Wall clock time and date at job start Mon Mar 30 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47509 * 180.02562 * 9 7 2 11 11 C 1.47163 * 111.00233 * 170.00049 * 10 9 7 12 12 C 1.52890 * 108.50662 * 52.13362 * 11 10 9 13 13 C 1.50728 * 109.96879 * 50.40084 * 12 11 10 14 14 C 1.38685 * 118.46442 * 163.13061 * 13 12 11 15 15 C 1.38027 * 120.43556 * 179.83297 * 14 13 12 16 16 C 1.38416 * 119.83217 * 359.97438 * 15 14 13 17 17 F 1.35097 * 120.10788 * 180.02562 * 16 15 14 18 18 C 1.38458 * 119.78624 * 0.06413 * 16 15 14 19 19 F 1.35099 * 119.84256 * 179.97438 * 18 16 15 20 20 C 1.37845 * 121.64067 * 343.07639 * 13 12 11 21 21 C 1.46632 * 110.99426 * 292.97037 * 10 9 7 22 22 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 24 24 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 25 25 H 1.08994 * 109.63359 * 171.84622 * 11 10 9 26 26 H 1.09002 * 109.62558 * 292.43169 * 11 10 9 27 27 H 1.09002 * 109.39023 * 170.54836 * 12 11 10 28 28 H 1.08995 * 109.39134 * 290.34244 * 12 11 10 29 29 H 1.08001 * 119.78508 * 359.85393 * 14 13 12 30 30 H 1.08002 * 120.08851 * 179.97438 * 15 14 13 31 31 H 1.08999 * 109.30579 * 49.46645 * 21 10 9 32 32 H 1.09007 * 109.29917 * 168.84042 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 7 2.2058 -3.6156 0.0180 11 6 1.5202 -4.8945 0.2632 12 6 0.3644 -5.0236 -0.7293 13 6 0.8560 -4.7581 -2.1292 14 6 0.0674 -5.1651 -3.1950 15 6 0.4766 -4.9394 -4.4937 16 6 1.6814 -4.3023 -4.7353 17 9 2.0870 -4.0781 -6.0042 18 6 2.4699 -3.8962 -3.6721 19 9 3.6464 -3.2747 -3.9065 20 6 2.0578 -4.1258 -2.3659 21 6 2.9533 -3.6742 -1.2421 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6248 -2.5524 0.9029 24 1 0.6241 -2.5613 -0.8770 25 1 2.2195 -5.7182 0.1201 26 1 1.1322 -4.9125 1.2816 27 1 -0.0478 -6.0312 -0.6757 28 1 -0.4117 -4.3012 -0.4768 29 1 -0.8732 -5.6616 -3.0075 30 1 -0.1418 -5.2591 -5.3195 31 1 3.3496 -2.6852 -1.4724 32 1 3.7814 -4.3753 -1.1375 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335898331.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:31 Heat of formation + Delta-G solvation = -86.579536 kcal Electronic energy + Delta-G solvation = -18894.844834 eV Core-core repulsion = 15683.003792 eV Total energy + Delta-G solvation = -3211.841041 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.58031 -49.65891 -41.35951 -38.21418 -35.17274 -33.41604 -32.18283 -30.09303 -28.81763 -26.01727 -24.75289 -23.98759 -23.40948 -20.80323 -19.04272 -18.66217 -18.48433 -17.67520 -17.47624 -16.62976 -16.12427 -15.99077 -15.70803 -15.60585 -15.52016 -15.21050 -14.88811 -14.24531 -14.01043 -13.65043 -13.40572 -13.13711 -13.02729 -12.60008 -12.41356 -12.38500 -12.26429 -11.97084 -11.73301 -10.79325 -10.58090 -9.87983 -9.64236 -9.19920 -8.67395 -6.36987 -0.18169 -0.07317 1.50347 1.57935 1.77235 2.24528 2.53164 2.71058 3.12051 3.17301 3.24445 3.48086 3.55518 3.82870 3.99491 4.16594 4.22451 4.29952 4.50365 4.66368 4.73972 4.80180 4.81322 4.84761 4.89745 5.00936 5.03801 5.14574 5.34757 5.70541 5.76266 5.97618 6.30557 6.40866 6.64693 7.40694 8.72063 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.020161 B = 0.008096 C = 0.006874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.476571 B = 3457.486268 C = 4072.155701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.033 4.033 3 Si 1.111 2.889 4 H -0.281 1.281 5 H -0.268 1.268 6 H -0.277 1.277 7 C -0.604 4.604 8 H 0.048 0.952 9 C 0.196 3.804 10 N -0.531 5.531 11 C 0.043 3.957 12 C -0.111 4.111 13 C -0.067 4.067 14 C -0.089 4.089 15 C -0.119 4.119 16 C 0.045 3.955 17 F -0.138 7.138 18 C 0.043 3.957 19 F -0.142 7.142 20 C -0.122 4.122 21 C 0.101 3.899 22 H 0.255 0.745 23 H 0.003 0.997 24 H -0.024 1.024 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.124 0.876 28 H 0.068 0.932 29 H 0.178 0.822 30 H 0.181 0.819 31 H 0.067 0.933 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.072 -13.717 -6.231 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.231 4.231 3 Si 0.933 3.067 4 H -0.206 1.206 5 H -0.193 1.193 6 H -0.202 1.202 7 C -0.642 4.642 8 H 0.066 0.934 9 C 0.069 3.931 10 N -0.252 5.252 11 C -0.084 4.084 12 C -0.149 4.149 13 C -0.068 4.068 14 C -0.107 4.107 15 C -0.137 4.137 16 C 0.025 3.975 17 F -0.116 7.116 18 C 0.023 3.977 19 F -0.120 7.120 20 C -0.125 4.125 21 C -0.028 4.028 22 H 0.065 0.935 23 H 0.021 0.979 24 H -0.006 1.006 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.142 0.858 28 H 0.086 0.914 29 H 0.196 0.804 30 H 0.198 0.802 31 H 0.085 0.915 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.157 -11.963 -5.855 13.320 hybrid contribution 0.023 -1.227 -0.998 1.582 sum 0.180 -13.191 -6.853 14.866 Atomic orbital electron populations 1.70928 1.07677 1.29712 1.48982 1.27193 0.96609 1.06266 0.93054 0.82996 0.74233 0.71628 0.77812 1.20639 1.19315 1.20223 1.22341 0.94699 0.92838 1.54315 0.93389 1.19519 0.90800 0.89326 0.93419 1.62559 1.27978 1.03934 1.30710 1.22428 0.95133 0.91627 0.99242 1.21155 0.99376 1.04278 0.90098 1.19857 0.92517 0.96476 0.97948 1.21438 1.00536 0.98765 0.89958 1.21366 0.93593 0.98828 0.99923 1.17863 0.96796 1.05127 0.77703 1.91478 1.90758 1.93212 1.36188 1.17913 0.84482 1.01604 0.93730 1.91449 1.44807 1.80562 1.95204 1.20563 0.98600 0.99919 0.93394 1.20920 0.95165 1.01274 0.85416 0.93522 0.97866 1.00618 0.88837 0.89677 0.85838 0.91401 0.80438 0.80191 0.91514 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.56 13.65 21.45 0.29 -57.26 16 2 C -0.03 -1.94 5.46 84.65 0.46 -1.48 16 3 Si 1.11 51.68 29.90 68.60 2.05 53.74 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.60 -34.78 8.37 25.60 0.21 -34.57 16 8 H 0.05 2.79 7.25 -2.91 -0.02 2.77 16 9 C 0.20 9.98 3.00 85.56 0.26 10.24 16 10 N -0.53 -22.18 5.01 -905.74 -4.54 -26.72 16 11 C 0.04 1.34 6.02 86.22 0.52 1.86 16 12 C -0.11 -3.03 5.17 29.82 0.15 -2.88 16 13 C -0.07 -2.04 5.06 -19.84 -0.10 -2.14 16 14 C -0.09 -2.08 9.65 22.33 0.22 -1.86 16 15 C -0.12 -2.82 10.03 22.26 0.22 -2.60 16 16 C 0.05 1.42 7.31 22.36 0.16 1.58 16 17 F -0.14 -4.37 17.18 44.97 0.77 -3.60 16 18 C 0.04 1.58 7.23 22.48 0.16 1.75 16 19 F -0.14 -5.57 16.45 44.97 0.74 -4.83 16 20 C -0.12 -4.44 5.20 -19.83 -0.10 -4.54 16 21 C 0.10 4.02 5.08 85.58 0.44 4.45 16 22 H 0.26 15.73 7.22 -92.70 -0.67 15.06 16 23 H 0.00 0.18 7.95 -2.38 -0.02 0.16 16 24 H -0.02 -1.27 5.77 -2.39 -0.01 -1.29 16 25 H 0.09 2.42 8.05 -2.39 -0.02 2.40 16 26 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.07 2.15 7.06 -2.39 -0.02 2.14 16 29 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 30 H 0.18 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.07 3.12 6.45 -2.39 -0.02 3.10 16 32 H 0.10 3.40 8.14 -2.38 -0.02 3.38 16 Total: -1.00 -68.82 271.35 3.16 -65.65 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 1.24 Total: 3.21 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 2.60 Total: -30.19 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -4.24 Total: -83.98 kcal Atomic # 9 Polarization: -9.95 SS G_CDS: 1.51 Total: -8.43 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.05 Total: 53.74 kcal Total: -68.82 3.16 -65.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335898331.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.926 kcal (2) G-P(sol) polarization free energy of solvation -68.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds