Wall clock time and date at job start Mon Mar 30 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99610 * 2 1 4 4 H 1.48499 * 109.47234 * 274.84225 * 3 2 1 5 5 H 1.48503 * 109.47314 * 34.84548 * 3 2 1 6 6 H 1.48501 * 109.47038 * 154.84255 * 3 2 1 7 7 C 1.38814 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99903 * 188.44072 * 7 2 1 9 9 N 1.36938 * 119.99638 * 8.44804 * 7 2 1 10 10 C 1.47423 * 125.65179 * 13.83905 * 9 7 2 11 11 C 1.54913 * 104.83140 * 155.83603 * 10 9 7 12 12 C 1.55154 * 101.57880 * 37.01234 * 11 10 9 13 13 C 1.47021 * 125.64481 * 193.80249 * 9 7 2 14 14 H 1.09006 * 109.88485 * 300.66243 * 13 9 7 15 15 C 1.50702 * 109.88469 * 61.67114 * 13 9 7 16 16 C 1.38232 * 119.98548 * 23.82859 * 15 13 9 17 17 C 1.38182 * 120.05208 * 180.27542 * 16 15 13 18 18 C 1.38496 * 120.02402 * 359.69204 * 17 16 15 19 19 F 1.35097 * 120.01902 * 180.02562 * 18 17 16 20 20 C 1.38402 * 119.97419 * 0.02829 * 18 17 16 21 21 C 1.38444 * 119.98763 * 203.54250 * 15 13 9 22 22 F 1.35096 * 120.01942 * 0.02977 * 21 15 13 23 23 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 24 24 H 1.08997 * 110.36940 * 274.67808 * 10 9 7 25 25 H 1.09001 * 110.36541 * 36.88989 * 10 9 7 26 26 H 1.08998 * 111.00171 * 155.08067 * 11 10 9 27 27 H 1.09000 * 111.00463 * 278.93653 * 11 10 9 28 28 H 1.09003 * 110.72091 * 206.13396 * 12 11 10 29 29 H 1.08998 * 110.72206 * 82.86071 * 12 11 10 30 30 H 1.08009 * 119.97532 * 359.96868 * 16 15 13 31 31 H 1.08000 * 119.99337 * 179.72019 * 17 16 15 32 32 H 1.08003 * 120.02559 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3952 2.1056 -1.3951 5 1 1.5025 2.6210 0.8000 6 1 3.5951 1.4129 0.5952 7 6 2.0103 -1.2021 0.0005 8 1 3.0816 -1.2071 0.1378 9 7 1.3368 -2.3817 -0.1732 10 6 -0.0513 -2.5162 -0.6513 11 6 -0.1269 -3.9416 -1.2533 12 6 0.7754 -4.7406 -0.2763 13 6 1.8785 -3.7238 0.0856 14 1 2.7597 -3.8935 -0.5331 15 6 2.2416 -3.8579 1.5420 16 6 1.6286 -3.0528 2.4839 17 6 1.9646 -3.1708 3.8190 18 6 2.9115 -4.1003 4.2158 19 9 3.2396 -4.2159 5.5212 20 6 3.5216 -4.9109 3.2744 21 6 3.1845 -4.7915 1.9369 22 9 3.7797 -5.5818 1.0170 23 1 -0.4850 0.8400 -0.0004 24 1 -0.7499 -2.4177 0.1795 25 1 -0.2635 -1.7682 -1.4152 26 1 -1.1495 -4.3185 -1.2375 27 1 0.2794 -3.9606 -2.2646 28 1 1.2024 -5.6128 -0.7714 29 1 0.2162 -5.0352 0.6117 30 1 0.8901 -2.3276 2.1753 31 1 1.4884 -2.5382 4.5535 32 1 4.2598 -5.6364 3.5830 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334690563.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:48 Heat of formation + Delta-G solvation = -56.108722 kcal Electronic energy + Delta-G solvation = -18830.976299 eV Core-core repulsion = 15620.456571 eV Total energy + Delta-G solvation = -3210.519728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.97046 -49.93568 -40.40067 -38.41428 -34.56890 -32.42485 -31.68031 -31.08328 -28.29728 -26.44389 -24.15453 -23.52779 -21.90989 -21.17684 -19.18474 -18.83034 -18.09315 -17.03602 -16.92671 -16.75403 -16.53868 -16.26630 -15.80035 -15.46828 -15.29211 -14.71192 -14.09666 -13.82926 -13.73261 -13.38236 -13.10039 -12.93312 -12.80123 -12.65782 -12.36985 -11.99097 -11.91880 -11.73740 -11.56775 -11.42080 -10.66115 -9.95999 -9.51341 -8.82017 -7.86971 -5.22740 0.02660 0.13230 1.45846 1.47630 1.55292 2.45201 2.49967 2.91002 3.31466 3.47132 3.58550 3.78032 3.83866 3.98520 4.09504 4.23240 4.34769 4.35832 4.68311 4.81694 4.88821 5.00033 5.02741 5.07244 5.19298 5.24521 5.33402 5.48161 5.64455 5.66434 5.78752 5.87645 6.22753 7.10973 7.76775 8.44078 9.24098 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.018607 B = 0.008729 C = 0.006910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.418032 B = 3207.072125 C = 4051.311412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.049 4.049 3 Si 0.962 3.038 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.230 4.230 8 H 0.067 0.933 9 N -0.603 5.603 10 C 0.176 3.824 11 C -0.133 4.133 12 C -0.108 4.108 13 C 0.187 3.813 14 H 0.043 0.957 15 C -0.131 4.131 16 C -0.037 4.037 17 C -0.165 4.165 18 C 0.113 3.887 19 F -0.135 7.135 20 C -0.188 4.188 21 C 0.117 3.883 22 F -0.133 7.133 23 H 0.248 0.752 24 H 0.007 0.993 25 H 0.030 0.970 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.126 0.874 31 H 0.149 0.851 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.998 -10.471 4.444 11.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.243 4.243 3 Si 0.792 3.208 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.359 4.359 8 H 0.085 0.915 9 N -0.327 5.327 10 C 0.051 3.949 11 C -0.171 4.171 12 C -0.146 4.146 13 C 0.080 3.920 14 H 0.060 0.940 15 C -0.135 4.135 16 C -0.055 4.055 17 C -0.184 4.184 18 C 0.093 3.907 19 F -0.114 7.114 20 C -0.208 4.208 21 C 0.097 3.903 22 F -0.112 7.112 23 H 0.058 0.942 24 H 0.025 0.975 25 H 0.048 0.952 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.144 0.856 31 H 0.167 0.833 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.985 -10.277 4.455 11.592 hybrid contribution 0.482 1.235 0.087 1.329 sum 3.468 -9.042 4.542 10.696 Atomic orbital electron populations 1.70107 1.05927 1.25393 1.57138 1.25455 0.96268 1.00282 1.02312 0.85306 0.78004 0.80340 0.77183 1.21714 1.22025 1.19828 1.19087 0.90701 0.83670 1.42424 0.91511 1.44738 1.11958 1.00193 1.75811 1.21229 0.85025 0.93290 0.95340 1.22889 1.00108 0.95687 0.98456 1.22520 0.95750 0.96812 0.99532 1.20070 0.96359 0.86824 0.88778 0.93962 1.20993 0.96986 0.96030 0.99454 1.20793 0.97717 0.96036 0.90980 1.21346 0.99634 1.00168 0.97237 1.17222 0.97552 0.97897 0.77996 1.91491 1.91593 1.95308 1.32998 1.21038 1.04955 1.04033 0.90727 1.17169 0.94874 0.92192 0.86071 1.91469 1.82161 1.71991 1.65560 0.94231 0.97522 0.95151 0.89456 0.91446 0.89098 0.91088 0.85598 0.83279 0.81454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.32 10.80 21.65 0.23 -53.08 16 2 C -0.05 -2.64 5.40 84.86 0.46 -2.18 16 3 Si 0.96 44.63 29.56 68.60 2.03 46.65 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.23 -12.21 8.96 84.03 0.75 -11.46 16 8 H 0.07 3.57 7.84 -2.91 -0.02 3.55 16 9 N -0.60 -28.95 2.17 -672.38 -1.46 -30.41 16 10 C 0.18 8.12 5.38 86.86 0.47 8.58 16 11 C -0.13 -4.56 7.09 31.99 0.23 -4.33 16 12 C -0.11 -3.50 6.47 31.78 0.21 -3.30 16 13 C 0.19 7.41 3.09 44.60 0.14 7.54 16 14 H 0.04 1.74 7.82 -2.38 -0.02 1.72 16 15 C -0.13 -4.88 4.74 -19.82 -0.09 -4.97 16 16 C -0.04 -1.41 8.83 22.25 0.20 -1.21 16 17 C -0.17 -5.32 10.03 22.32 0.22 -5.09 16 18 C 0.11 3.32 7.30 22.37 0.16 3.48 16 19 F -0.14 -3.76 17.27 44.97 0.78 -2.99 16 20 C -0.19 -5.29 10.01 22.36 0.22 -5.06 16 21 C 0.12 3.78 7.24 22.37 0.16 3.94 16 22 F -0.13 -4.16 16.59 44.97 0.75 -3.42 16 23 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 24 H 0.01 0.34 8.00 -2.39 -0.02 0.32 16 25 H 0.03 1.58 7.16 -2.39 -0.02 1.56 16 26 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.07 2.21 7.84 -2.39 -0.02 2.19 16 30 H 0.13 5.75 6.94 -2.91 -0.02 5.73 16 31 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -57.86 276.69 6.57 -51.29 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.13 Total: 6.01 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 3.12 Total: -14.05 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -1.23 Total: -83.49 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 1.52 Total: -6.40 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -57.86 6.57 -51.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334690563.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.821 kcal (2) G-P(sol) polarization free energy of solvation -57.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds