92036 0.89305 0.89902 0.92183 1.59672 1.65759 1.06897 1.05094 1.19626 0.93882 0.96954 0.91442 1.20810 1.01374 0.91089 1.01160 1.17553 1.06575 0.91065 0.81662 1.91458 1.92781 1.75362 1.51986 1.17194 1.06685 0.81093 0.92359 1.91440 1.86802 1.36797 1.96561 1.20781 1.00128 0.93901 0.96277 1.20646 0.97876 0.94527 0.95568 1.21107 1.01419 1.00097 0.89207 1.22341 1.01221 0.92367 0.98319 1.21121 1.03896 0.99521 0.86357 0.93799 0.85914 0.85283 0.83381 0.90609 0.90055 0.89267 0.87795 0.88679 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.63 13.70 21.45 0.29 -55.34 16 2 C -0.02 -0.89 5.47 84.66 0.46 -0.42 16 3 Si 1.08 45.49 25.49 68.60 1.75 47.24 16 4 H -0.26 -9.79 6.95 99.48 0.69 -9.10 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.25 -9.23 6.36 99.48 0.63 -8.59 16 7 C -0.61 -31.98 9.07 25.60 0.23 -31.74 16 8 H 0.02 0.94 7.97 -2.91 -0.02 0.91 16 9 C 0.21 9.32 2.28 43.42 0.10 9.41 16 10 H 0.06 2.59 5.98 -2.39 -0.01 2.58 16 11 N -0.84 -33.36 8.71 -174.96 -1.52 -34.89 16 12 C -0.02 -0.73 5.00 -19.83 -0.10 -0.83 16 13 C -0.13 -4.80 9.24 22.28 0.21 -4.59 16 14 C 0.05 1.89 7.31 22.38 0.16 2.06 16 15 F -0.14 -4.95 17.18 44.97 0.77 -4.17 16 16 C 0.05 1.62 7.31 22.44 0.16 1.79 16 17 F -0.14 -4.57 17.17 44.97 0.77 -3.80 16 18 C -0.11 -3.52 6.12 -19.56 -0.12 -3.64 16 19 C -0.09 -3.03 6.00 -19.59 -0.12 -3.15 16 20 C -0.08 -2.40 6.31 30.52 0.19 -2.21 16 21 C -0.11 -2.15 7.08 31.51 0.22 -1.93 16 22 C -0.07 -1.66 6.75 30.52 0.21 -1.45 16 23 H 0.25 15.46 8.72 -92.71 -0.81 14.65 16 24 H 0.33 12.62 5.41 -89.69 -0.48 12.13 16 25 H 0.33 12.95 7.33 -89.70 -0.66 12.29 16 26 H 0.15 5.40 6.34 -2.91 -0.02 5.38 16 27 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 28 H 0.08 2.35 7.69 -2.39 -0.02 2.34 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -61.15 270.74 3.58 -57.57 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -0.09 Total: 30.10 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 1.61 Total: -36.71 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -1.23 Total: -90.23 kcal Atomic # 9 Polarization: -9.52 SS G_CDS: 1.54 Total: -7.97 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.75 Total: 47.24 kcal Total: -61.15 3.58 -57.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309550147.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.115 kcal (2) G-P(sol) polarization free energy of solvation -61.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds