Wall clock time and date at job start Mon Mar 30 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99626 * 2 1 4 4 H 1.48501 * 109.46936 * 239.99438 * 3 2 1 5 5 H 1.48503 * 109.47351 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46724 * 119.99700 * 3 2 1 7 7 C 1.38811 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99520 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99805 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47224 * 329.87828 * 10 9 7 12 12 C 1.50702 * 109.47426 * 209.88260 * 10 9 7 13 13 C 1.38234 * 119.98252 * 332.91479 * 12 10 9 14 14 C 1.38183 * 120.04857 * 179.72670 * 13 12 10 15 15 C 1.38499 * 120.02541 * 0.54565 * 14 13 12 16 16 F 1.35100 * 120.01347 * 179.75017 * 15 14 13 17 17 C 1.38401 * 119.97255 * 359.72431 * 15 14 13 18 18 C 1.38432 * 119.94966 * 0.02562 * 17 15 14 19 19 F 1.35104 * 120.01348 * 179.97438 * 18 17 15 20 20 C 1.53004 * 109.47370 * 89.88088 * 10 9 7 21 21 C 1.52998 * 117.49731 * 300.00162 * 20 10 9 22 22 C 1.52995 * 60.03298 * 252.49716 * 21 20 10 23 23 H 0.96999 * 120.00432 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00402 * 359.97438 * 9 7 2 25 25 H 1.07998 * 119.97680 * 359.97438 * 13 12 10 26 26 H 1.07997 * 119.99075 * 180.24978 * 14 13 12 27 27 H 1.08001 * 120.02105 * 180.02562 * 17 15 14 28 28 H 1.08995 * 115.54654 * 85.66856 * 20 10 9 29 29 H 1.08999 * 117.50034 * 0.02562 * 21 20 10 30 30 H 1.09003 * 117.50193 * 144.99211 * 21 20 10 31 31 H 1.09001 * 117.50280 * 107.50091 * 22 21 20 32 32 H 1.09005 * 117.50004 * 252.52703 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 3.0097 -3.5269 -0.5152 12 6 1.2425 -4.7078 -0.7073 13 6 -0.1360 -4.6091 -0.7362 14 6 -0.8849 -5.5691 -1.3897 15 6 -0.2556 -6.6374 -2.0069 16 9 -0.9883 -7.5785 -2.6415 17 6 1.1242 -6.7402 -1.9739 18 6 1.8737 -5.7751 -1.3233 19 9 3.2206 -5.8744 -1.2898 20 6 2.3158 -4.0970 1.4430 21 6 3.1331 -3.1582 2.3328 22 6 3.7525 -4.4618 1.8251 23 1 -0.4851 0.8400 -0.0004 24 1 0.3557 -2.3881 0.0005 25 1 -0.6278 -3.7790 -0.2511 26 1 -1.9616 -5.4889 -1.4151 27 1 1.6157 -7.5727 -2.4553 28 1 1.5108 -4.6619 1.9130 29 1 3.4868 -2.2269 1.8907 30 1 2.8657 -3.1055 3.3882 31 1 4.5141 -4.3884 1.0488 32 1 3.8922 -5.2671 2.5465 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381481658.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:15 Heat of formation + Delta-G solvation = -41.187377 kcal Electronic energy + Delta-G solvation = -18384.636786 eV Core-core repulsion = 15174.764096 eV Total energy + Delta-G solvation = -3209.872689 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.097 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.98202 -49.95298 -40.33630 -38.35015 -35.72775 -33.51708 -31.76188 -31.16510 -27.43731 -25.29282 -23.86578 -23.15388 -22.98243 -21.07359 -19.66166 -18.94621 -18.04035 -17.14630 -16.97432 -16.73294 -16.48612 -16.29885 -15.88781 -15.47108 -15.29324 -15.10715 -14.95844 -14.22783 -13.50084 -13.18023 -13.07370 -12.87488 -12.65273 -12.45824 -12.43084 -12.21938 -12.08330 -11.79750 -11.06322 -10.99993 -10.81491 -10.03494 -9.56423 -9.03591 -7.92322 -5.19725 -0.03207 0.04488 1.49050 1.50275 1.56025 2.38349 2.55968 2.87115 3.03650 3.43701 3.43954 3.54679 3.66785 3.91952 3.98981 4.11578 4.22606 4.32129 4.44274 4.53252 4.78982 4.85593 4.87737 4.99415 5.00630 5.11620 5.15266 5.28694 5.38493 5.49917 5.55391 5.79434 6.28778 7.36986 8.06144 8.33313 9.30698 Molecular weight = 253.10amu Principal moments of inertia in cm(-1) A = 0.022226 B = 0.006822 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.469228 B = 4103.432558 C = 4858.207253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.068 4.068 3 Si 0.964 3.036 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.229 4.229 8 H 0.072 0.928 9 N -0.723 5.723 10 C 0.243 3.757 11 H 0.051 0.949 12 C -0.125 4.125 13 C -0.059 4.059 14 C -0.152 4.152 15 C 0.116 3.884 16 F -0.133 7.133 17 C -0.183 4.183 18 C 0.123 3.877 19 F -0.133 7.133 20 C -0.169 4.169 21 C -0.170 4.170 22 C -0.163 4.163 23 H 0.251 0.749 24 H 0.378 0.622 25 H 0.136 0.864 26 H 0.162 0.838 27 H 0.169 0.831 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 -14.025 -0.878 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.261 4.261 3 Si 0.793 3.207 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.205 1.205 7 C -0.361 4.361 8 H 0.090 0.910 9 N -0.364 5.364 10 C 0.134 3.866 11 H 0.069 0.931 12 C -0.127 4.127 13 C -0.077 4.077 14 C -0.170 4.170 15 C 0.097 3.903 16 F -0.112 7.112 17 C -0.203 4.203 18 C 0.103 3.897 19 F -0.111 7.111 20 C -0.189 4.189 21 C -0.207 4.207 22 C -0.201 4.201 23 H 0.059 0.941 24 H 0.213 0.787 25 H 0.153 0.847 26 H 0.180 0.820 27 H 0.187 0.813 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.039 -13.915 -0.919 14.093 hybrid contribution 0.044 1.081 -0.054 1.084 sum 2.082 -12.833 -0.973 13.037 Atomic orbital electron populations 1.69766 1.06296 1.26002 1.59525 1.25390 0.96268 1.00476 1.03932 0.85361 0.77328 0.79955 0.78035 1.20825 1.22300 1.20513 1.19424 0.91128 0.84818 1.40737 0.91001 1.42585 1.05582 1.00019 1.88249 1.18634 0.93109 0.83495 0.91391 0.93097 1.20411 0.95524 0.96276 1.00468 1.20772 0.92186 0.97882 0.96872 1.21364 1.02453 0.93650 0.99559 1.17252 0.88538 0.88218 0.96319 1.91513 1.76916 1.63033 1.79693 1.21083 0.92754 1.01846 1.04571 1.17115 0.77172 0.95608 0.99788 1.91488 1.29041 1.95858 1.94750 1.22922 0.94826 1.03882 0.97311 1.22726 1.04503 0.94465 0.98983 1.23011 0.94985 0.98653 1.03419 0.94056 0.78669 0.84679 0.82002 0.81349 0.88588 0.90359 0.88896 0.89233 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.87 13.06 21.65 0.28 -56.59 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 3 Si 0.96 45.27 29.55 68.60 2.03 47.30 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.23 -12.21 8.69 84.03 0.73 -11.48 16 8 H 0.07 3.73 7.34 -2.91 -0.02 3.71 16 9 N -0.72 -34.72 4.94 -326.49 -1.61 -36.33 16 10 C 0.24 9.55 2.53 44.25 0.11 9.66 16 11 H 0.05 2.14 7.39 -2.38 -0.02 2.12 16 12 C -0.12 -4.25 5.03 -19.81 -0.10 -4.35 16 13 C -0.06 -1.87 9.24 22.26 0.21 -1.66 16 14 C -0.15 -3.96 10.03 22.32 0.22 -3.74 16 15 C 0.12 2.93 7.30 22.37 0.16 3.09 16 16 F -0.13 -3.19 17.27 44.97 0.78 -2.42 16 17 C -0.18 -4.59 10.01 22.35 0.22 -4.37 16 18 C 0.12 3.70 7.24 22.37 0.16 3.86 16 19 F -0.13 -4.05 16.53 44.97 0.74 -3.31 16 20 C -0.17 -5.91 5.35 -10.77 -0.06 -5.97 16 21 C -0.17 -5.98 9.87 30.59 0.30 -5.67 16 22 C -0.16 -4.85 10.18 30.62 0.31 -4.53 16 23 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 24 H 0.38 18.99 5.55 -92.71 -0.51 18.47 16 25 H 0.14 4.70 6.15 -2.91 -0.02 4.69 16 26 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 27 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 28 H 0.10 3.23 8.11 -2.39 -0.02 3.21 16 29 H 0.08 3.18 6.67 -2.39 -0.02 3.16 16 30 H 0.09 3.00 8.14 -2.39 -0.02 2.99 16 31 H 0.09 2.65 8.05 -2.39 -0.02 2.63 16 32 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 Total: -1.00 -59.01 283.61 5.60 -53.41 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.64 Total: 26.43 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 2.74 Total: -28.48 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -1.33 Total: -92.92 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 1.52 Total: -5.73 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -59.01 5.60 -53.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381481658.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.220 kcal (2) G-P(sol) polarization free energy of solvation -59.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds