Wall clock time and date at job start Mon Mar 30 2020 07:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47344 * 2 1 4 4 C 1.53003 * 109.47068 * 239.99740 * 2 1 3 5 5 C 1.50701 * 109.46701 * 59.56789 * 4 2 1 6 6 N 1.28794 * 124.99069 * 109.28735 * 5 4 2 7 7 C 1.33648 * 116.05824 * 179.97438 * 6 5 4 8 8 C 1.41161 * 122.85953 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99440 * 185.97983 * 8 7 6 10 10 C 1.39715 * 120.00201 * 5.98525 * 8 7 6 11 11 N 1.31023 * 120.00078 * 6.05777 * 10 8 7 12 12 Si 1.86806 * 120.00042 * 186.05518 * 10 8 7 13 13 H 1.48500 * 109.47138 * 59.99968 * 12 10 8 14 14 H 1.48502 * 109.46803 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46910 * 299.99876 * 12 10 8 16 16 C 1.37701 * 114.27838 * 359.97438 * 7 6 5 17 17 S 1.70991 * 108.83644 * 359.73347 * 16 7 6 18 18 C 1.52994 * 109.47206 * 299.57114 * 4 2 1 19 19 C 1.53003 * 109.47018 * 183.98338 * 18 4 2 20 20 C 1.53004 * 109.46919 * 303.98245 * 18 4 2 21 21 H 1.09001 * 109.47150 * 53.25748 * 1 2 3 22 22 H 1.09004 * 109.47544 * 293.26103 * 1 2 3 23 23 H 1.09005 * 109.47662 * 173.26104 * 1 2 3 24 24 H 1.09008 * 109.46983 * 120.00024 * 2 1 3 25 25 H 1.09000 * 109.47176 * 65.42507 * 3 2 1 26 26 H 1.08991 * 109.47353 * 185.42217 * 3 2 1 27 27 H 1.09004 * 109.47085 * 305.42768 * 3 2 1 28 28 H 1.08997 * 109.46940 * 179.56736 * 4 2 1 29 29 H 0.97001 * 120.00024 * 180.02562 * 11 10 8 30 30 H 1.08002 * 125.58082 * 179.97438 * 16 7 6 31 31 H 1.08999 * 109.47340 * 63.98096 * 18 4 2 32 32 H 1.09002 * 109.46951 * 179.97438 * 19 18 4 33 33 H 1.08998 * 109.47005 * 299.99882 * 19 18 4 34 34 H 1.08999 * 109.46745 * 59.99801 * 19 18 4 35 35 H 1.08994 * 109.47217 * 66.19325 * 20 18 4 36 36 H 1.09004 * 109.47255 * 186.19437 * 20 18 4 37 37 H 1.08997 * 109.47339 * 306.19202 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5288 -0.0171 -2.4796 6 7 2.2530 0.6762 -3.2882 7 6 1.6136 1.2242 -4.3260 8 6 2.2666 2.0114 -5.2989 9 1 1.6911 2.5115 -6.0639 10 6 3.6572 2.1436 -5.2723 11 7 4.3655 1.4445 -4.4201 12 14 4.5067 3.3170 -6.4518 13 1 4.0106 4.6974 -6.2198 14 1 5.9733 3.2735 -6.2226 15 1 4.2114 2.9133 -7.8500 16 6 0.2636 0.9555 -4.3654 17 16 -0.1426 -0.0288 -3.0275 18 6 1.5388 -2.1668 -1.2438 19 6 2.1294 -2.9158 -2.4401 20 6 1.9742 -2.8527 0.0528 21 1 -0.3633 0.6148 -0.8235 22 1 -0.3634 0.4058 0.9441 23 1 -0.3634 -1.0206 -0.1206 24 1 1.8933 -0.5139 0.8901 25 1 1.7582 1.9275 0.9346 26 1 3.1256 1.4440 -0.0971 27 1 1.5995 1.9836 -0.8374 28 1 3.1299 -0.7146 -1.2531 29 1 5.3310 1.5366 -4.4014 30 1 -0.4251 1.3057 -5.1201 31 1 0.4510 -2.1745 -1.3113 32 1 1.7727 -3.9459 -2.4360 33 1 1.8192 -2.4272 -3.3638 34 1 3.2173 -2.9081 -2.3726 35 1 1.4666 -2.3878 0.8979 36 1 1.7139 -3.9103 0.0096 37 1 3.0524 -2.7486 0.1746 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379954825.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:08 Heat of formation + Delta-G solvation = -9.649654 kcal Electronic energy + Delta-G solvation = -17405.126739 eV Core-core repulsion = 14886.295109 eV Total energy + Delta-G solvation = -2518.831630 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27650 -38.58610 -35.06509 -34.47518 -31.33591 -28.25777 -28.10456 -27.73649 -27.42466 -23.79230 -22.06117 -20.99164 -19.87196 -19.07622 -17.10047 -16.95648 -16.53597 -15.77825 -15.49874 -14.99611 -14.78003 -14.09851 -13.92598 -13.81398 -13.45875 -13.33708 -13.07823 -12.99180 -12.89019 -12.72452 -12.64201 -12.38679 -12.14546 -12.09093 -11.81800 -11.52616 -11.49188 -11.25807 -11.12582 -11.04036 -9.81389 -9.68468 -9.11161 -8.47586 -6.36363 0.51783 1.22355 1.34073 1.40065 1.46785 1.83647 2.21808 2.40421 3.47889 3.53258 3.77136 4.00941 4.17573 4.24577 4.46507 4.47050 4.72057 4.80928 4.83795 4.88000 4.91262 4.99555 5.06268 5.10037 5.12059 5.15396 5.18391 5.25420 5.30714 5.39696 5.44785 5.50927 5.53179 5.60194 5.70063 6.16969 6.57437 6.89694 7.77003 8.42411 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.007336 C = 0.007114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.933494 B = 3815.937933 C = 3934.796802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.079 4.079 3 C -0.139 4.139 4 C 0.000 4.000 5 C 0.095 3.905 6 N -0.446 5.446 7 C 0.201 3.799 8 C -0.478 4.478 9 H 0.076 0.924 10 C 0.031 3.969 11 N -0.782 5.782 12 Si 0.986 3.014 13 H -0.262 1.262 14 H -0.264 1.264 15 H -0.260 1.260 16 C -0.508 4.508 17 S 0.021 5.979 18 C -0.085 4.085 19 C -0.143 4.143 20 C -0.139 4.139 21 H 0.046 0.954 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.111 0.889 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.017 0.983 28 H 0.075 0.925 29 H 0.280 0.720 30 H 0.126 0.874 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.019 0.981 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 -6.132 10.265 12.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.098 4.098 3 C -0.197 4.197 4 C -0.023 4.023 5 C -0.189 4.189 6 N -0.160 5.160 7 C 0.079 3.921 8 C -0.512 4.512 9 H 0.094 0.906 10 C -0.188 4.188 11 N -0.405 5.405 12 Si 0.806 3.194 13 H -0.187 1.187 14 H -0.188 1.188 15 H -0.184 1.184 16 C -0.646 4.646 17 S 0.270 5.730 18 C -0.104 4.104 19 C -0.201 4.201 20 C -0.196 4.196 21 H 0.064 0.936 22 H 0.094 0.906 23 H 0.089 0.911 24 H 0.129 0.871 25 H 0.094 0.906 26 H 0.062 0.938 27 H 0.036 0.964 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.038 0.962 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.299 -6.529 10.702 12.745 hybrid contribution 0.699 1.455 -2.034 2.597 sum -1.600 -5.073 8.668 10.170 Atomic orbital electron populations 1.22188 0.94546 1.02897 1.02384 1.21174 0.96704 0.95265 0.96660 1.21759 1.00273 0.96894 1.00749 1.20122 0.99784 0.94012 0.88375 1.28467 0.90777 0.99743 0.99896 1.67354 1.34830 1.10090 1.03677 1.18385 0.88424 0.93504 0.91807 1.19239 0.92812 1.27741 1.11455 0.90574 1.26836 0.97838 0.96844 0.97321 1.70163 1.07468 1.32605 1.30301 0.85213 0.77299 0.78432 0.78420 1.18668 1.18797 1.18449 1.25411 1.00076 1.26747 1.12339 1.82123 1.15700 1.53495 1.21688 1.21220 1.00539 0.91855 0.96821 1.21811 1.00662 1.00428 0.97159 1.21843 1.01748 1.00665 0.95334 0.93568 0.90629 0.91101 0.87060 0.90646 0.93826 0.96420 0.90713 0.90971 0.85567 0.90502 0.90543 0.96177 0.93258 0.90630 0.91077 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.35 8.03 71.98 0.58 -3.77 16 2 C -0.08 -2.24 2.31 -10.79 -0.02 -2.27 16 3 C -0.14 -4.59 8.84 71.98 0.64 -3.95 16 4 C 0.00 0.00 1.75 -11.54 -0.02 -0.02 16 5 C 0.10 4.33 3.77 88.55 0.33 4.66 16 6 N -0.45 -24.79 8.54 -180.34 -1.54 -26.33 16 7 C 0.20 11.92 6.44 39.46 0.25 12.17 16 8 C -0.48 -28.28 9.23 23.34 0.22 -28.06 16 9 H 0.08 4.35 7.85 -2.91 -0.02 4.32 16 10 C 0.03 1.68 5.48 85.17 0.47 2.15 16 11 N -0.78 -43.82 11.75 21.79 0.26 -43.56 16 12 Si 0.99 40.80 29.56 68.60 2.03 42.83 16 13 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 14 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 15 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 16 C -0.51 -27.76 10.98 67.69 0.74 -27.02 16 17 S 0.02 0.91 19.26 -56.49 -1.09 -0.18 16 18 C -0.09 -2.39 1.92 -10.79 -0.02 -2.41 16 19 C -0.14 -4.49 9.00 71.98 0.65 -3.84 16 20 C -0.14 -2.76 8.52 71.98 0.61 -2.14 16 21 H 0.05 1.53 5.41 -6.01 -0.03 1.50 16 22 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 23 H 0.07 1.69 6.19 -2.38 -0.01 1.68 16 24 H 0.11 2.42 6.48 -2.38 -0.02 2.40 16 25 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.02 0.70 7.43 -2.38 -0.02 0.68 16 28 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.28 14.23 8.30 -92.71 -0.77 13.46 16 30 H 0.13 6.79 8.06 -2.91 -0.02 6.77 16 31 H 0.08 2.15 5.90 -2.39 -0.01 2.14 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.02 0.76 7.34 -2.39 -0.02 0.74 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.25 6.72 -2.39 -0.02 1.24 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -67.34 301.53 5.10 -62.24 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 1.02 Total: 19.51 kcal Atomic # 6 Polarization: -58.93 SS G_CDS: 4.42 Total: -54.51 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -1.28 Total: -69.90 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -1.09 Total: -0.18 kcal Total: -67.34 5.10 -62.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379954825.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.590 kcal (2) G-P(sol) polarization free energy of solvation -67.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds