Wall clock time and date at job start Mon Mar 30 2020 07:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33387 * 122.54502 * 2 1 4 4 S 1.75881 * 109.59726 * 180.24346 * 3 2 1 5 5 C 1.75883 * 90.96912 * 359.73260 * 4 3 2 6 6 C 1.33386 * 109.59422 * 359.97438 * 5 4 3 7 7 C 1.50706 * 122.54021 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.46577 * 260.02216 * 7 6 5 9 9 C 1.46905 * 110.99800 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47234 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.46860 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.46860 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47237 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00032 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00139 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99998 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00317 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47018 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47305 * 119.99677 * 17 15 13 20 20 H 1.48492 * 109.47311 * 240.00021 * 17 15 13 21 21 H 1.08996 * 109.46506 * 270.25320 * 1 2 3 22 22 H 1.08993 * 109.46761 * 30.25120 * 1 2 3 23 23 H 1.08999 * 109.47279 * 150.25533 * 1 2 3 24 24 H 1.08005 * 125.20274 * 359.97272 * 3 2 1 25 25 H 1.07998 * 125.20609 * 179.97438 * 5 4 3 26 26 H 1.09000 * 109.47318 * 20.01724 * 7 6 5 27 27 H 1.09000 * 109.47161 * 140.02354 * 7 6 5 28 28 H 1.00896 * 111.00594 * 303.95433 * 8 7 6 29 29 H 1.09002 * 109.47091 * 300.00139 * 9 8 7 30 30 H 1.09001 * 109.46854 * 60.00166 * 9 8 7 31 31 H 1.09002 * 109.47089 * 300.00010 * 10 9 8 32 32 H 1.09001 * 109.47170 * 60.00230 * 10 9 8 33 33 H 1.09002 * 109.47344 * 299.99934 * 11 10 9 34 34 H 1.09004 * 109.47471 * 60.00183 * 11 10 9 35 35 H 1.09002 * 109.47089 * 300.00090 * 12 11 10 36 36 H 1.09001 * 109.47170 * 60.00310 * 12 11 10 37 37 H 0.97001 * 119.99899 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2246 1.1244 0.0000 4 16 3.9387 0.7303 -0.0070 5 6 3.5737 -0.9902 -0.0015 6 6 2.2516 -1.1670 0.0056 7 6 1.6165 -2.5337 0.0124 8 7 1.1858 -2.8800 -1.3487 9 6 0.5611 -4.2093 -1.3809 10 6 0.1272 -4.5344 -2.8116 11 6 -0.5228 -5.9190 -2.8451 12 6 -0.9573 -6.2438 -4.2757 13 6 -1.5981 -7.6074 -4.3088 14 1 -1.6863 -8.1848 -3.4003 15 6 -2.0710 -8.1183 -5.4989 16 7 -1.9632 -7.4155 -6.6052 17 14 -2.8659 -9.8082 -5.5397 18 1 -2.8656 -10.3886 -4.1728 19 1 -4.2638 -9.6861 -6.0258 20 1 -2.0998 -10.6937 -6.4530 21 1 -0.3632 0.0045 1.0277 22 1 -0.3632 0.8877 -0.5177 23 1 -0.3634 -0.8922 -0.5098 24 1 1.8156 2.1240 -0.0004 25 1 4.3077 -1.7824 -0.0035 26 1 2.3408 -3.2692 0.3624 27 1 0.7525 -2.5296 0.6769 28 1 0.5632 -2.1785 -1.7205 29 1 1.2784 -4.9562 -1.0406 30 1 -0.3101 -4.2172 -0.7259 31 1 -0.5900 -3.7876 -3.1523 32 1 0.9986 -4.5266 -3.4662 33 1 0.1947 -6.6656 -2.5045 34 1 -1.3943 -5.9273 -2.1904 35 1 -1.6749 -5.4972 -4.6159 36 1 -0.0862 -6.2355 -4.9308 37 1 -2.2962 -7.7748 -7.4424 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385193461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:43 Heat of formation + Delta-G solvation = -14.125368 kcal Electronic energy + Delta-G solvation = -15548.783125 eV Core-core repulsion = 13029.757413 eV Total energy + Delta-G solvation = -2519.025712 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.94482 -37.55114 -35.74807 -34.00053 -32.10224 -30.46659 -28.56152 -26.72047 -25.16625 -23.04988 -22.85259 -21.71582 -18.97205 -18.49499 -18.38399 -17.10442 -16.53370 -16.16093 -15.83047 -15.27151 -14.85960 -14.57677 -14.37375 -14.05362 -13.84519 -13.63471 -13.20651 -13.14573 -12.92011 -12.77176 -12.69909 -12.37169 -12.24599 -12.14949 -12.07216 -11.66252 -11.36335 -11.28869 -10.98590 -10.55509 -9.65981 -9.38073 -9.14007 -8.19502 -6.30974 0.10873 0.79612 1.09419 1.39975 1.40486 1.53986 1.67467 2.41352 3.13268 3.36812 3.96557 4.00052 4.10178 4.21084 4.34457 4.44496 4.52963 4.56377 4.64338 4.69922 4.74971 4.78942 4.85797 4.93814 5.06260 5.23800 5.26290 5.28697 5.37014 5.56173 5.56843 5.60057 5.79088 5.87804 6.06679 6.26447 6.42757 6.87058 7.38467 8.92643 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.053694 B = 0.002779 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.352494 B =10073.146567 C =10124.758493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.109 4.109 3 C -0.224 4.224 4 S 0.095 5.905 5 C -0.203 4.203 6 C -0.109 4.109 7 C 0.120 3.880 8 N -0.693 5.693 9 C 0.071 3.929 10 C -0.106 4.106 11 C -0.096 4.096 12 C 0.022 3.978 13 C -0.543 4.543 14 H 0.060 0.940 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.278 1.278 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.181 0.819 25 H 0.173 0.827 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.342 0.658 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.052 0.948 35 H -0.011 1.011 36 H -0.012 1.012 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.763 17.003 16.959 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.359 4.359 4 S 0.361 5.639 5 C -0.340 4.340 6 C -0.122 4.122 7 C -0.011 4.011 8 N -0.325 5.325 9 C -0.058 4.058 10 C -0.144 4.144 11 C -0.134 4.134 12 C -0.015 4.015 13 C -0.581 4.581 14 H 0.079 0.921 15 C -0.201 4.201 16 N -0.576 5.576 17 Si 0.791 3.209 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.204 1.204 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.078 0.922 24 H 0.198 0.802 25 H 0.190 0.810 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.161 0.839 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.008 0.992 36 H 0.006 0.994 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.729 17.647 16.602 26.498 hybrid contribution -2.404 -1.406 -0.198 2.792 sum 8.325 16.241 16.404 24.538 Atomic orbital electron populations 1.20580 0.88907 1.03069 1.02936 1.19045 0.98251 0.91682 1.03156 1.25664 0.95760 1.02983 1.11448 1.84151 1.06601 1.00110 1.73065 1.25689 0.99378 0.99720 1.09176 1.18851 0.93075 0.95800 1.04471 1.20551 0.98808 0.92193 0.89498 1.60516 1.46266 1.04015 1.21686 1.21876 0.97288 0.90704 0.95925 1.21463 0.99672 0.96539 0.96707 1.21394 0.99092 0.95775 0.97187 1.19033 0.94402 0.94976 0.93097 1.21783 1.38553 1.03345 0.94455 0.92134 1.26033 0.96724 1.02080 0.95299 1.70117 1.48065 1.39678 0.99699 0.85375 0.78011 0.78924 0.78593 1.18481 1.20291 1.20369 0.90312 0.90313 0.92174 0.80176 0.81003 0.89985 0.93472 0.83932 0.90817 0.94468 0.92914 0.92854 0.93020 0.92943 0.99217 0.99371 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 9.61 71.24 0.68 -0.76 16 2 C -0.11 -2.02 5.80 -20.92 -0.12 -2.14 16 3 C -0.22 -3.73 10.98 66.72 0.73 -3.00 16 4 S 0.10 1.61 23.34 -56.49 -1.32 0.29 16 5 C -0.20 -3.90 10.95 66.72 0.73 -3.17 16 6 C -0.11 -2.21 5.31 -20.92 -0.11 -2.32 16 7 C 0.12 2.45 5.21 85.56 0.45 2.90 16 8 N -0.69 -16.88 6.49 -517.90 -3.36 -20.24 16 9 C 0.07 1.90 5.69 86.30 0.49 2.39 16 10 C -0.11 -3.62 5.47 30.59 0.17 -3.45 16 11 C -0.10 -3.99 5.15 30.59 0.16 -3.84 16 12 C 0.02 1.20 4.97 29.85 0.15 1.35 16 13 C -0.54 -31.68 9.11 25.60 0.23 -31.44 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 16 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16 17 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 21 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.08 1.00 8.12 -2.39 -0.02 0.98 16 23 H 0.06 0.98 5.99 -2.39 -0.01 0.96 16 24 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16 25 H 0.17 2.87 8.06 -2.91 -0.02 2.84 16 26 H 0.08 1.61 8.07 -2.39 -0.02 1.59 16 27 H 0.05 0.89 7.71 -2.39 -0.02 0.87 16 28 H 0.34 8.11 7.30 -89.70 -0.65 7.45 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 35 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 36 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 37 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -65.63 320.32 2.03 -63.60 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.38 Total: 10.58 kcal Atomic # 6 Polarization: -47.28 SS G_CDS: 4.02 Total: -43.26 kcal Atomic # 7 Polarization: -75.04 SS G_CDS: -3.08 Total: -78.12 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.32 Total: 0.29 kcal Total: -65.63 2.03 -63.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385193461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.473 kcal (2) G-P(sol) polarization free energy of solvation -65.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds