Wall clock time and date at job start Mon Mar 30 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99610 * 2 1 4 4 H 1.48499 * 109.47234 * 274.84225 * 3 2 1 5 5 H 1.48503 * 109.47314 * 34.84548 * 3 2 1 6 6 H 1.48501 * 109.47038 * 154.84255 * 3 2 1 7 7 C 1.38814 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99903 * 188.44072 * 7 2 1 9 9 N 1.36938 * 119.99638 * 8.44804 * 7 2 1 10 10 C 1.47423 * 125.65179 * 13.83905 * 9 7 2 11 11 C 1.54913 * 104.83140 * 155.83603 * 10 9 7 12 12 C 1.55154 * 101.57880 * 37.01234 * 11 10 9 13 13 C 1.47021 * 125.64481 * 193.80249 * 9 7 2 14 14 H 1.09006 * 109.88485 * 300.66243 * 13 9 7 15 15 C 1.50702 * 109.88469 * 61.67114 * 13 9 7 16 16 C 1.38232 * 119.98548 * 23.82859 * 15 13 9 17 17 C 1.38182 * 120.05208 * 180.27542 * 16 15 13 18 18 C 1.38496 * 120.02402 * 359.69204 * 17 16 15 19 19 F 1.35097 * 120.01902 * 180.02562 * 18 17 16 20 20 C 1.38402 * 119.97419 * 0.02829 * 18 17 16 21 21 C 1.38444 * 119.98763 * 203.54250 * 15 13 9 22 22 F 1.35096 * 120.01942 * 0.02977 * 21 15 13 23 23 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 24 24 H 1.08997 * 110.36940 * 274.67808 * 10 9 7 25 25 H 1.09001 * 110.36541 * 36.88989 * 10 9 7 26 26 H 1.08998 * 111.00171 * 155.08067 * 11 10 9 27 27 H 1.09000 * 111.00463 * 278.93653 * 11 10 9 28 28 H 1.09003 * 110.72091 * 206.13396 * 12 11 10 29 29 H 1.08998 * 110.72206 * 82.86071 * 12 11 10 30 30 H 1.08009 * 119.97532 * 359.96868 * 16 15 13 31 31 H 1.08000 * 119.99337 * 179.72019 * 17 16 15 32 32 H 1.08003 * 120.02559 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3952 2.1056 -1.3951 5 1 1.5025 2.6210 0.8000 6 1 3.5951 1.4129 0.5952 7 6 2.0103 -1.2021 0.0005 8 1 3.0816 -1.2071 0.1378 9 7 1.3368 -2.3817 -0.1732 10 6 -0.0513 -2.5162 -0.6513 11 6 -0.1269 -3.9416 -1.2533 12 6 0.7754 -4.7406 -0.2763 13 6 1.8785 -3.7238 0.0856 14 1 2.7597 -3.8935 -0.5331 15 6 2.2416 -3.8579 1.5420 16 6 1.6286 -3.0528 2.4839 17 6 1.9646 -3.1708 3.8190 18 6 2.9115 -4.1003 4.2158 19 9 3.2396 -4.2159 5.5212 20 6 3.5216 -4.9109 3.2744 21 6 3.1845 -4.7915 1.9369 22 9 3.7797 -5.5818 1.0170 23 1 -0.4850 0.8400 -0.0004 24 1 -0.7499 -2.4177 0.1795 25 1 -0.2635 -1.7682 -1.4152 26 1 -1.1495 -4.3185 -1.2375 27 1 0.2794 -3.9606 -2.2646 28 1 1.2024 -5.6128 -0.7714 29 1 0.2162 -5.0352 0.6117 30 1 0.8901 -2.3276 2.1753 31 1 1.4884 -2.5382 4.5535 32 1 4.2598 -5.6364 3.5830 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334690563.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:48 Heat of formation + Delta-G solvation = -44.007403 kcal Electronic energy + Delta-G solvation = -18830.451546 eV Core-core repulsion = 15620.456571 eV Total energy + Delta-G solvation = -3209.994975 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.69676 -48.59270 -38.91303 -36.86860 -32.67351 -30.96579 -30.29278 -29.28158 -26.75942 -24.55600 -22.74624 -22.09960 -20.26786 -19.58741 -17.83010 -17.06134 -16.63987 -15.63032 -15.46425 -15.31901 -14.95611 -14.85114 -14.19421 -13.92885 -13.78274 -13.22060 -12.60144 -12.19642 -12.08545 -11.86012 -11.46627 -11.43466 -11.08799 -10.86178 -10.85290 -10.47565 -10.13428 -9.99722 -9.88503 -9.76207 -8.72127 -8.56396 -8.10734 -6.91479 -5.85423 -3.20823 1.40144 1.49359 3.34771 3.41936 3.42710 3.85744 4.24916 4.41180 4.85023 4.97609 5.12902 5.28051 5.39359 5.44866 5.58098 5.69732 5.74885 5.86829 6.17909 6.19999 6.30652 6.36743 6.44615 6.54679 6.62042 6.69251 6.81687 7.08906 7.27495 7.41623 7.54126 7.72093 8.15649 9.10016 9.70030 10.37822 11.26837 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.018607 B = 0.008729 C = 0.006910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.418032 B = 3207.072125 C = 4051.311412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.000 4.000 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.074 0.926 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.147 4.147 12 C -0.118 4.118 13 C 0.193 3.807 14 H 0.051 0.949 15 C -0.118 4.118 16 C -0.022 4.022 17 C -0.170 4.170 18 C 0.107 3.893 19 F -0.143 7.143 20 C -0.204 4.204 21 C 0.117 3.883 22 F -0.137 7.137 23 H 0.254 0.746 24 H 0.031 0.969 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.161 0.839 31 H 0.134 0.866 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.889 -8.774 3.718 9.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.197 4.197 3 Si 0.738 3.262 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.359 4.359 8 H 0.092 0.908 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.186 4.186 12 C -0.156 4.156 13 C 0.085 3.915 14 H 0.069 0.931 15 C -0.122 4.122 16 C -0.040 4.040 17 C -0.189 4.189 18 C 0.087 3.913 19 F -0.122 7.122 20 C -0.224 4.224 21 C 0.098 3.902 22 F -0.115 7.115 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.178 0.822 31 H 0.152 0.848 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.857 -8.549 3.725 9.508 hybrid contribution 0.784 0.767 0.263 1.127 sum 2.641 -7.782 3.987 9.134 Atomic orbital electron populations 1.69948 1.04903 1.25438 1.55626 1.24839 0.95575 0.97773 1.01558 0.86172 0.78906 0.83552 0.77609 1.21536 1.21665 1.20488 1.18968 0.90854 0.82395 1.43669 0.90806 1.44600 1.11705 0.99412 1.75529 1.21417 0.85781 0.91097 0.97021 1.23004 0.98168 0.99053 0.98379 1.22525 0.96876 0.96932 0.99295 1.19947 0.95773 0.87826 0.87975 0.93150 1.21172 0.95842 0.94886 1.00296 1.21137 0.97328 0.95817 0.89696 1.21268 0.99660 0.99942 0.97984 1.17284 0.98058 0.98331 0.77593 1.91464 1.91760 1.95418 1.33543 1.20796 1.05399 1.04373 0.91795 1.17255 0.95214 0.92429 0.85350 1.91459 1.82328 1.72229 1.65526 0.93546 0.95082 0.91648 0.92092 0.92148 0.91890 0.91755 0.82176 0.84786 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.01 10.80 55.49 0.60 -24.41 16 2 C 0.00 0.00 5.40 -17.43 -0.09 -0.09 16 3 Si 0.91 21.30 29.56 -169.99 -5.03 16.28 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -5.99 8.96 -15.06 -0.13 -6.13 16 8 H 0.07 1.94 7.84 -52.49 -0.41 1.53 16 9 N -0.59 -13.85 2.17 -163.87 -0.36 -14.21 16 10 C 0.17 3.85 5.38 -2.53 -0.01 3.84 16 11 C -0.15 -2.62 7.09 -24.58 -0.17 -2.80 16 12 C -0.12 -2.03 6.47 -24.90 -0.16 -2.19 16 13 C 0.19 3.88 3.09 -68.11 -0.21 3.67 16 14 H 0.05 1.05 7.82 -51.93 -0.41 0.65 16 15 C -0.12 -2.25 4.74 -104.55 -0.50 -2.75 16 16 C -0.02 -0.41 8.83 -39.60 -0.35 -0.76 16 17 C -0.17 -2.85 10.03 -39.51 -0.40 -3.24 16 18 C 0.11 1.72 7.30 -39.43 -0.29 1.43 16 19 F -0.14 -2.22 17.27 2.25 0.04 -2.19 16 20 C -0.20 -3.21 10.01 -39.44 -0.39 -3.61 16 21 C 0.12 2.04 7.24 -39.43 -0.29 1.75 16 22 F -0.14 -2.32 16.59 2.25 0.04 -2.29 16 23 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 24 H 0.03 0.75 8.00 -51.93 -0.42 0.33 16 25 H 0.07 1.64 7.16 -51.93 -0.37 1.27 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.07 7.84 -51.93 -0.41 0.66 16 30 H 0.16 3.51 6.94 -52.48 -0.36 3.14 16 31 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 32 H 0.14 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 276.69 15.07 4.17 4.17 Total: -1.00 -26.60 276.69 -7.16 -33.76 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -3.63 Total: -0.25 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -3.00 Total: -10.87 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.24 Total: -38.62 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.08 Total: -4.47 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.60 -7.16 -33.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334690563.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.247 kcal (2) G-P(sol) polarization free energy of solvation -26.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds