Wall clock time and date at job start Mon Mar 30 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47509 * 180.02562 * 9 7 2 11 11 C 1.47163 * 111.00233 * 170.00049 * 10 9 7 12 12 C 1.52890 * 108.50662 * 52.13362 * 11 10 9 13 13 C 1.50728 * 109.96879 * 50.40084 * 12 11 10 14 14 C 1.38685 * 118.46442 * 163.13061 * 13 12 11 15 15 C 1.38027 * 120.43556 * 179.83297 * 14 13 12 16 16 C 1.38416 * 119.83217 * 359.97438 * 15 14 13 17 17 F 1.35097 * 120.10788 * 180.02562 * 16 15 14 18 18 C 1.38458 * 119.78624 * 0.06413 * 16 15 14 19 19 F 1.35099 * 119.84256 * 179.97438 * 18 16 15 20 20 C 1.37845 * 121.64067 * 343.07639 * 13 12 11 21 21 C 1.46632 * 110.99426 * 292.97037 * 10 9 7 22 22 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 24 24 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 25 25 H 1.08994 * 109.63359 * 171.84622 * 11 10 9 26 26 H 1.09002 * 109.62558 * 292.43169 * 11 10 9 27 27 H 1.09002 * 109.39023 * 170.54836 * 12 11 10 28 28 H 1.08995 * 109.39134 * 290.34244 * 12 11 10 29 29 H 1.08001 * 119.78508 * 359.85393 * 14 13 12 30 30 H 1.08002 * 120.08851 * 179.97438 * 15 14 13 31 31 H 1.08999 * 109.30579 * 49.46645 * 21 10 9 32 32 H 1.09007 * 109.29917 * 168.84042 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 7 2.2058 -3.6156 0.0180 11 6 1.5202 -4.8945 0.2632 12 6 0.3644 -5.0236 -0.7293 13 6 0.8560 -4.7581 -2.1292 14 6 0.0674 -5.1651 -3.1950 15 6 0.4766 -4.9394 -4.4937 16 6 1.6814 -4.3023 -4.7353 17 9 2.0870 -4.0781 -6.0042 18 6 2.4699 -3.8962 -3.6721 19 9 3.6464 -3.2747 -3.9065 20 6 2.0578 -4.1258 -2.3659 21 6 2.9533 -3.6742 -1.2421 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6248 -2.5524 0.9029 24 1 0.6241 -2.5613 -0.8770 25 1 2.2195 -5.7182 0.1201 26 1 1.1322 -4.9125 1.2816 27 1 -0.0478 -6.0312 -0.6757 28 1 -0.4117 -4.3012 -0.4768 29 1 -0.8732 -5.6616 -3.0075 30 1 -0.1418 -5.2591 -5.3195 31 1 3.3496 -2.6852 -1.4724 32 1 3.7814 -4.3753 -1.1375 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335898331.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:32 Heat of formation + Delta-G solvation = -67.268884 kcal Electronic energy + Delta-G solvation = -18894.007461 eV Core-core repulsion = 15683.003792 eV Total energy + Delta-G solvation = -3211.003668 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.25492 -48.31882 -40.02207 -36.79098 -33.12323 -32.07541 -30.77727 -28.77704 -26.97563 -24.35230 -23.22601 -22.48704 -22.04358 -19.31357 -17.55504 -17.17157 -16.95996 -16.20576 -16.13998 -15.02647 -14.75377 -14.55117 -14.33121 -14.17584 -13.86868 -13.65589 -13.53023 -12.88245 -12.37843 -12.24490 -11.90402 -11.50051 -11.25968 -11.16114 -10.99834 -10.83912 -10.56734 -10.31159 -10.06906 -8.72291 -8.60346 -8.43175 -8.36867 -7.54488 -6.39295 -4.08265 1.06177 1.14912 3.44980 3.45716 3.46669 3.64899 3.95158 4.49035 4.50737 4.61022 4.72474 4.79589 5.07415 5.15916 5.37177 5.41961 5.46744 5.58826 5.82814 5.92023 5.93429 6.02676 6.04645 6.14893 6.29544 6.35816 6.62076 6.87539 6.94029 7.01707 7.65758 7.82710 8.24180 8.52909 8.83670 9.61765 10.99930 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.020161 B = 0.008096 C = 0.006874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.476571 B = 3457.486268 C = 4072.155701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.286 1.286 6 H -0.288 1.288 7 C -0.591 4.591 8 H 0.057 0.943 9 C 0.177 3.823 10 N -0.516 5.516 11 C 0.048 3.952 12 C -0.117 4.117 13 C -0.055 4.055 14 C -0.103 4.103 15 C -0.134 4.134 16 C 0.057 3.943 17 F -0.134 7.134 18 C 0.072 3.928 19 F -0.126 7.126 20 C -0.097 4.097 21 C 0.096 3.904 22 H 0.266 0.734 23 H 0.021 0.979 24 H -0.008 1.008 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.105 0.895 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.795 -12.095 -5.707 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.187 4.187 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.630 4.630 8 H 0.075 0.925 9 C 0.052 3.948 10 N -0.237 5.237 11 C -0.081 4.081 12 C -0.156 4.156 13 C -0.056 4.056 14 C -0.121 4.121 15 C -0.153 4.153 16 C 0.037 3.963 17 F -0.113 7.113 18 C 0.052 3.948 19 F -0.105 7.105 20 C -0.100 4.100 21 C -0.033 4.033 22 H 0.076 0.924 23 H 0.039 0.961 24 H 0.009 0.991 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.153 0.847 30 H 0.159 0.841 31 H 0.123 0.877 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.013 -10.307 -5.333 11.649 hybrid contribution -0.239 -1.629 -1.141 2.003 sum 0.774 -11.936 -6.474 13.601 Atomic orbital electron populations 1.70813 1.06866 1.30284 1.46878 1.25813 0.96465 1.02663 0.93804 0.83537 0.74904 0.75208 0.76657 1.20798 1.21270 1.21404 1.21962 0.94816 0.91016 1.55189 0.92485 1.19931 0.90954 0.88721 0.95233 1.62689 1.28285 1.02901 1.29786 1.22266 0.94091 0.93399 0.98333 1.21173 1.00687 1.02295 0.91396 1.19538 0.93023 0.96646 0.96375 1.20974 0.99848 1.00302 0.90970 1.20884 0.94868 1.01063 0.98514 1.17589 0.95941 1.04519 0.78283 1.91490 1.90549 1.93088 1.36168 1.17600 0.84187 1.00232 0.92824 1.91501 1.43868 1.80023 1.95092 1.20625 0.97378 0.98042 0.93983 1.21119 0.94379 1.02717 0.85080 0.92418 0.96071 0.99066 0.91364 0.90296 0.90358 0.89460 0.84674 0.84099 0.87688 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.55 13.65 55.43 0.76 -26.80 16 2 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 3 Si 1.07 25.49 29.90 -169.99 -5.08 20.41 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.59 -16.59 8.37 -34.44 -0.29 -16.88 16 8 H 0.06 1.61 7.25 -52.49 -0.38 1.23 16 9 C 0.18 4.40 3.00 -4.98 -0.01 4.38 16 10 N -0.52 -10.71 5.01 -237.63 -1.19 -11.90 16 11 C 0.05 0.78 6.02 -3.74 -0.02 0.75 16 12 C -0.12 -1.75 5.17 -27.93 -0.14 -1.89 16 13 C -0.06 -0.90 5.06 -104.59 -0.53 -1.42 16 14 C -0.10 -1.40 9.65 -39.49 -0.38 -1.78 16 15 C -0.13 -1.84 10.03 -39.59 -0.40 -2.24 16 16 C 0.06 0.93 7.31 -39.43 -0.29 0.64 16 17 F -0.13 -2.20 17.18 2.25 0.04 -2.16 16 18 C 0.07 1.31 7.23 -39.26 -0.28 1.03 16 19 F -0.13 -2.39 16.45 2.25 0.04 -2.35 16 20 C -0.10 -1.78 5.20 -104.56 -0.54 -2.32 16 21 C 0.10 1.87 5.08 -5.16 -0.03 1.84 16 22 H 0.27 7.95 7.22 -40.82 -0.29 7.65 16 23 H 0.02 0.56 7.95 -51.92 -0.41 0.14 16 24 H -0.01 -0.22 5.77 -51.93 -0.30 -0.52 16 25 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.09 1.44 7.06 -51.93 -0.37 1.08 16 29 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.11 2.32 6.45 -51.93 -0.33 1.99 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 271.35 15.07 4.09 4.09 Total: -1.00 -30.72 271.35 -7.78 -38.51 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -3.42 Total: -2.28 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -3.02 Total: -17.51 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: -0.43 Total: -38.70 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 0.08 Total: -4.51 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.41 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.72 -7.78 -38.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335898331.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.764 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds