Wall clock time and date at job start Mon Mar 30 2020 06:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99626 * 2 1 4 4 H 1.48501 * 109.46936 * 239.99438 * 3 2 1 5 5 H 1.48503 * 109.47351 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46724 * 119.99700 * 3 2 1 7 7 C 1.38811 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99520 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99805 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47224 * 329.87828 * 10 9 7 12 12 C 1.50702 * 109.47426 * 209.88260 * 10 9 7 13 13 C 1.38234 * 119.98252 * 332.91479 * 12 10 9 14 14 C 1.38183 * 120.04857 * 179.72670 * 13 12 10 15 15 C 1.38499 * 120.02541 * 0.54565 * 14 13 12 16 16 F 1.35100 * 120.01347 * 179.75017 * 15 14 13 17 17 C 1.38401 * 119.97255 * 359.72431 * 15 14 13 18 18 C 1.38432 * 119.94966 * 0.02562 * 17 15 14 19 19 F 1.35104 * 120.01348 * 179.97438 * 18 17 15 20 20 C 1.53004 * 109.47370 * 89.88088 * 10 9 7 21 21 C 1.52998 * 117.49731 * 300.00162 * 20 10 9 22 22 C 1.52995 * 60.03298 * 252.49716 * 21 20 10 23 23 H 0.96999 * 120.00432 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00402 * 359.97438 * 9 7 2 25 25 H 1.07998 * 119.97680 * 359.97438 * 13 12 10 26 26 H 1.07997 * 119.99075 * 180.24978 * 14 13 12 27 27 H 1.08001 * 120.02105 * 180.02562 * 17 15 14 28 28 H 1.08995 * 115.54654 * 85.66856 * 20 10 9 29 29 H 1.08999 * 117.50034 * 0.02562 * 21 20 10 30 30 H 1.09003 * 117.50193 * 144.99211 * 21 20 10 31 31 H 1.09001 * 117.50280 * 107.50091 * 22 21 20 32 32 H 1.09005 * 117.50004 * 252.52703 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 3.0097 -3.5269 -0.5152 12 6 1.2425 -4.7078 -0.7073 13 6 -0.1360 -4.6091 -0.7362 14 6 -0.8849 -5.5691 -1.3897 15 6 -0.2556 -6.6374 -2.0069 16 9 -0.9883 -7.5785 -2.6415 17 6 1.1242 -6.7402 -1.9739 18 6 1.8737 -5.7751 -1.3233 19 9 3.2206 -5.8744 -1.2898 20 6 2.3158 -4.0970 1.4430 21 6 3.1331 -3.1582 2.3328 22 6 3.7525 -4.4618 1.8251 23 1 -0.4851 0.8400 -0.0004 24 1 0.3557 -2.3881 0.0005 25 1 -0.6278 -3.7790 -0.2511 26 1 -1.9616 -5.4889 -1.4151 27 1 1.6157 -7.5727 -2.4553 28 1 1.5108 -4.6619 1.9130 29 1 3.4868 -2.2269 1.8907 30 1 2.8657 -3.1055 3.3882 31 1 4.5141 -4.3884 1.0488 32 1 3.8922 -5.2671 2.5465 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381481658.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:16 Heat of formation + Delta-G solvation = -27.312840 kcal Electronic energy + Delta-G solvation = -18384.035141 eV Core-core repulsion = 15174.764096 eV Total energy + Delta-G solvation = -3209.271044 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.86772 -48.71329 -39.02281 -36.95497 -33.97867 -31.83562 -30.56528 -29.52152 -25.84373 -23.61572 -22.47666 -21.85604 -21.63070 -19.58746 -18.19821 -17.40700 -16.72416 -15.82607 -15.78513 -15.35639 -15.12638 -14.86317 -14.31502 -14.05015 -14.02803 -13.70985 -13.22458 -12.71929 -12.23473 -11.86704 -11.37026 -11.27670 -11.18618 -10.89735 -10.84517 -10.78652 -10.18831 -9.97186 -9.63577 -9.32696 -9.03970 -8.85201 -8.30316 -7.09077 -5.84618 -3.13336 1.18327 1.23011 3.40344 3.45405 3.45674 3.60238 4.05401 4.38775 4.57022 4.64318 4.80143 4.92777 5.06571 5.35616 5.40794 5.56214 5.57568 5.73467 5.89545 5.92574 6.02320 6.12362 6.17466 6.22497 6.39950 6.44824 6.54939 6.64101 6.79420 6.96580 7.00346 7.62756 8.32840 9.44694 9.96653 10.32561 11.37883 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.022226 B = 0.006822 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.469228 B = 4103.432558 C = 4858.207253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.241 3.759 11 H 0.067 0.933 12 C -0.107 4.107 13 C -0.048 4.048 14 C -0.161 4.161 15 C 0.110 3.890 16 F -0.140 7.140 17 C -0.196 4.196 18 C 0.129 3.871 19 F -0.130 7.130 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.192 4.192 23 H 0.257 0.743 24 H 0.385 0.615 25 H 0.150 0.850 26 H 0.139 0.861 27 H 0.142 0.858 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.376 -12.288 -0.684 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.355 5.355 10 C 0.131 3.869 11 H 0.085 0.915 12 C -0.109 4.109 13 C -0.067 4.067 14 C -0.180 4.180 15 C 0.091 3.909 16 F -0.118 7.118 17 C -0.215 4.215 18 C 0.109 3.891 19 F -0.109 7.109 20 C -0.180 4.180 21 C -0.192 4.192 22 C -0.230 4.230 23 H 0.067 0.933 24 H 0.221 0.779 25 H 0.168 0.832 26 H 0.157 0.843 27 H 0.160 0.840 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.496 -12.135 -0.726 12.249 hybrid contribution 0.188 0.677 -0.086 0.708 sum 1.684 -11.458 -0.812 11.609 Atomic orbital electron populations 1.69627 1.05101 1.25972 1.57245 1.24713 0.95509 0.97630 1.02678 0.86284 0.78583 0.83507 0.77923 1.21234 1.21664 1.21150 1.19138 0.90932 0.83723 1.43084 0.91077 1.42464 1.05717 0.99190 1.88090 1.18625 0.93888 0.84215 0.90188 0.91514 1.20595 0.95194 0.95906 0.99239 1.20892 0.92444 0.97452 0.95895 1.21197 1.01359 0.94569 1.00920 1.17251 0.88443 0.88380 0.96817 1.91487 1.77064 1.63355 1.79918 1.20879 0.92827 1.01982 1.05852 1.17108 0.77167 0.95423 0.99364 1.91498 1.28855 1.95840 1.94666 1.23048 0.93154 1.03168 0.98606 1.22767 1.03336 0.94622 0.98477 1.22958 0.96816 0.99529 1.03698 0.93336 0.77930 0.83229 0.84319 0.84029 0.89261 0.87708 0.90089 0.89359 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.82 13.06 55.49 0.72 -26.09 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.23 8.69 -15.06 -0.13 -6.36 16 8 H 0.07 1.82 7.34 -52.49 -0.39 1.43 16 9 N -0.71 -16.77 4.94 -54.55 -0.27 -17.04 16 10 C 0.24 4.73 2.53 -69.08 -0.17 4.55 16 11 H 0.07 1.38 7.39 -51.93 -0.38 1.00 16 12 C -0.11 -1.86 5.03 -104.54 -0.53 -2.38 16 13 C -0.05 -0.78 9.24 -39.60 -0.37 -1.15 16 14 C -0.16 -2.27 10.03 -39.51 -0.40 -2.67 16 15 C 0.11 1.55 7.30 -39.42 -0.29 1.26 16 16 F -0.14 -1.91 17.27 2.25 0.04 -1.87 16 17 C -0.20 -2.73 10.01 -39.45 -0.39 -3.13 16 18 C 0.13 2.05 7.24 -39.43 -0.29 1.77 16 19 F -0.13 -2.09 16.53 2.25 0.04 -2.05 16 20 C -0.16 -2.83 5.35 -90.58 -0.48 -3.32 16 21 C -0.15 -2.77 9.87 -26.73 -0.26 -3.04 16 22 C -0.19 -3.04 10.18 -26.70 -0.27 -3.31 16 23 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.38 9.37 5.55 -40.82 -0.23 9.14 16 25 H 0.15 2.54 6.15 -52.49 -0.32 2.22 16 26 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 27 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 28 H 0.09 1.55 8.11 -51.93 -0.42 1.12 16 29 H 0.10 2.10 6.67 -51.93 -0.35 1.75 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.09 1.38 8.05 -51.93 -0.42 0.97 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 283.61 15.07 4.27 4.27 Total: -1.00 -27.74 283.61 -7.23 -34.96 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -3.33 Total: 9.25 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -3.68 Total: -18.12 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.46 Total: -43.13 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.08 Total: -3.92 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.74 -7.23 -34.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381481658.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.649 kcal (2) G-P(sol) polarization free energy of solvation -27.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds