Wall clock time and date at job start Mon Mar 30 2020 06:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99904 * 2 1 4 4 H 1.48495 * 109.47257 * 240.00420 * 3 2 1 5 5 H 1.48503 * 109.47248 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47142 * 119.99871 * 3 2 1 7 7 C 1.37868 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00179 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47228 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46774 * 180.02562 * 10 9 7 12 12 C 1.47917 * 110.99615 * 170.19883 * 11 10 9 13 13 C 1.54587 * 102.62477 * 94.45645 * 12 11 10 14 14 C 1.51587 * 102.92080 * 25.33558 * 13 12 11 15 15 C 1.37991 * 131.48733 * 163.30843 * 14 13 12 16 16 C 1.38409 * 120.09208 * 181.00220 * 15 14 13 17 17 F 1.35095 * 120.09510 * 180.28898 * 16 15 14 18 18 C 1.38700 * 119.81230 * 0.26861 * 16 15 14 19 19 F 1.35097 * 119.90814 * 179.84846 * 18 16 15 20 20 C 1.38115 * 120.18582 * 359.86513 * 18 16 15 21 21 C 1.38931 * 107.96403 * 344.46134 * 14 13 12 22 22 H 0.97001 * 120.00164 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46534 * 60.00233 * 9 7 2 24 24 H 1.08993 * 109.47261 * 300.00127 * 9 7 2 25 25 H 1.09005 * 109.46688 * 60.00457 * 10 9 7 26 26 H 1.08993 * 109.47344 * 300.00370 * 10 9 7 27 27 H 1.08998 * 110.77463 * 212.73927 * 12 11 10 28 28 H 1.09004 * 110.77446 * 336.17011 * 12 11 10 29 29 H 1.09006 * 110.73204 * 143.87676 * 13 12 11 30 30 H 1.08996 * 110.73331 * 267.00676 * 13 12 11 31 31 H 1.08002 * 119.95790 * 1.28688 * 15 14 13 32 32 H 1.08008 * 119.88926 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5109 -4.9342 -0.0024 12 6 2.4243 -6.0734 -0.2388 13 6 2.7647 -6.5368 1.1962 14 6 1.5660 -6.0683 1.9970 15 6 1.1108 -6.4195 3.2515 16 6 -0.0444 -5.8479 3.7557 17 9 -0.4869 -6.1873 4.9862 18 6 -0.7463 -4.9251 2.9944 19 9 -1.8758 -4.3682 3.4834 20 6 -0.2939 -4.5743 1.7374 21 6 0.8702 -5.1451 1.2265 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5566 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 2.8727 -3.6046 0.8878 26 1 2.8714 -3.6039 -0.8922 27 1 1.9193 -6.8657 -0.7914 28 1 3.3224 -5.7466 -0.7630 29 1 2.8604 -7.6219 1.2388 30 1 3.6765 -6.0563 1.5507 31 1 1.6592 -7.1381 3.8425 32 1 -0.8440 -3.8549 1.1488 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335928798.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:13 Heat of formation + Delta-G solvation = -55.842704 kcal Electronic energy + Delta-G solvation = -18357.828576 eV Core-core repulsion = 15147.320384 eV Total energy + Delta-G solvation = -3210.508192 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.21190 -48.28603 -40.61589 -36.29717 -33.66382 -32.12955 -30.17397 -28.65335 -28.07497 -24.62653 -23.38347 -21.85763 -21.22542 -20.37976 -17.47209 -17.05328 -16.80287 -16.31002 -16.08341 -15.28087 -14.81193 -14.71425 -14.48716 -14.40188 -13.98580 -13.59521 -13.08143 -12.86839 -12.37994 -12.22674 -12.07649 -11.75934 -11.43227 -11.15849 -10.99212 -10.82293 -10.60277 -10.15479 -9.56670 -9.23091 -9.01890 -8.67310 -8.37600 -7.64083 -6.05016 -4.08257 1.07694 1.21141 3.30453 3.35470 3.36715 3.44709 3.72007 4.14409 4.34995 4.42658 4.65304 4.90582 5.01052 5.14744 5.23469 5.31408 5.45366 5.66482 5.71049 5.88378 5.94728 5.99251 6.07047 6.17927 6.22396 6.47135 6.70756 6.85058 7.17828 7.38629 7.63265 7.75412 7.96176 8.32962 8.97268 9.55755 11.06246 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.020755 B = 0.006667 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.736021 B = 4198.512319 C = 5106.777216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.021 3.979 10 C 0.063 3.937 11 N -0.494 5.494 12 C 0.048 3.952 13 C -0.105 4.105 14 C -0.133 4.133 15 C -0.099 4.099 16 C 0.041 3.959 17 F -0.134 7.134 18 C 0.087 3.913 19 F -0.127 7.127 20 C -0.111 4.111 21 C 0.136 3.864 22 H 0.262 0.738 23 H 0.026 0.974 24 H 0.024 0.976 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.385 -13.972 3.565 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.564 4.564 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.060 4.060 11 N -0.211 5.211 12 C -0.079 4.079 13 C -0.143 4.143 14 C -0.137 4.137 15 C -0.119 4.119 16 C 0.020 3.980 17 F -0.113 7.113 18 C 0.066 3.934 19 F -0.106 7.106 20 C -0.132 4.132 21 C 0.039 3.961 22 H 0.072 0.928 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.157 0.843 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.839 -13.763 3.142 14.400 hybrid contribution 0.656 1.017 0.948 1.537 sum 3.495 -12.746 4.090 13.835 Atomic orbital electron populations 1.69944 1.06008 1.26887 1.50077 1.24973 0.94849 0.99196 0.95108 0.86646 0.79595 0.83095 0.78600 1.20181 1.21195 1.20276 1.21065 0.92913 0.90832 1.51634 0.92772 1.19238 0.94095 0.90071 0.98248 1.22575 0.96689 0.86799 0.99974 1.60304 1.28465 1.04592 1.27728 1.23212 0.96083 0.93187 0.95451 1.21673 0.95687 1.01917 0.94998 1.20879 0.97621 1.01234 0.93924 1.20036 0.94952 1.01233 0.95659 1.17318 0.97212 1.01104 0.82354 1.91482 1.89106 1.91327 1.39392 1.17259 0.85787 0.96689 0.93642 1.91525 1.47763 1.83737 1.87557 1.20567 0.96673 1.01844 0.94078 1.19279 0.93063 0.94329 0.89460 0.92796 0.95528 0.95820 0.95038 0.90878 0.89518 0.89445 0.89548 0.89725 0.84292 0.82496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.02 0.52 4.83 -27.88 -0.13 0.39 16 10 C 0.06 1.25 4.69 -3.82 -0.02 1.23 16 11 N -0.49 -8.52 5.06 -168.99 -0.86 -9.37 16 12 C 0.05 0.60 7.00 -2.43 -0.02 0.58 16 13 C -0.10 -1.19 6.97 -26.61 -0.19 -1.37 16 14 C -0.13 -1.92 6.23 -104.02 -0.65 -2.57 16 15 C -0.10 -1.35 10.01 -39.61 -0.40 -1.75 16 16 C 0.04 0.64 7.31 -39.35 -0.29 0.35 16 17 F -0.13 -2.10 17.18 2.25 0.04 -2.06 16 18 C 0.09 1.51 7.29 -39.46 -0.29 1.22 16 19 F -0.13 -2.31 17.18 2.25 0.04 -2.27 16 20 C -0.11 -2.03 8.51 -39.21 -0.33 -2.36 16 21 C 0.14 2.35 5.28 -83.36 -0.44 1.91 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.02 0.62 5.58 -51.93 -0.29 0.33 16 25 H 0.03 0.62 8.06 -51.93 -0.42 0.21 16 26 H 0.07 1.37 7.85 -51.93 -0.41 0.97 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.09 0.98 7.60 -51.93 -0.39 0.58 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.16 3.09 7.18 -52.48 -0.38 2.72 16 LS Contribution 279.21 15.07 4.21 4.21 Total: -1.00 -29.78 279.21 -7.56 -37.34 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -3.54 Total: -3.03 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -3.16 Total: -15.56 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.12 Total: -34.99 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.08 Total: -4.33 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.78 -7.56 -37.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335928798.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.505 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds