Wall clock time and date at job start Mon Mar 30 2020 06:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 11 11 N 1.46900 * 109.47041 * 59.99927 * 9 7 2 12 12 C 1.50696 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.38272 * 119.94122 * 279.72394 * 12 9 7 14 14 C 1.38141 * 120.05146 * 179.72648 * 13 12 9 15 15 C 1.38739 * 119.94516 * 0.52576 * 14 13 12 16 16 O 1.35896 * 120.05344 * 179.72517 * 15 14 13 17 17 C 1.42895 * 117.00538 * 0.02562 * 16 15 14 18 18 C 1.53004 * 109.47448 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47097 * 180.02562 * 18 17 16 20 20 F 1.39898 * 109.47039 * 180.02562 * 19 18 17 21 21 C 1.38731 * 119.88686 * 359.74990 * 15 14 13 22 22 C 1.38141 * 119.94366 * 359.97438 * 21 15 14 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.00900 * 111.00100 * 59.99591 * 11 9 7 25 25 H 1.00898 * 111.00378 * 183.95803 * 11 9 7 26 26 H 1.07998 * 119.97225 * 359.97438 * 13 12 9 27 27 H 1.08003 * 120.03085 * 180.30212 * 14 13 12 28 28 H 1.08996 * 109.47452 * 300.00369 * 17 16 15 29 29 H 1.09010 * 109.47073 * 60.00241 * 17 16 15 30 30 H 1.08995 * 109.46989 * 299.99929 * 18 17 16 31 31 H 1.08997 * 109.46631 * 60.00473 * 18 17 16 32 32 H 1.09000 * 109.46491 * 299.99961 * 19 18 17 33 33 H 1.08997 * 109.47035 * 60.00026 * 19 18 17 34 34 H 1.08000 * 120.02740 * 179.97438 * 21 15 14 35 35 H 1.08003 * 119.97078 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4070 -2.5773 -1.1992 12 6 2.2304 -3.6445 0.0018 13 6 2.8336 -4.0381 -1.1785 14 6 3.7360 -5.0841 -1.1790 15 6 4.0285 -5.7469 0.0042 16 8 4.9116 -6.7798 0.0052 17 6 5.5022 -7.1298 -1.2480 18 6 6.4618 -8.3049 -1.0492 19 6 7.0946 -8.6791 -2.3911 20 9 7.9715 -9.7539 -2.2094 21 6 3.4176 -5.3538 1.1861 22 6 2.5203 -4.3035 1.1822 23 1 -0.4850 -0.8401 -0.0004 24 1 0.9653 -2.5259 -2.0381 25 1 -0.1570 -3.4139 -1.1908 26 1 2.6022 -3.5247 -2.1000 27 1 4.2106 -5.3880 -2.1003 28 1 4.7199 -7.4142 -1.9516 29 1 6.0520 -6.2749 -1.6419 30 1 7.2441 -8.0200 -0.3458 31 1 5.9124 -9.1598 -0.6552 32 1 6.3124 -8.9638 -3.0948 33 1 7.6440 -7.8240 -2.7848 34 1 3.6433 -5.8684 2.1083 35 1 2.0447 -3.9968 2.1021 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380473971.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:57 Heat of formation + Delta-G solvation = -98.958241 kcal Electronic energy + Delta-G solvation = -17802.760089 eV Core-core repulsion = 14713.842572 eV Total energy + Delta-G solvation = -3088.917517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.63038 -41.16801 -39.09197 -36.37534 -34.38993 -33.26296 -31.95966 -30.28212 -27.58250 -26.84997 -24.54113 -23.78852 -22.36601 -21.82146 -19.24986 -18.86132 -17.68692 -17.44761 -16.65086 -16.51734 -16.49340 -16.03702 -15.89684 -15.53549 -15.36344 -14.61792 -14.45245 -14.35057 -14.22312 -13.67986 -13.18219 -12.90071 -12.66947 -12.56430 -12.20466 -12.14031 -11.95649 -11.86144 -11.67977 -11.54941 -10.74084 -10.46892 -9.95808 -9.40476 -8.91548 -8.36614 -6.23906 0.38682 0.51340 1.56393 1.63618 1.82900 2.08593 2.62832 2.84919 3.32381 3.68119 3.74776 3.80483 3.89450 3.96066 4.13400 4.21022 4.22261 4.23647 4.32552 4.47522 4.48894 4.65409 4.75504 4.86700 4.93821 5.10159 5.17404 5.29949 5.43243 5.78797 5.81481 5.96530 6.23782 6.45114 6.69526 6.78946 7.06140 7.67480 8.98838 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.037139 B = 0.003785 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.751142 B = 7396.445590 C = 7610.479637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 1.109 2.891 4 H -0.286 1.286 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.616 4.616 8 H 0.035 0.965 9 C 0.244 3.756 10 H 0.005 0.995 11 N -0.836 5.836 12 C -0.127 4.127 13 C -0.090 4.090 14 C -0.198 4.198 15 C 0.107 3.893 16 O -0.327 6.327 17 C 0.054 3.946 18 C -0.148 4.148 19 C 0.065 3.935 20 F -0.232 7.232 21 C -0.153 4.153 22 C -0.096 4.096 23 H 0.279 0.721 24 H 0.330 0.670 25 H 0.317 0.683 26 H 0.120 0.880 27 H 0.153 0.847 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.141 0.859 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.056 -16.052 -4.886 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.215 4.215 3 Si 0.932 3.068 4 H -0.211 1.211 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.655 4.655 8 H 0.053 0.947 9 C 0.134 3.866 10 H 0.023 0.977 11 N -0.365 5.365 12 C -0.129 4.129 13 C -0.108 4.108 14 C -0.217 4.217 15 C 0.063 3.937 16 O -0.242 6.242 17 C -0.021 4.021 18 C -0.185 4.185 19 C 0.010 3.990 20 F -0.214 7.214 21 C -0.172 4.172 22 C -0.115 4.115 23 H 0.090 0.910 24 H 0.144 0.856 25 H 0.129 0.871 26 H 0.138 0.862 27 H 0.171 0.829 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.159 0.841 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.586 -13.898 -4.467 18.637 hybrid contribution 0.447 -2.358 -0.133 2.404 sum 12.033 -16.257 -4.600 20.742 Atomic orbital electron populations 1.70672 1.07736 1.32159 1.44989 1.26960 0.96705 1.05413 0.92393 0.83049 0.74140 0.72159 0.77439 1.21147 1.20236 1.20010 1.22002 0.93061 0.92281 1.58107 0.94694 1.17975 0.88273 0.90955 0.89379 0.97681 1.59206 1.28820 1.43493 1.04939 1.21118 1.00309 0.97469 0.94017 1.20810 0.96059 0.96171 0.97789 1.21368 1.02814 0.99390 0.98101 1.18886 0.91592 0.89006 0.94259 1.85978 1.55730 1.47638 1.34850 1.22813 0.96546 0.98182 0.84519 1.22027 0.99230 0.98120 0.99172 1.21963 0.92517 0.87506 0.96993 1.92749 1.72277 1.59544 1.96786 1.20521 0.99678 0.99597 0.97383 1.20957 0.97666 0.94942 0.97900 0.90995 0.85594 0.87109 0.86167 0.82942 0.90265 0.90622 0.90225 0.90027 0.88352 0.88516 0.84103 0.86068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.27 13.51 21.45 0.29 -55.98 16 2 C -0.01 -0.64 5.39 84.65 0.46 -0.18 16 3 Si 1.11 50.72 29.90 68.60 2.05 52.77 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.62 -34.54 8.70 25.60 0.22 -34.32 16 8 H 0.03 1.98 7.74 -2.91 -0.02 1.96 16 9 C 0.24 12.11 2.46 43.42 0.11 12.21 16 10 H 0.01 0.29 7.87 -2.39 -0.02 0.27 16 11 N -0.84 -38.17 7.62 -174.95 -1.33 -39.50 16 12 C -0.13 -5.29 4.89 -19.85 -0.10 -5.39 16 13 C -0.09 -3.24 9.29 22.25 0.21 -3.03 16 14 C -0.20 -5.85 9.04 22.37 0.20 -5.65 16 15 C 0.11 3.24 6.69 22.51 0.15 3.39 16 16 O -0.33 -8.36 10.14 -92.38 -0.94 -9.30 16 17 C 0.05 0.90 4.74 71.98 0.34 1.24 16 18 C -0.15 -2.03 6.04 30.60 0.18 -1.84 16 19 C 0.06 0.68 7.55 71.98 0.54 1.23 16 20 F -0.23 -3.99 17.36 44.97 0.78 -3.21 16 21 C -0.15 -4.98 9.99 22.36 0.22 -4.76 16 22 C -0.10 -3.64 9.66 22.25 0.21 -3.43 16 23 H 0.28 17.17 6.39 -92.71 -0.59 16.58 16 24 H 0.33 14.31 7.33 -89.69 -0.66 13.65 16 25 H 0.32 12.75 9.06 -89.70 -0.81 11.93 16 26 H 0.12 4.23 6.65 -2.91 -0.02 4.21 16 27 H 0.15 3.34 6.30 -2.91 -0.02 3.32 16 28 H 0.08 1.09 7.66 -2.39 -0.02 1.07 16 29 H 0.08 1.11 7.66 -2.38 -0.02 1.09 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.12 4.52 8.03 -2.91 -0.02 4.49 16 Total: -1.00 -67.72 299.60 3.43 -64.29 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -0.18 Total: 31.46 kcal Atomic # 6 Polarization: -43.29 SS G_CDS: 2.76 Total: -40.53 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -1.04 Total: -95.47 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.94 Total: -9.30 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.21 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.05 Total: 52.77 kcal Total: -67.72 3.43 -64.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380473971.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.668 kcal (2) G-P(sol) polarization free energy of solvation -67.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds