Wall clock time and date at job start Mon Mar 30 2020 06:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99971 * 2 1 4 4 H 1.48504 * 109.46738 * 269.99903 * 3 2 1 5 5 H 1.48500 * 109.47439 * 29.99345 * 3 2 1 6 6 H 1.48496 * 109.47325 * 149.99672 * 3 2 1 7 7 C 1.37872 * 119.99566 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99498 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00736 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47393 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47360 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47360 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.47039 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46916 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46807 * 179.97438 * 15 14 13 17 17 C 1.38425 * 122.53830 * 269.73481 * 16 15 14 18 18 C 1.33393 * 114.91947 * 179.76391 * 17 16 15 19 19 S 1.75881 * 109.59063 * 0.47604 * 18 17 16 20 20 C 1.33383 * 122.54026 * 90.02362 * 16 15 14 21 21 H 0.97002 * 119.99740 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46495 * 59.99680 * 9 7 2 23 23 H 1.08998 * 109.46910 * 300.00180 * 9 7 2 24 24 H 1.09001 * 109.47393 * 60.00436 * 10 9 7 25 25 H 1.08998 * 109.47408 * 300.00082 * 10 9 7 26 26 H 1.09001 * 109.46514 * 59.99895 * 11 10 9 27 27 H 1.08998 * 109.46924 * 300.00375 * 11 10 9 28 28 H 1.09001 * 109.47393 * 60.00433 * 12 11 10 29 29 H 1.08998 * 109.47408 * 300.00078 * 12 11 10 30 30 H 1.00901 * 110.99869 * 56.04956 * 13 12 11 31 31 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 32 32 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 33 33 H 1.08995 * 109.46615 * 299.99641 * 15 14 13 34 34 H 1.08996 * 109.46939 * 60.00272 * 15 14 13 35 35 H 1.08002 * 122.53756 * 0.02562 * 17 16 15 36 36 H 1.07998 * 125.20267 * 180.21031 * 18 17 16 37 37 H 1.08005 * 125.20018 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4745 -6.1500 -0.0008 13 7 1.7399 -7.4222 -0.0020 14 6 2.6644 -8.5639 -0.0020 15 6 1.8643 -9.8680 -0.0040 16 6 2.8127 -11.0392 -0.0046 17 6 3.2779 -11.6199 -1.1719 18 6 4.1143 -12.6439 -0.9957 19 16 4.3423 -12.9298 0.7247 20 6 3.2632 -11.5982 1.1195 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8718 -3.6044 0.8905 25 1 2.8719 -3.6043 -0.8894 26 1 0.8539 -5.0445 -0.8904 27 1 0.8533 -5.0451 0.8896 28 1 3.1011 -6.0928 0.8893 29 1 3.1011 -6.0918 -0.8907 30 1 1.1038 -7.4717 -0.7836 31 1 3.2930 -8.5224 -0.8916 32 1 3.2918 -8.5234 0.8884 33 1 1.2355 -9.9097 0.8853 34 1 1.2373 -9.9082 -0.8946 35 1 2.9888 -11.2677 -2.1512 36 1 4.5771 -13.2132 -1.7882 37 1 3.0044 -11.2819 2.1192 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385209297.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:56 Heat of formation + Delta-G solvation = -15.577952 kcal Electronic energy + Delta-G solvation = -15155.082589 eV Core-core repulsion = 12635.993889 eV Total energy + Delta-G solvation = -2519.088700 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 253.120 amu Computer time = 4.47 seconds Orbital eigenvalues (eV) -39.48017 -37.83694 -36.00281 -34.27580 -32.26751 -30.21661 -28.66743 -26.22040 -24.50057 -22.87031 -22.83489 -21.64196 -19.58396 -18.50123 -18.40199 -17.12228 -16.56464 -16.34515 -15.86550 -15.50680 -14.96868 -14.48811 -14.30933 -13.90792 -13.87117 -13.62375 -13.48681 -13.05915 -12.89708 -12.74711 -12.61172 -12.29806 -12.23843 -12.10212 -11.86661 -11.61390 -11.35920 -11.29965 -10.98043 -10.55081 -9.70650 -9.37747 -9.27149 -8.19632 -6.31101 0.11053 0.78859 1.09853 1.39655 1.41469 1.52689 1.77115 2.41163 3.12954 3.21900 3.97238 4.09631 4.17894 4.19496 4.33017 4.35565 4.54389 4.58087 4.62782 4.67423 4.77980 4.83733 4.90909 4.95872 5.13031 5.17968 5.25269 5.28862 5.36660 5.54427 5.55712 5.60559 5.78634 5.87366 6.07183 6.26277 6.48325 6.86475 7.38128 8.92269 Molecular weight = 253.12amu Principal moments of inertia in cm(-1) A = 0.068972 B = 0.002347 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.864371 B =11927.618609 C =12056.049039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.022 3.978 10 C -0.097 4.097 11 C -0.105 4.105 12 C 0.071 3.929 13 N -0.698 5.698 14 C 0.070 3.930 15 C -0.051 4.051 16 C -0.108 4.108 17 C -0.144 4.144 18 C -0.214 4.214 19 S 0.088 5.912 20 C -0.221 4.221 21 H 0.264 0.736 22 H -0.010 1.010 23 H -0.011 1.011 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.346 0.654 31 H 0.030 0.970 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.151 0.849 36 H 0.183 0.817 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.898 -27.057 -1.297 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.136 4.136 11 C -0.143 4.143 12 C -0.058 4.058 13 N -0.329 5.329 14 C -0.059 4.059 15 C -0.091 4.091 16 C -0.121 4.121 17 C -0.174 4.174 18 C -0.349 4.349 19 S 0.352 5.648 20 C -0.356 4.356 21 H 0.072 0.928 22 H 0.009 0.991 23 H 0.008 0.992 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.164 0.836 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.169 0.831 36 H 0.201 0.799 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.538 -28.031 0.246 29.304 hybrid contribution -0.408 2.070 -1.658 2.683 sum 8.130 -25.961 -1.412 27.241 Atomic orbital electron populations 1.70108 1.07838 1.27767 1.51761 1.26034 0.95831 1.03512 0.94770 0.85421 0.78631 0.78293 0.78542 1.19666 1.20677 1.18738 1.21747 0.93556 0.92548 1.50419 0.92230 1.19028 0.94529 0.93285 0.94654 1.21401 0.97991 0.93750 1.00415 1.21465 0.98031 0.93255 1.01588 1.21837 0.95298 0.88250 1.00441 1.60445 1.20399 1.01512 1.50551 1.21873 0.94196 0.89353 1.00490 1.20207 0.95674 0.89386 1.03882 1.19044 1.01214 0.99416 0.92399 1.20341 0.99693 0.97459 0.99898 1.25911 1.05683 1.03972 0.99347 1.84264 1.46549 1.32693 1.01337 1.25731 1.04958 1.01831 1.03092 0.92768 0.99143 0.99234 0.93172 0.93122 0.92659 0.92594 0.91335 0.94968 0.83576 0.95178 0.91639 0.90269 0.90107 0.83142 0.79932 0.81054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 3 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.54 -31.86 9.11 25.60 0.23 -31.63 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.21 4.97 29.85 0.15 1.35 16 10 C -0.10 -4.08 5.15 30.59 0.16 -3.92 16 11 C -0.11 -3.60 5.47 30.59 0.17 -3.44 16 12 C 0.07 1.94 5.69 86.30 0.49 2.43 16 13 N -0.70 -16.38 6.50 -513.88 -3.34 -19.72 16 14 C 0.07 1.38 5.67 86.30 0.49 1.87 16 15 C -0.05 -0.85 5.73 29.85 0.17 -0.68 16 16 C -0.11 -1.81 5.05 -20.92 -0.11 -1.91 16 17 C -0.14 -2.19 9.98 21.22 0.21 -1.98 16 18 C -0.21 -2.93 11.23 66.72 0.75 -2.18 16 19 S 0.09 1.28 23.34 -56.49 -1.32 -0.04 16 20 C -0.22 -3.59 10.98 66.72 0.73 -2.85 16 21 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 22 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 23 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 24 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.35 7.38 8.73 -89.69 -0.78 6.60 16 31 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 34 H 0.08 1.20 8.13 -2.39 -0.02 1.18 16 35 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 37 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -65.47 325.10 1.80 -63.67 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.24 Total: 9.61 kcal Atomic # 6 Polarization: -46.61 SS G_CDS: 3.91 Total: -42.70 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -3.06 Total: -77.53 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -1.32 Total: -0.04 kcal Total: -65.47 1.80 -63.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385209297.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.093 kcal (2) G-P(sol) polarization free energy of solvation -65.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.47 seconds