Wall clock time and date at job start Mon Mar 30 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 11 11 N 1.46891 * 109.47265 * 299.99906 * 9 7 2 12 12 C 1.50701 * 109.46837 * 179.97438 * 9 7 2 13 13 C 1.38268 * 119.94599 * 79.72772 * 12 9 7 14 14 C 1.38143 * 120.05835 * 179.72521 * 13 12 9 15 15 C 1.38730 * 119.94484 * 0.54609 * 14 13 12 16 16 O 1.35895 * 120.05974 * 179.74977 * 15 14 13 17 17 C 1.42902 * 116.99590 * 359.97438 * 16 15 14 18 18 C 1.53001 * 109.46876 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.46921 * 180.02562 * 18 17 16 20 20 F 1.39911 * 109.46969 * 179.97438 * 19 18 17 21 21 C 1.38735 * 119.88492 * 359.72592 * 15 14 13 22 22 C 1.38142 * 119.94797 * 0.02562 * 21 15 14 23 23 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 24 24 H 1.00898 * 111.00132 * 299.99806 * 11 9 7 25 25 H 1.00900 * 111.00439 * 63.95189 * 11 9 7 26 26 H 1.08006 * 119.96627 * 0.02562 * 13 12 9 27 27 H 1.08004 * 120.02662 * 180.27436 * 14 13 12 28 28 H 1.09003 * 109.47225 * 300.00023 * 17 16 15 29 29 H 1.08999 * 109.47356 * 60.00116 * 17 16 15 30 30 H 1.09003 * 109.47029 * 299.99918 * 18 17 16 31 31 H 1.08999 * 109.47217 * 59.99806 * 18 17 16 32 32 H 1.08995 * 109.47360 * 299.99570 * 19 18 17 33 33 H 1.08992 * 109.47089 * 59.99972 * 19 18 17 34 34 H 1.07997 * 120.02690 * 179.97438 * 21 15 14 35 35 H 1.07999 * 119.97559 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 1 3.8711 -0.6783 0.9024 11 7 4.0062 -0.5047 -1.1869 12 6 4.0137 -2.6150 0.0182 13 6 4.0472 -3.3404 -1.1584 14 6 4.5124 -4.6411 -1.1565 15 6 4.9356 -5.2234 0.0295 16 8 5.3890 -6.5045 0.0350 17 6 5.4018 -7.1934 -1.2169 18 6 5.9393 -8.6113 -1.0132 19 6 5.9536 -9.3487 -2.3537 20 9 6.4456 -10.6452 -2.1675 21 6 4.8957 -4.4954 1.2098 22 6 4.4345 -3.1933 1.2017 23 1 -0.4849 0.8401 -0.0004 24 1 3.6862 -0.9642 -2.0262 25 1 3.7367 0.4677 -1.1820 26 1 3.7138 -2.8879 -2.0808 27 1 4.5425 -5.2057 -2.0767 28 1 4.3882 -7.2431 -1.6148 29 1 6.0420 -6.6592 -1.9191 30 1 6.9528 -8.5620 -0.6152 31 1 5.2988 -9.1453 -0.3112 32 1 4.9403 -9.3981 -2.7522 33 1 6.5943 -8.8147 -3.0553 34 1 5.2242 -4.9465 2.1344 35 1 4.4036 -2.6260 2.1202 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380473972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:00 Heat of formation + Delta-G solvation = -70.911739 kcal Electronic energy + Delta-G solvation = -17804.032784 eV Core-core repulsion = 14716.331454 eV Total energy + Delta-G solvation = -3087.701330 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.94049 -39.83563 -37.67359 -34.75908 -33.45392 -31.83414 -30.51667 -29.04576 -26.35531 -25.83710 -22.94682 -22.69022 -21.32993 -19.92987 -17.98768 -17.09377 -16.94648 -16.38905 -15.70960 -15.59973 -15.18565 -15.03254 -14.54388 -14.17337 -13.83305 -13.35698 -13.12181 -12.85078 -12.51128 -12.24275 -11.99296 -11.68903 -11.54937 -11.51253 -11.13286 -10.90431 -10.75480 -10.41102 -10.28767 -10.10575 -9.55642 -8.80865 -8.47857 -7.82174 -7.32902 -6.25753 -4.29333 1.87391 2.02533 3.10840 3.14981 3.25761 3.26147 4.20674 4.33542 4.38218 4.47935 4.55050 4.69389 4.89304 5.03902 5.07792 5.21119 5.31103 5.39116 5.57930 5.58944 5.73930 5.91270 5.96783 6.04214 6.21550 6.44416 6.73571 6.80635 6.97286 7.20936 7.38857 7.51098 7.75061 8.04587 8.25386 8.46606 8.81952 9.33386 10.86854 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.048843 B = 0.003730 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.130673 B = 7505.600257 C = 7598.714095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.072 3.928 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.259 1.259 7 C -0.546 4.546 8 H 0.076 0.924 9 C 0.208 3.792 10 H 0.049 0.951 11 N -0.849 5.849 12 C -0.050 4.050 13 C -0.069 4.069 14 C -0.208 4.208 15 C 0.099 3.901 16 O -0.320 6.320 17 C 0.064 3.936 18 C -0.154 4.154 19 C 0.066 3.934 20 F -0.216 7.216 21 C -0.150 4.150 22 C -0.085 4.085 23 H 0.266 0.734 24 H 0.330 0.670 25 H 0.317 0.683 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.971 -12.723 -3.778 17.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.183 1.183 7 C -0.585 4.585 8 H 0.094 0.906 9 C 0.099 3.901 10 H 0.067 0.933 11 N -0.382 5.382 12 C -0.051 4.051 13 C -0.088 4.088 14 C -0.226 4.226 15 C 0.055 3.945 16 O -0.235 6.235 17 C -0.012 4.012 18 C -0.192 4.192 19 C 0.011 3.989 20 F -0.197 7.197 21 C -0.169 4.169 22 C -0.103 4.103 23 H 0.076 0.924 24 H 0.142 0.858 25 H 0.133 0.867 26 H 0.139 0.861 27 H 0.136 0.864 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.140 0.860 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.614 -12.927 -3.330 17.693 hybrid contribution -0.901 1.098 -0.443 1.488 sum 10.712 -11.828 -3.773 16.398 Atomic orbital electron populations 1.69900 1.06223 1.27197 1.49369 1.25052 0.94853 0.99057 0.94181 0.87000 0.80375 0.83795 0.78605 1.20169 1.21759 1.18323 1.21665 0.89682 0.94922 1.52258 0.90580 1.18463 0.93522 0.87499 0.90604 0.93277 1.59734 1.66931 1.05604 1.05948 1.19960 0.95681 0.97108 0.92357 1.20712 0.96945 0.92568 0.98558 1.21098 1.07458 0.97492 0.96578 1.18803 0.97858 0.83261 0.94606 1.85966 1.81229 1.24040 1.32234 1.22470 1.01080 0.91715 0.85918 1.22078 1.04176 0.94684 0.98219 1.21807 1.00620 0.78842 0.97611 1.92782 1.89948 1.40295 1.96676 1.20265 1.06076 0.94570 0.95970 1.20839 0.97450 0.93768 0.98269 0.92370 0.85777 0.86719 0.86069 0.86437 0.91848 0.91910 0.89685 0.89628 0.90303 0.90356 0.86030 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 20.56 24.61 -169.99 -4.18 16.38 16 4 H -0.28 -6.21 7.01 56.52 0.40 -5.81 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 7 C -0.55 -14.81 9.28 -34.44 -0.32 -15.13 16 8 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 9 C 0.21 4.82 2.47 -70.02 -0.17 4.65 16 10 H 0.05 1.17 7.06 -51.93 -0.37 0.81 16 11 N -0.85 -18.28 8.98 -6.65 -0.06 -18.34 16 12 C -0.05 -1.04 4.90 -104.60 -0.51 -1.55 16 13 C -0.07 -1.30 9.28 -39.61 -0.37 -1.66 16 14 C -0.21 -3.37 9.04 -39.43 -0.36 -3.72 16 15 C 0.10 1.62 6.69 -39.22 -0.26 1.36 16 16 O -0.32 -4.60 10.14 -19.41 -0.20 -4.80 16 17 C 0.06 0.66 4.74 37.16 0.18 0.83 16 18 C -0.15 -1.30 6.04 -26.73 -0.16 -1.46 16 19 C 0.07 0.46 7.55 37.16 0.28 0.74 16 20 F -0.22 -2.12 17.36 2.25 0.04 -2.08 16 21 C -0.15 -2.54 9.99 -39.43 -0.39 -2.93 16 22 C -0.08 -1.58 9.66 -39.60 -0.38 -1.97 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.33 6.68 7.34 -39.29 -0.29 6.40 16 25 H 0.32 6.96 4.30 -39.29 -0.17 6.79 16 26 H 0.12 2.17 6.67 -52.48 -0.35 1.82 16 27 H 0.12 1.55 6.30 -52.48 -0.33 1.22 16 28 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 29 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.13 2.16 8.03 -52.49 -0.42 1.74 16 LS Contribution 292.75 15.07 4.41 4.41 Total: -1.00 -30.51 292.75 -6.21 -36.72 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -4.43 Total: 12.23 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -2.57 Total: -18.94 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.71 Total: -43.93 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.20 Total: -4.80 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.18 Total: 16.38 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.51 -6.21 -36.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380473972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.188 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds