Wall clock time and date at job start Mon Mar 30 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 11 11 N 1.46891 * 109.47265 * 299.99906 * 9 7 2 12 12 C 1.50701 * 109.46837 * 179.97438 * 9 7 2 13 13 C 1.38268 * 119.94599 * 79.72772 * 12 9 7 14 14 C 1.38143 * 120.05835 * 179.72521 * 13 12 9 15 15 C 1.38730 * 119.94484 * 0.54609 * 14 13 12 16 16 O 1.35895 * 120.05974 * 179.74977 * 15 14 13 17 17 C 1.42902 * 116.99590 * 359.97438 * 16 15 14 18 18 C 1.53001 * 109.46876 * 180.02562 * 17 16 15 19 19 C 1.53001 * 109.46921 * 180.02562 * 18 17 16 20 20 F 1.39911 * 109.46969 * 179.97438 * 19 18 17 21 21 C 1.38735 * 119.88492 * 359.72592 * 15 14 13 22 22 C 1.38142 * 119.94797 * 0.02562 * 21 15 14 23 23 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 24 24 H 1.00898 * 111.00132 * 299.99806 * 11 9 7 25 25 H 1.00900 * 111.00439 * 63.95189 * 11 9 7 26 26 H 1.08006 * 119.96627 * 0.02562 * 13 12 9 27 27 H 1.08004 * 120.02662 * 180.27436 * 14 13 12 28 28 H 1.09003 * 109.47225 * 300.00023 * 17 16 15 29 29 H 1.08999 * 109.47356 * 60.00116 * 17 16 15 30 30 H 1.09003 * 109.47029 * 299.99918 * 18 17 16 31 31 H 1.08999 * 109.47217 * 59.99806 * 18 17 16 32 32 H 1.08995 * 109.47360 * 299.99570 * 19 18 17 33 33 H 1.08992 * 109.47089 * 59.99972 * 19 18 17 34 34 H 1.07997 * 120.02690 * 179.97438 * 21 15 14 35 35 H 1.07999 * 119.97559 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 1 3.8711 -0.6783 0.9024 11 7 4.0062 -0.5047 -1.1869 12 6 4.0137 -2.6150 0.0182 13 6 4.0472 -3.3404 -1.1584 14 6 4.5124 -4.6411 -1.1565 15 6 4.9356 -5.2234 0.0295 16 8 5.3890 -6.5045 0.0350 17 6 5.4018 -7.1934 -1.2169 18 6 5.9393 -8.6113 -1.0132 19 6 5.9536 -9.3487 -2.3537 20 9 6.4456 -10.6452 -2.1675 21 6 4.8957 -4.4954 1.2098 22 6 4.4345 -3.1933 1.2017 23 1 -0.4849 0.8401 -0.0004 24 1 3.6862 -0.9642 -2.0262 25 1 3.7367 0.4677 -1.1820 26 1 3.7138 -2.8879 -2.0808 27 1 4.5425 -5.2057 -2.0767 28 1 4.3882 -7.2431 -1.6148 29 1 6.0420 -6.6592 -1.9191 30 1 6.9528 -8.5620 -0.6152 31 1 5.2988 -9.1453 -0.3112 32 1 4.9403 -9.3981 -2.7522 33 1 6.5943 -8.8147 -3.0553 34 1 5.2242 -4.9465 2.1344 35 1 4.4036 -2.6260 2.1202 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380473972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:00 Heat of formation + Delta-G solvation = -91.422216 kcal Electronic energy + Delta-G solvation = -17804.922185 eV Core-core repulsion = 14716.331454 eV Total energy + Delta-G solvation = -3088.590731 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 253.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.59831 -41.06880 -39.00644 -36.40337 -34.37904 -33.78978 -31.86834 -30.46135 -28.02599 -26.94978 -24.47885 -23.80495 -22.33472 -21.48492 -19.19066 -19.06442 -17.69223 -17.63438 -17.00069 -16.45183 -16.38287 -16.23021 -15.83874 -15.70132 -15.25077 -14.69525 -14.32406 -14.27799 -13.98497 -13.85319 -13.56658 -12.96040 -12.77090 -12.59335 -12.46281 -12.15111 -11.90497 -11.80026 -11.59750 -11.50106 -11.45078 -10.91053 -9.83869 -9.51654 -8.83642 -8.39266 -6.47849 0.51133 0.62850 1.24399 1.33350 1.42538 2.16295 2.21702 2.90531 2.97720 3.74120 3.79103 3.86334 3.94291 3.99703 4.06531 4.17885 4.26972 4.35185 4.39708 4.54664 4.60628 4.70658 4.79266 4.91140 4.98188 5.14143 5.24453 5.37582 5.40967 5.51478 5.86274 5.95031 6.07781 6.41060 6.52734 6.58228 6.71116 7.19079 8.76755 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.048843 B = 0.003730 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.130673 B = 7505.600257 C = 7598.714095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.016 3.984 3 Si 0.940 3.060 4 H -0.254 1.254 5 H -0.293 1.293 6 H -0.247 1.247 7 C -0.546 4.546 8 H 0.031 0.969 9 C 0.216 3.784 10 H 0.041 0.959 11 N -0.838 5.838 12 C -0.086 4.086 13 C -0.080 4.080 14 C -0.203 4.203 15 C 0.106 3.894 16 O -0.328 6.328 17 C 0.054 3.946 18 C -0.147 4.147 19 C 0.065 3.935 20 F -0.233 7.233 21 C -0.155 4.155 22 C -0.095 4.095 23 H 0.268 0.732 24 H 0.338 0.662 25 H 0.316 0.684 26 H 0.123 0.877 27 H 0.151 0.849 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.142 0.858 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.807 -13.252 -4.736 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.183 4.183 3 Si 0.765 3.235 4 H -0.179 1.179 5 H -0.220 1.220 6 H -0.171 1.171 7 C -0.586 4.586 8 H 0.049 0.951 9 C 0.107 3.893 10 H 0.059 0.941 11 N -0.371 5.371 12 C -0.087 4.087 13 C -0.099 4.099 14 C -0.221 4.221 15 C 0.061 3.939 16 O -0.243 6.243 17 C -0.021 4.021 18 C -0.185 4.185 19 C 0.010 3.990 20 F -0.214 7.214 21 C -0.174 4.174 22 C -0.114 4.114 23 H 0.078 0.922 24 H 0.150 0.850 25 H 0.131 0.869 26 H 0.141 0.859 27 H 0.169 0.831 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.160 0.840 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.473 -13.482 -4.306 19.541 hybrid contribution -1.474 1.064 -0.152 1.824 sum 11.999 -12.418 -4.458 17.834 Atomic orbital electron populations 1.70054 1.08184 1.28324 1.51269 1.25919 0.95572 1.03048 0.93755 0.85929 0.79163 0.78671 0.79767 1.17944 1.22030 1.17067 1.21884 0.92037 0.93165 1.51526 0.95088 1.18254 0.90672 0.89612 0.90812 0.94071 1.59686 1.66264 1.05403 1.05727 1.19889 0.98441 0.96293 0.94083 1.20822 0.97401 0.93698 0.97977 1.21363 1.06130 0.96592 0.98035 1.18916 0.96546 0.84042 0.94378 1.85972 1.80616 1.22948 1.34728 1.22799 1.02329 0.92264 0.84670 1.22023 1.03705 0.93702 0.99103 1.21966 1.02129 0.77861 0.97046 1.92750 1.90266 1.41633 1.96744 1.20486 1.05580 0.93970 0.97338 1.20957 0.97740 0.94768 0.97900 0.92243 0.84951 0.86883 0.85939 0.83102 0.90769 0.90195 0.89977 0.90306 0.88605 0.88298 0.84005 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.16 13.96 21.45 0.30 -56.86 16 2 C 0.02 0.91 5.47 84.66 0.46 1.37 16 3 Si 0.94 42.33 24.61 68.60 1.69 44.02 16 4 H -0.25 -10.55 7.01 99.48 0.70 -9.86 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 7 C -0.55 -30.45 9.28 25.60 0.24 -30.21 16 8 H 0.03 1.95 7.98 -2.91 -0.02 1.93 16 9 C 0.22 10.02 2.47 43.42 0.11 10.13 16 10 H 0.04 1.96 7.06 -2.38 -0.02 1.94 16 11 N -0.84 -35.07 8.98 -174.96 -1.57 -36.64 16 12 C -0.09 -3.56 4.90 -19.85 -0.10 -3.66 16 13 C -0.08 -2.94 9.28 22.25 0.21 -2.73 16 14 C -0.20 -6.11 9.04 22.36 0.20 -5.91 16 15 C 0.11 3.24 6.69 22.51 0.15 3.39 16 16 O -0.33 -8.56 10.14 -92.37 -0.94 -9.50 16 17 C 0.05 0.94 4.74 71.98 0.34 1.28 16 18 C -0.15 -2.12 6.04 30.59 0.18 -1.93 16 19 C 0.06 0.72 7.55 71.98 0.54 1.26 16 20 F -0.23 -4.12 17.36 44.97 0.78 -3.34 16 21 C -0.16 -5.02 9.99 22.37 0.22 -4.80 16 22 C -0.10 -3.52 9.66 22.25 0.22 -3.31 16 23 H 0.27 15.26 8.31 -92.71 -0.77 14.48 16 24 H 0.34 13.33 7.34 -89.70 -0.66 12.67 16 25 H 0.32 13.22 4.30 -89.69 -0.39 12.83 16 26 H 0.12 4.30 6.67 -2.91 -0.02 4.29 16 27 H 0.15 3.42 6.30 -2.91 -0.02 3.41 16 28 H 0.07 1.16 7.66 -2.39 -0.02 1.14 16 29 H 0.08 1.15 7.66 -2.39 -0.02 1.13 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 35 H 0.13 4.50 8.03 -2.91 -0.02 4.47 16 Total: -1.00 -66.77 292.75 3.04 -63.73 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.00 Total: 33.70 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 2.78 Total: -35.11 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -1.27 Total: -93.50 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.94 Total: -9.50 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.78 Total: -3.34 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.69 Total: 44.02 kcal Total: -66.77 3.04 -63.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380473972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.696 kcal (2) G-P(sol) polarization free energy of solvation -66.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds