Wall clock time and date at job start Mon Mar 30 2020 06:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 11 11 N 1.46900 * 109.47041 * 59.99927 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.38272 * 119.94122 * 279.72394 * 12 9 7 14 14 C 1.38141 * 120.05146 * 179.72648 * 13 12 9 15 15 C 1.38739 * 119.94516 * 0.52576 * 14 13 12 16 16 O 1.35896 * 120.05344 * 179.72517 * 15 14 13 17 17 C 1.42895 * 117.00538 * 0.02562 * 16 15 14 18 18 C 1.53004 * 109.47448 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47097 * 180.02562 * 18 17 16 20 20 F 1.39898 * 109.47039 * 180.02562 * 19 18 17 21 21 C 1.38731 * 119.88686 * 359.74990 * 15 14 13 22 22 C 1.38141 * 119.94366 * 359.97438 * 21 15 14 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.00900 * 111.00100 * 59.99591 * 11 9 7 25 25 H 1.00898 * 111.00378 * 183.95803 * 11 9 7 26 26 H 1.07998 * 119.97225 * 359.97438 * 13 12 9 27 27 H 1.08003 * 120.03085 * 180.30212 * 14 13 12 28 28 H 1.08996 * 109.47452 * 300.00369 * 17 16 15 29 29 H 1.09010 * 109.47073 * 60.00241 * 17 16 15 30 30 H 1.08995 * 109.46989 * 299.99929 * 18 17 16 31 31 H 1.08997 * 109.46631 * 60.00473 * 18 17 16 32 32 H 1.09000 * 109.46491 * 299.99961 * 19 18 17 33 33 H 1.08997 * 109.47035 * 60.00026 * 19 18 17 34 34 H 1.08000 * 120.02740 * 179.97438 * 21 15 14 35 35 H 1.08003 * 119.97078 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4070 -2.5773 -1.1992 12 6 2.2304 -3.6445 0.0018 13 6 2.8336 -4.0381 -1.1785 14 6 3.7360 -5.0841 -1.1790 15 6 4.0285 -5.7469 0.0042 16 8 4.9116 -6.7798 0.0052 17 6 5.5022 -7.1298 -1.2480 18 6 6.4618 -8.3049 -1.0492 19 6 7.0946 -8.6791 -2.3911 20 9 7.9715 -9.7539 -2.2094 21 6 3.4176 -5.3538 1.1861 22 6 2.5203 -4.3035 1.1822 23 1 -0.4850 -0.8401 -0.0004 24 1 0.9653 -2.5259 -2.0381 25 1 -0.1570 -3.4139 -1.1908 26 1 2.6022 -3.5247 -2.1000 27 1 4.2106 -5.3880 -2.1003 28 1 4.7199 -7.4142 -1.9516 29 1 6.0520 -6.2749 -1.6419 30 1 7.2441 -8.0200 -0.3458 31 1 5.9124 -9.1598 -0.6552 32 1 6.3124 -8.9638 -3.0948 33 1 7.6440 -7.8240 -2.7848 34 1 3.6433 -5.8684 2.1083 35 1 2.0447 -3.9968 2.1021 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380473971.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:58 Heat of formation + Delta-G solvation = -79.126608 kcal Electronic energy + Delta-G solvation = -17801.900125 eV Core-core repulsion = 14713.842572 eV Total energy + Delta-G solvation = -3088.057553 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.99138 -39.92372 -37.74790 -34.69609 -33.48965 -31.33928 -30.57996 -28.81349 -26.30871 -25.33335 -23.02601 -22.57887 -21.33274 -20.23338 -18.07196 -17.01036 -16.83768 -16.45816 -15.67687 -15.44596 -15.21585 -14.92803 -14.42982 -14.02953 -13.64025 -13.43784 -13.22974 -12.98261 -12.69650 -11.98406 -11.92622 -11.66179 -11.58752 -11.30350 -11.11209 -10.73204 -10.64725 -10.43594 -10.21995 -10.01608 -8.78974 -8.58507 -8.33219 -7.65823 -7.39571 -6.18104 -4.01576 1.76427 1.92282 3.07273 3.47747 3.48907 3.67811 4.23117 4.31583 4.41858 4.48682 4.61452 4.63645 4.82424 4.99688 5.13156 5.21340 5.30459 5.44481 5.51431 5.65853 5.72695 5.83888 5.92487 6.08013 6.12381 6.38396 6.66765 6.85324 6.93475 7.17294 7.38806 7.66638 7.98295 8.28759 8.64966 8.75420 9.05286 9.82086 11.21465 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.037139 B = 0.003785 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.751142 B = 7396.445590 C = 7610.479637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.038 3.962 3 Si 1.064 2.936 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.608 4.608 8 H 0.046 0.954 9 C 0.239 3.761 10 H 0.037 0.963 11 N -0.830 5.830 12 C -0.097 4.097 13 C -0.084 4.084 14 C -0.206 4.206 15 C 0.097 3.903 16 O -0.320 6.320 17 C 0.064 3.936 18 C -0.154 4.154 19 C 0.066 3.934 20 F -0.215 7.215 21 C -0.150 4.150 22 C -0.085 4.085 23 H 0.290 0.710 24 H 0.325 0.675 25 H 0.302 0.698 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.206 -14.987 -3.775 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.172 4.172 3 Si 0.893 3.107 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.647 4.647 8 H 0.064 0.936 9 C 0.130 3.870 10 H 0.055 0.945 11 N -0.357 5.357 12 C -0.099 4.099 13 C -0.103 4.103 14 C -0.225 4.225 15 C 0.053 3.947 16 O -0.234 6.234 17 C -0.012 4.012 18 C -0.192 4.192 19 C 0.011 3.989 20 F -0.196 7.196 21 C -0.168 4.168 22 C -0.103 4.103 23 H 0.102 0.898 24 H 0.138 0.862 25 H 0.112 0.888 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.720 -12.799 -3.350 16.417 hybrid contribution 0.947 -2.521 -0.471 2.733 sum 10.666 -15.320 -3.821 19.055 Atomic orbital electron populations 1.70557 1.06827 1.32786 1.42333 1.25628 0.96607 1.01825 0.93146 0.83649 0.74928 0.75806 0.76353 1.20886 1.21656 1.21684 1.21690 0.93380 0.90487 1.59159 0.93612 1.18319 0.88029 0.90536 0.90109 0.94497 1.59457 1.28625 1.42303 1.05320 1.21436 0.99149 0.97141 0.92212 1.20760 0.95548 0.95299 0.98656 1.21099 1.03966 1.00765 0.96625 1.18802 0.92174 0.89095 0.94590 1.85968 1.56425 1.48767 1.32280 1.22472 0.95767 0.97088 0.85837 1.22080 0.99817 0.98992 0.98266 1.21801 0.92066 0.87412 0.97575 1.92781 1.71597 1.58542 1.96721 1.20346 1.00319 1.00232 0.95927 1.20931 0.96835 0.94083 0.98488 0.89769 0.86201 0.88779 0.86275 0.86476 0.91967 0.91884 0.89606 0.89652 0.90361 0.90304 0.86061 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.51 55.43 0.75 -25.95 16 2 C 0.04 1.07 5.39 -17.82 -0.10 0.97 16 3 Si 1.06 25.15 29.90 -169.99 -5.08 20.07 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.61 -16.78 8.70 -34.44 -0.30 -17.08 16 8 H 0.05 1.29 7.74 -52.48 -0.41 0.88 16 9 C 0.24 5.78 2.46 -70.02 -0.17 5.61 16 10 H 0.04 0.97 7.87 -51.93 -0.41 0.56 16 11 N -0.83 -18.62 7.62 -6.65 -0.05 -18.67 16 12 C -0.10 -2.01 4.89 -104.60 -0.51 -2.52 16 13 C -0.08 -1.57 9.29 -39.60 -0.37 -1.94 16 14 C -0.21 -3.33 9.04 -39.43 -0.36 -3.69 16 15 C 0.10 1.60 6.69 -39.21 -0.26 1.33 16 16 O -0.32 -4.59 10.14 -19.41 -0.20 -4.78 16 17 C 0.06 0.65 4.74 37.16 0.18 0.83 16 18 C -0.15 -1.28 6.04 -26.73 -0.16 -1.44 16 19 C 0.07 0.46 7.55 37.16 0.28 0.74 16 20 F -0.22 -2.08 17.36 2.25 0.04 -2.04 16 21 C -0.15 -2.54 9.99 -39.43 -0.39 -2.94 16 22 C -0.08 -1.60 9.66 -39.61 -0.38 -1.99 16 23 H 0.29 8.65 6.39 -40.82 -0.26 8.39 16 24 H 0.32 7.00 7.33 -39.29 -0.29 6.71 16 25 H 0.30 5.98 9.06 -39.29 -0.36 5.62 16 26 H 0.12 2.16 6.65 -52.49 -0.35 1.81 16 27 H 0.12 1.54 6.30 -52.48 -0.33 1.21 16 28 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 29 H 0.06 0.60 7.66 -51.92 -0.40 0.20 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.12 2.24 8.03 -52.48 -0.42 1.82 16 LS Contribution 299.60 15.07 4.51 4.51 Total: -1.00 -31.25 299.60 -7.10 -38.35 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -4.53 Total: 10.64 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -2.55 Total: -22.12 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.70 Total: -44.62 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.20 Total: -4.78 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.25 -7.10 -38.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380473971.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.777 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds