Wall clock time and date at job start Mon Mar 30 2020 06:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99971 * 2 1 4 4 H 1.48504 * 109.46738 * 269.99903 * 3 2 1 5 5 H 1.48500 * 109.47439 * 29.99345 * 3 2 1 6 6 H 1.48496 * 109.47325 * 149.99672 * 3 2 1 7 7 C 1.37872 * 119.99566 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99498 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00736 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47393 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47360 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47360 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.47039 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46916 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46807 * 179.97438 * 15 14 13 17 17 C 1.38425 * 122.53830 * 269.73481 * 16 15 14 18 18 C 1.33393 * 114.91947 * 179.76391 * 17 16 15 19 19 S 1.75881 * 109.59063 * 0.47604 * 18 17 16 20 20 C 1.33383 * 122.54026 * 90.02362 * 16 15 14 21 21 H 0.97002 * 119.99740 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46495 * 59.99680 * 9 7 2 23 23 H 1.08998 * 109.46910 * 300.00180 * 9 7 2 24 24 H 1.09001 * 109.47393 * 60.00436 * 10 9 7 25 25 H 1.08998 * 109.47408 * 300.00082 * 10 9 7 26 26 H 1.09001 * 109.46514 * 59.99895 * 11 10 9 27 27 H 1.08998 * 109.46924 * 300.00375 * 11 10 9 28 28 H 1.09001 * 109.47393 * 60.00433 * 12 11 10 29 29 H 1.08998 * 109.47408 * 300.00078 * 12 11 10 30 30 H 1.00901 * 110.99869 * 56.04956 * 13 12 11 31 31 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 32 32 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 33 33 H 1.08995 * 109.46615 * 299.99641 * 15 14 13 34 34 H 1.08996 * 109.46939 * 60.00272 * 15 14 13 35 35 H 1.08002 * 122.53756 * 0.02562 * 17 16 15 36 36 H 1.07998 * 125.20267 * 180.21031 * 18 17 16 37 37 H 1.08005 * 125.20018 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4745 -6.1500 -0.0008 13 7 1.7399 -7.4222 -0.0020 14 6 2.6644 -8.5639 -0.0020 15 6 1.8643 -9.8680 -0.0040 16 6 2.8127 -11.0392 -0.0046 17 6 3.2779 -11.6199 -1.1719 18 6 4.1143 -12.6439 -0.9957 19 16 4.3423 -12.9298 0.7247 20 6 3.2632 -11.5982 1.1195 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8718 -3.6044 0.8905 25 1 2.8719 -3.6043 -0.8894 26 1 0.8539 -5.0445 -0.8904 27 1 0.8533 -5.0451 0.8896 28 1 3.1011 -6.0928 0.8893 29 1 3.1011 -6.0918 -0.8907 30 1 1.1038 -7.4717 -0.7836 31 1 3.2930 -8.5224 -0.8916 32 1 3.2918 -8.5234 0.8884 33 1 1.2355 -9.9097 0.8853 34 1 1.2373 -9.9082 -0.8946 35 1 2.9888 -11.2677 -2.1512 36 1 4.5771 -13.2132 -1.7882 37 1 3.0044 -11.2819 2.1192 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385209297.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:00 Heat of formation + Delta-G solvation = 2.087981 kcal Electronic energy + Delta-G solvation = -15154.316537 eV Core-core repulsion = 12635.993889 eV Total energy + Delta-G solvation = -2518.322648 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -38.80881 -36.69509 -34.32998 -32.51801 -31.11999 -29.04822 -27.38559 -24.66214 -23.47746 -22.02824 -21.35783 -19.94216 -18.95366 -17.85116 -16.24771 -16.05268 -15.61182 -14.59848 -14.54528 -14.39534 -14.01897 -13.35426 -13.25998 -13.00596 -12.50010 -12.42287 -12.22325 -11.84655 -11.62086 -11.32303 -11.24203 -10.96985 -10.94015 -10.51414 -10.46470 -10.39957 -9.60235 -9.24180 -9.08987 -8.98040 -8.64284 -8.38374 -8.30441 -5.95801 -3.97904 0.72735 1.38694 1.70764 2.41112 3.34071 3.40068 3.43755 4.18833 4.49527 4.61319 4.83267 4.95539 5.08490 5.18706 5.29174 5.39582 5.46126 5.49425 5.52087 5.66443 5.80579 5.87852 5.93948 6.15901 6.19949 6.25207 6.28223 6.54260 6.85415 6.98733 7.05858 7.25426 7.43019 7.73441 7.89561 8.05529 8.48388 9.09633 9.65796 11.15578 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.068972 B = 0.002347 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.864371 B =11927.618609 C =12056.049039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.060 3.940 13 N -0.693 5.693 14 C 0.065 3.935 15 C -0.060 4.060 16 C -0.097 4.097 17 C -0.129 4.129 18 C -0.213 4.213 19 S 0.084 5.916 20 C -0.208 4.208 21 H 0.260 0.740 22 H 0.014 0.986 23 H 0.016 0.984 24 H 0.047 0.953 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.026 0.974 30 H 0.339 0.661 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.601 -26.515 -0.890 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.069 4.069 13 N -0.324 5.324 14 C -0.065 4.065 15 C -0.100 4.100 16 C -0.110 4.110 17 C -0.160 4.160 18 C -0.348 4.348 19 S 0.347 5.653 20 C -0.343 4.343 21 H 0.069 0.931 22 H 0.033 0.967 23 H 0.034 0.966 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.157 0.843 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.181 0.819 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.234 -27.466 0.656 28.410 hybrid contribution 0.022 1.951 -1.789 2.647 sum 7.256 -25.515 -1.134 26.551 Atomic orbital electron populations 1.69972 1.06039 1.26499 1.51070 1.25039 0.94858 0.99240 0.95461 0.86605 0.79854 0.83555 0.78049 1.20715 1.21234 1.19911 1.21294 0.93012 0.91228 1.50258 0.92788 1.19093 0.94039 0.91349 0.97160 1.21590 0.99082 0.93978 1.00069 1.21640 0.97876 0.93838 1.01997 1.22070 0.96223 0.88476 1.00129 1.60506 1.20040 1.01817 1.49992 1.21899 0.94394 0.89438 1.00725 1.20311 0.95860 0.90209 1.03604 1.18954 1.00901 0.99212 0.91953 1.20154 0.99266 0.97054 0.99531 1.25595 1.06100 1.04140 0.99000 1.84283 1.46935 1.33104 1.00943 1.25521 1.04713 1.01458 1.02642 0.93062 0.96742 0.96582 0.93446 0.93703 0.92746 0.91632 0.91304 0.95592 0.84334 0.95380 0.91053 0.89974 0.90947 0.84263 0.81948 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.12 -2.00 5.47 -26.73 -0.15 -2.15 16 12 C 0.06 0.86 5.69 -3.82 -0.02 0.84 16 13 N -0.69 -8.64 6.50 -113.78 -0.74 -9.38 16 14 C 0.07 0.69 5.67 -3.82 -0.02 0.67 16 15 C -0.06 -0.53 5.73 -27.88 -0.16 -0.69 16 16 C -0.10 -0.88 5.05 -106.25 -0.54 -1.42 16 17 C -0.13 -1.09 9.98 -41.21 -0.41 -1.50 16 18 C -0.21 -1.65 11.23 29.04 0.33 -1.32 16 19 S 0.08 0.66 23.34 -107.50 -2.51 -1.85 16 20 C -0.21 -1.80 10.98 29.04 0.32 -1.48 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.34 3.89 8.73 -39.29 -0.34 3.54 16 31 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 34 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 35 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 325.10 15.07 4.90 4.90 Total: -1.00 -30.82 325.10 -10.20 -41.02 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -6.22 Total: -1.97 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -1.34 Total: -22.97 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.00 Total: -36.12 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.51 Total: -1.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.82 -10.20 -41.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385209297.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.106 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds